HHsearch alignment for GI: 254780648 and conserved domain: TIGR00231
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.19 E-value=9e-11 Score=85.11 Aligned_cols=157 Identities=22% Similarity=0.219 Sum_probs=108.8
Q ss_pred ECEEEEECCCCCCCEEEEEECCCC-CHHHHHH--HCCCEECCEEEEECC-----------EEEEEECCCCC---CCCCCC
Q ss_conf 011244216777530354101454-0121211--000000102663298-----------68998226421---247311
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAK-PKIADYP--FTTLYPNLGIVKEGY-----------KEFILADIPGI---IKNAHQ 222 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak-~kIa~yp--FTT~~P~lGvv~~~~-----------~~~~i~D~PGl---IegA~~ 222 (335)
T Consensus 4 ~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~d~~G~~~~~~~~~~ 83 (186)
T TIGR00231 4 IKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTITGATFQWGYKFNLLDTPGLHRQEDYDAL 83 (186)
T ss_pred EEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHH
T ss_conf 05899734776604555445410120010232333200000011345580234343102427898625771135555445
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH------HHHHHHHHHH
Q ss_conf 6775123443333357887520222211013466678998777667505988999974658998------8999999999
Q gi|254780648|r 223 GAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS------DTLARKKNEL 296 (335)
Q Consensus 223 ~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~------e~~~~~~~~l 296 (335)
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 157 (186)
T TIGR00231 84 RRLYYPEVLSSLEVLDLVILVLDVEDG-LEKDTKEIIHHADK-----YGVPILLVGNKIDLKDEKPGYFVDLKPHLASLF 157 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHH
T ss_conf 433223445444333333322211100-10256778753221-----274169985133655467540100003455555
Q ss_pred HHHCCCC-EEEEECCCCCCHHHHHHHH
Q ss_conf 9862994-8999888788999999999
Q gi|254780648|r 297 ATQCGQV-PFEFSSITGHGIPQILECL 322 (335)
Q Consensus 297 ~~~~~~~-vi~ISA~tg~GI~eL~~~I 322 (335)
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (186)
T TIGR00231 158 AKLNGEPHFIPLSAETGKGIDSLFGLV 184 (186)
T ss_pred HHHCCCCCEEECCHHHHCCHHHHHHHH
T ss_conf 542366401111001110045566654