HHsearch alignment for GI: 254780648 and conserved domain: PRK12727

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.51  E-value=0.0045  Score=38.45  Aligned_cols=140  Identities=16%  Similarity=0.257  Sum_probs=70.5

Q ss_pred             EEEEECCCCCCCEEEEEECCC-----C-CHHH----------HHH-HCCCEECCEEE---------------EECCEEEE
Q ss_conf             124421677753035410145-----4-0121----------211-00000010266---------------32986899
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRA-----K-PKIA----------DYP-FTTLYPNLGIV---------------KEGYKEFI  209 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~a-----k-~kIa----------~yp-FTT~~P~lGvv---------------~~~~~~~~  209 (335)
T Consensus       351 ~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~l~~~~lv  430 (557)
T PRK12727        351 IALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLV  430 (557)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCCCCEE
T ss_conf             78743777673117999999999973998189997266408799999999998397579828999999999983699989


Q ss_pred             EECCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
Q ss_conf             822642124731167751--234433333578875202222110134666789987776675059889999746589988
Q gi|254780648|r  210 LADIPGIIKNAHQGAGIG--DRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD  287 (335)
Q Consensus       210 i~D~PGlIegA~~~~glG--~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e  287 (335)
T Consensus       431 liDTaG~~---~rd~~~~~~~~~l~~~~~~~~-~Lvl~a~~-----~~~~l~~~~~~~~~---~~~~~~i~TKlDE~--~  496 (557)
T PRK12727        431 LIDTAGMG---QRDRALAAQLNWLRAARQVTS-LLVLPANA-----HFSDLDEVVRRFAH---AKPQGVVLTKLDET--G  496 (557)
T ss_pred             EEECCCCC---CCCHHHHHHHHHHHCCCCCCE-EEEEECCC-----CHHHHHHHHHHHCC---CCCCEEEEEECCCC--C
T ss_conf             99499988---469999999998751477635-99996889-----98999999998537---99874899614367--8


Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf             9999999999862994899988878899999
Q gi|254780648|r  288 TLARKKNELATQCGQVPFEFSSITGHGIPQI  318 (335)
Q Consensus       288 ~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL  318 (335)
T Consensus       497 ~~G~~l~~~~~-~~lp~~y~t--~GQ~VPeD  524 (557)
T PRK12727        497 RFGSALSVVVD-HQMPITWVT--DGQRVPDD  524 (557)
T ss_pred             CCCHHHHHHHH-HCCCEEEEC--CCCCCCCC
T ss_conf             70399999999-689828975--89828523