HHsearch alignment for GI: 254780648 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.51 E-value=0.0045 Score=38.45 Aligned_cols=140 Identities=16% Similarity=0.257 Sum_probs=70.5
Q ss_pred EEEEECCCCCCCEEEEEECCC-----C-CHHH----------HHH-HCCCEECCEEE---------------EECCEEEE
Q ss_conf 124421677753035410145-----4-0121----------211-00000010266---------------32986899
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRA-----K-PKIA----------DYP-FTTLYPNLGIV---------------KEGYKEFI 209 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~a-----k-~kIa----------~yp-FTT~~P~lGvv---------------~~~~~~~~ 209 (335)
T Consensus 351 ~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~l~~~~lv 430 (557)
T PRK12727 351 IALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLV 430 (557)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCCCCEE
T ss_conf 78743777673117999999999973998189997266408799999999998397579828999999999983699989
Q ss_pred EECCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
Q ss_conf 822642124731167751--234433333578875202222110134666789987776675059889999746589988
Q gi|254780648|r 210 LADIPGIIKNAHQGAGIG--DRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD 287 (335)
Q Consensus 210 i~D~PGlIegA~~~~glG--~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e 287 (335)
T Consensus 431 liDTaG~~---~rd~~~~~~~~~l~~~~~~~~-~Lvl~a~~-----~~~~l~~~~~~~~~---~~~~~~i~TKlDE~--~ 496 (557)
T PRK12727 431 LIDTAGMG---QRDRALAAQLNWLRAARQVTS-LLVLPANA-----HFSDLDEVVRRFAH---AKPQGVVLTKLDET--G 496 (557)
T ss_pred EEECCCCC---CCCHHHHHHHHHHHCCCCCCE-EEEEECCC-----CHHHHHHHHHHHCC---CCCCEEEEEECCCC--C
T ss_conf 99499988---469999999998751477635-99996889-----98999999998537---99874899614367--8
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 9999999999862994899988878899999
Q gi|254780648|r 288 TLARKKNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 288 ~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
T Consensus 497 ~~G~~l~~~~~-~~lp~~y~t--~GQ~VPeD 524 (557)
T PRK12727 497 RFGSALSVVVD-HQMPITWVT--DGQRVPDD 524 (557)
T ss_pred CCCHHHHHHHH-HCCCEEEEC--CCCCCCCC
T ss_conf 70399999999-689828975--89828523