HHsearch results for GI: 254780647 and protein with PDBid: 2nn6_H

>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1

Probab=92.85  E-value=0.057  Score=30.79  Aligned_cols=51  Identities=20%  Similarity=0.263  Sum_probs=40.5

Q ss_pred             CCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf             781953796899723888937766075686756352256899876368883289976154
Q gi|254780647|r   27 GGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKI   86 (90)
Q Consensus        27 ~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~   86 (90)
                      .-+.|.||..|...  ..|.||.++.. .|..|||.+.|.|....      +.|+|.|..
T Consensus        38 ~r~IV~PGd~I~~~--~~~~~G~GTY~-~~g~I~Asv~G~v~~~n------k~VsV~pl~   88 (308)
T 2nn6_H           38 KKHLVVPGDTITTD--TGFMRGHGTYM-GEEKLIASVAGSVERVN------KLICVKALK   88 (308)
T ss_dssp             --CBCCTTCBCCCC--TTCCBCTTEEE-CSSSEEECSSEEEEEET------TEEEEEESS
T ss_pred             CCEEEECCCEECCC--CCEECCCCEEE-ECCEEEEEEEEEEEEEC------CEEEEEECC
T ss_conf             84599798780327--87814784799-89999998768999849------979999799