HHsearch alignment for GI: 254780648 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.01 E-value=0.0036 Score=39.04 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=65.1
Q ss_pred EEEEECCCCCCCEEEEEECC-------CCC-HHH----------HH------------HHCCCEE----CCEEEEECCEE
Q ss_conf 12442167775303541014-------540-121----------21------------1000000----10266329868
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTR-------AKP-KIA----------DY------------PFTTLYP----NLGIVKEGYKE 207 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~-------ak~-kIa----------~y------------pFTT~~P----~lGvv~~~~~~ 207 (335)
T Consensus 177 i~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~~~~~D 256 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFD 256 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCC
T ss_conf 99989988757879999999999862676773799980787588999999999997880698578899999999724999
Q ss_pred EEEECCCCCCCCCCCCCCC---HHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 9982264212473116775---123443333357887-520222211013466678998777667505988999974658
Q gi|254780648|r 208 FILADIPGIIKNAHQGAGI---GDRFLKHTERTHVLL-HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDT 283 (335)
Q Consensus 208 ~~i~D~PGlIegA~~~~gl---G~~FLrhIer~~vLl-~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl 283 (335)
T Consensus 257 ~IlIDTAGrs---~~d~~~~~el~~~~~~~~~-~~~~~Lvlsat~~-----~~d~~~i~~~f~~---~~~~~~I~TKlDE 324 (388)
T PRK12723 257 LVLIDTIGKS---PKDFMKLAEMKELLNACGR-DAEFHLAVSSTTK-----TSDIKEIFHQFSP---FSYKTVIFTKLDE 324 (388)
T ss_pred EEEEECCCCC---CCCHHHHHHHHHHHHHCCC-CCEEEEEECCCCC-----HHHHHHHHHHHCC---CCCCEEEEEECCC
T ss_conf 9999589988---5689999999999974189-8459999879899-----9999999998427---9998499983227
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf 99889999999999862994899988878899
Q gi|254780648|r 284 VDSDTLARKKNELATQCGQVPFEFSSITGHGI 315 (335)
Q Consensus 284 ~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI 315 (335)
T Consensus 325 t~~--~G~~l~-~~~~~~~Pi~yit--~GQ~V 351 (388)
T PRK12723 325 TTC--VGNLIS-LIHEMRKEVSYVT--DGQIV 351 (388)
T ss_pred CCC--CCHHHH-HHHHHCCCEEEEE--CCCCC
T ss_conf 898--669999-9999888869993--89968