RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780647|ref|YP_003065060.1| 50S ribosomal protein L27
[Candidatus Liberibacter asiaticus str. psy62]
(90 letters)
>gnl|CDD|144560 pfam01016, Ribosomal_L27, Ribosomal L27 protein.
Length = 80
Score = 133 bits (337), Expect = 1e-32
Identities = 59/81 (72%), Positives = 70/81 (86%), Gaps = 1/81 (1%)
Query: 2 AHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYA 61
AHKK GGST+NGRDS G+RLG+KK GGQ V AGNII+RQRGT++HPG NVG+GKDHT++A
Sbjct: 1 AHKKGGGSTKNGRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFA 60
Query: 62 LVDGHVRFFKKFSKGRAYVSV 82
LVDG+V+F KK K R YVSV
Sbjct: 61 LVDGYVKFEKK-PKKRKYVSV 80
>gnl|CDD|30560 COG0211, RpmA, Ribosomal protein L27 [Translation, ribosomal
structure and biogenesis].
Length = 87
Score = 121 bits (305), Expect = 4e-29
Identities = 59/87 (67%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 1 MAHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIY 60
MAHKK GGST+NGRDS +RLG+KK GGQ V AG+II+RQRGT++HPG+NVG GKDHT++
Sbjct: 1 MAHKKGGGSTRNGRDSESKRLGVKKFGGQFVKAGSIIVRQRGTKFHPGVNVGRGKDHTLF 60
Query: 61 ALVDGHVRFFKKFSKGRAYVSVIPKIE 87
ALVDG V+F K K R YVSV+P+ E
Sbjct: 61 ALVDGVVKFETK-GKNRKYVSVVPEAE 86
>gnl|CDD|39800 KOG4600, KOG4600, KOG4600, Mitochondrial ribosomal protein MRP7
(L2) [Translation, ribosomal structure and biogenesis].
Length = 144
Score = 117 bits (294), Expect = 8e-28
Identities = 55/84 (65%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
Query: 2 AHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYA 61
A KK GST+NGRDSAG+RLG+KK GQSVI GNII+RQRGT++HPG NVG+GKDHTI+A
Sbjct: 29 ATKKGAGSTKNGRDSAGRRLGVKKYEGQSVIPGNIIVRQRGTKFHPGDNVGIGKDHTIFA 88
Query: 62 LVDGHVRFFK-KFSKGRAYVSVIP 84
L +G VRF K K + R ++ V P
Sbjct: 89 LEEGRVRFEKSKITPPRKWIGVDP 112
>gnl|CDD|177044 CHL00121, rpl27, ribosomal protein L27; Reviewed.
Length = 86
Score = 112 bits (281), Expect = 3e-26
Identities = 52/84 (61%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
Query: 1 MAHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIY 60
MAHKK GST+NGRDS +RLG+K+ GG+ V AGNI+IRQRGT++ PGLNVG GKD T+Y
Sbjct: 1 MAHKKGAGSTKNGRDSNAKRLGVKRFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLY 60
Query: 61 ALVDGHVRFFKKFSKGRAYVSVIP 84
AL+DG V+ FKK +K + ++VI
Sbjct: 61 ALIDGFVK-FKKKNKKQKSINVIN 83
>gnl|CDD|36641 KOG1428, KOG1428, KOG1428, Inhibitor of type V adenylyl
cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1
[Signal transduction mechanisms].
Length = 3738
Score = 30.1 bits (67), Expect = 0.13
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 47 PGLNVGLGKDHTIYALVDGHVRFFKKFSKGR 77
+ V G +HTI DG V F F KG+
Sbjct: 820 VIVQVAAGSNHTILRANDGSVFTFGAFGKGQ 850
>gnl|CDD|147114 pfam04794, YdjC, YdjC-like protein. Family of YdjC-like
proteins. This region is possibly involved in the the
cleavage of cellobiose-phosphate.
Length = 261
Score = 27.2 bits (61), Expect = 1.0
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 10/46 (21%)
Query: 46 HPGLNVGL------GKDHT----IYALVDGHVRFFKKFSKGRAYVS 81
+P L VGL GK + +LVD + F + R +
Sbjct: 51 NPDLGVGLHLTLTAGKPLLPPTEVPSLVDENGYFLRLSVLLRRALL 96
>gnl|CDD|37479 KOG2268, KOG2268, KOG2268, Serine/threonine protein kinase [Signal
transduction mechanisms, General function prediction
only].
Length = 465
Score = 25.7 bits (56), Expect = 2.5
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 38 IRQRGTRYHPGLNVGLGKDHTIYALVDG 65
+ RG+ G +G+GK+ IY + D
Sbjct: 87 LSNRGSVESVGNQIGVGKESDIYVVADE 114
>gnl|CDD|143839 pfam00054, Laminin_G_1, Laminin G domain.
Length = 131
Score = 25.7 bits (57), Expect = 3.0
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 54 GKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKIED 88
+D L DG + G A V K+ D
Sbjct: 18 ERDFLALELRDGRLEVSYDLGSGPAVVRSGDKLND 52
>gnl|CDD|38526 KOG3316, KOG3316, KOG3316, Transport protein particle (TRAPP)
complex subunit [Intracellular trafficking, secretion,
and vesicular transport].
Length = 163
Score = 25.2 bits (55), Expect = 4.0
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 57 HTIYALVDGHVRFFKKFSKGRAYVSVIPK 85
Y L D R+ S G Y+ PK
Sbjct: 94 RGTYVLQDNKFRWLTSMSPGTQYLEEAPK 122
>gnl|CDD|39541 KOG4340, KOG4340, KOG4340, Uncharacterized conserved protein
[Function unknown].
Length = 459
Score = 25.0 bits (54), Expect = 4.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 38 IRQRGTRYHPGLNVGLGKD 56
I +RG R HP L +G+ +
Sbjct: 204 IIERGIRQHPELGIGMTTE 222
>gnl|CDD|113519 pfam04752, ChaC, ChaC-like protein. The ChaC protein is thought
to be associated with the putative ChaA Ca2+/H+ cation
transport protein in Escherichia coli. Its function is
not known. This family also includes homologues regions
from several other bacterial and eukaryotic proteins.
Length = 178
Score = 24.6 bits (54), Expect = 5.2
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 38 IRQRGTRYHPGLNVGLGKDH 57
RGT PG + L +
Sbjct: 37 TDHRGTPEQPGRVLTLEEGE 56
>gnl|CDD|35386 KOG0164, KOG0164, KOG0164, Myosin class I heavy chain
[Cytoskeleton].
Length = 1001
Score = 24.5 bits (53), Expect = 6.9
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 22 GLKKSGGQSV------IAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSK 75
G K + GQS + + L G + L HV+ +F+K
Sbjct: 809 GKKANWGQSRAWIGDYLGSQEENPGYSATFKNRLQQLKGSETFGPVLFSSHVKKVNRFNK 868
Query: 76 GR 77
R
Sbjct: 869 PR 870
>gnl|CDD|30826 COG0478, COG0478, RIO-like serine/threonine protein kinase fused to
N-terminal HTH domain [Signal transduction mechanisms].
Length = 304
Score = 24.4 bits (53), Expect = 7.0
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 12/55 (21%)
Query: 39 RQRGTRYHPGLNVGLGKDHTIYALVDGH-----VRF-------FKKFSKGRAYVS 81
+RG G +G+GK+ +Y +D V+F F+K + R Y++
Sbjct: 87 VKRGIVEAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLA 141
>gnl|CDD|29010 cd00110, LamG, Laminin G domain; Laminin G-like domains are
usually Ca++ mediated receptors that can have binding
sites for steroids, beta1 integrins, heparin,
sulfatides, fibulin-1, and alpha-dystroglycans.
Proteins that contain LamG domains serve a variety of
purposes including signal transduction via cell-surface
steroid receptors, adhesion, migration and
differentiation through mediation of cell adhesion
molecules..
Length = 151
Score = 24.3 bits (52), Expect = 7.2
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 52 GLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKIEDTQ 90
G D L DG + G +S + D Q
Sbjct: 43 QNGGDFLALELEDGRLVLRYDLGSGSLVLSSKTPLNDGQ 81
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.137 0.397
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,035,907
Number of extensions: 46809
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 20
Length of query: 90
Length of database: 6,263,737
Length adjustment: 59
Effective length of query: 31
Effective length of database: 4,988,806
Effective search space: 154652986
Effective search space used: 154652986
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)