HHsearch alignment for GI: 254780648 and conserved domain: CHL00071
>CHL00071 tufA elongation factor Tu.
Probab=99.05 E-value=6.4e-10 Score=79.97 Aligned_cols=134 Identities=22% Similarity=0.278 Sum_probs=79.3
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHH-----HHHH-----------HCCCEECCEEE--EECCEEEEEECCCCCCCCCC
Q ss_conf 011244216777530354101454012-----1211-----------00000010266--32986899822642124731
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKI-----ADYP-----------FTTLYPNLGIV--KEGYKEFILADIPGIIKNAH 221 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kI-----a~yp-----------FTT~~P~lGvv--~~~~~~~~i~D~PGlIegA~ 221 (335)
T Consensus 13 vni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTi--d~~~~~~et~~~~~~~iD~PG-----H 85 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAANGGAKGKKYDEIDSAPEEKARGITI--NTAHVEYETENRHYAHVDCPG-----H 85 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCEE--EECEEEEECCCEEEEEEECCC-----H
T ss_conf 999999545883999999986453004513343155323797687369448--802489962875999986796-----7
Q ss_pred CCCCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE-EECCCCCCHHHHHHHHH-H
Q ss_conf 1677512344333----3357887520222211013466678998777667505988999-97465899889999999-9
Q gi|254780648|r 222 QGAGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVG-LSQIDTVDSDTLARKKN-E 295 (335)
Q Consensus 222 ~~~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIV-lNKiDl~~~e~~~~~~~-~ 295 (335)
T Consensus 86 ~------~fv~nmi~Gas~aD~alLVV~A~~G~-~~---QTkEHl~l--~~~lgV~~~IVavnKmD~v~~~~~~e~i~~~ 153 (409)
T CHL00071 86 A------DYVKNMITGAAQMDGAILVVSAADGP-MP---QTKEHILL--AKQVGVPNIVVFLNKEDQVDDEELLELVELE 153 (409)
T ss_pred H------HHHHHHHHHHCCCCCEEEEEECCCCC-CC---CHHHHHHH--HHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8------99999875230158128999868788-50---04999999--9973999365555567985489999999999
Q ss_pred HH---HHCC-----CCEEEEECCCC
Q ss_conf 99---8629-----94899988878
Q gi|254780648|r 296 LA---TQCG-----QVPFEFSSITG 312 (335)
Q Consensus 296 l~---~~~~-----~~vi~ISA~tg 312 (335)
T Consensus 154 i~~~l~~~g~~~~~i~~vp~sa~~~ 178 (409)
T CHL00071 154 VRELLDKYDFPGDEIPIVAGSALLA 178 (409)
T ss_pred HHHHHHHCCCCCCCCEEEECCHHHH
T ss_conf 9999997399845560896521332