HHsearch alignment for GI: 254780648 and conserved domain: COG3854
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown].
Probab=95.27 E-value=0.073 Score=31.10 Aligned_cols=119 Identities=24% Similarity=0.323 Sum_probs=60.9
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCC---CCHHHHHHHHHHH
Q ss_conf 1124421677753035410145401212110000001026632986899822642124731167---7512344333335
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGA---GIGDRFLKHTERT 237 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~---glG~~FLrhIer~ 237 (335)
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~---s~----------g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~-------R- 197 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLL---SD----------GINQFLPKKVGIIDERSEIAGCLNGVPQHGRGR-------R- 197 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---HC----------CCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHH-------H-
T ss_conf 46996599887077999999986---31----------511267732899715004303435886032322-------1-
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 78875202222110134666789987776675059889999746589988999999999986299489998887889999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
T Consensus 198 ------~dVld~cpk~--~gmmmaIrs------m~PEViIvDEIGt~--~d----~~A~~ta~~~GVkli~TaHG~~ied 257 (308)
T COG3854 198 ------MDVLDPCPKA--EGMMMAIRS------MSPEVIIVDEIGTE--ED----ALAILTALHAGVKLITTAHGNGIED 257 (308)
T ss_pred ------HHHCCCCHHH--HHHHHHHHH------CCCCEEEEECCCCH--HH----HHHHHHHHHCCCEEEEEECCCCHHH
T ss_conf ------0104656178--889999995------49957998343647--77----9999999854858999504411777
Q ss_pred HHH
Q ss_conf 999
Q gi|254780648|r 318 ILE 320 (335)
Q Consensus 318 L~~ 320 (335)
T Consensus 258 l~k 260 (308)
T COG3854 258 LIK 260 (308)
T ss_pred HHC
T ss_conf 650