HHsearch alignment for GI: 254780648 and conserved domain: COG1217
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].
Probab=98.25 E-value=7.4e-06 Score=55.32 Aligned_cols=151 Identities=25% Similarity=0.283 Sum_probs=88.8
Q ss_pred EECEEEEECCCCCCCEEEEEEC------CCCCHHHHHH----------H-CCCEECCEEEEECCEEEEEECCCCCCCCCC
Q ss_conf 3011244216777530354101------4540121211----------0-000001026632986899822642124731
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVT------RAKPKIADYP----------F-TTLYPNLGIVKEGYKEFILADIPGIIKNAH 221 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls------~ak~kIa~yp----------F-TT~~P~lGvv~~~~~~~~i~D~PGlIegA~ 221 (335)
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKn-Tav~~~~~~INIvDTPGH----- 78 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKN-TAVNYNGTRINIVDTPGH----- 78 (603)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHCCCEEEECC-CEEECCCEEEEEECCCCC-----
T ss_conf 53068999844881028999987316544565201440376423443493898515-246208838987658986-----
Q ss_pred CCCCCHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCCCH--HHH-HHHH
Q ss_conf 167751234433333----5788752022221101346667-8998777667505988999974658998--899-9999
Q gi|254780648|r 222 QGAGIGDRFLKHTER----THVLLHIVSALEENVQAAYQCI-LDELSAYNSELRKKIEIVGLSQIDTVDS--DTL-ARKK 293 (335)
Q Consensus 222 ~~~glG~~FLrhIer----~~vLl~VVD~s~~d~~~~~~~I-~~EL~~y~~~L~~Kp~IIVlNKiDl~~~--e~~-~~~~ 293 (335)
T Consensus 79 A------DFGGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~-----~gL~P-IVVvNKiDrp~Arp~~Vvd~vf 145 (603)
T COG1217 79 A------DFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA-----LGLKP-IVVINKIDRPDARPDEVVDEVF 145 (603)
T ss_pred C------CCCCHHHHHHHHCCEEEEEEECCCC-CCCCHHHHHHHHHH-----CCCCC-EEEEECCCCCCCCHHHHHHHHH
T ss_conf 7------7662545114323348999975558-88731444899997-----49984-8999677899988789999999
Q ss_pred HHHH------HHCCCCEEEEECCCC----------CCHHHHHHHHHHHHHH
Q ss_conf 9999------862994899988878----------8999999999999985
Q gi|254780648|r 294 NELA------TQCGQVPFEFSSITG----------HGIPQILECLHDKIFS 328 (335)
Q Consensus 294 ~~l~------~~~~~~vi~ISA~tg----------~GI~eL~~~I~e~L~~ 328 (335)
T Consensus 146 DLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 146 DLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred HHHHHHCCCHHHCCCEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 999981997455787079854147510158655555316899999975899