HHsearch alignment for GI: 254780648 and conserved domain: TIGR01394
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=98.23 E-value=7.8e-07 Score=61.26 Aligned_cols=149 Identities=21% Similarity=0.262 Sum_probs=81.2
Q ss_pred EEEEECCCCCCCEEEEEECC-------C-CCHHHHHH--HCCCEECCE--------EEEECC----EEEEEECCCCCCCC
Q ss_conf 12442167775303541014-------5-40121211--000000102--------663298----68998226421247
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTR-------A-KPKIADYP--FTTLYPNLG--------IVKEGY----KEFILADIPGIIKN 219 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~-------a-k~kIa~yp--FTT~~P~lG--------vv~~~~----~~~~i~D~PGlIeg 219 (335)
T Consensus 4 IAIIAHVDHGKTTLVD~LL~Qsgf~f~~~~~~~~ER~MDSNDLErERGITILaKNTav~y~g~dG~~~INIvDTPG---- 79 (609)
T TIGR01394 4 IAIIAHVDHGKTTLVDALLKQSGFTFRADNEAVAERVMDSNDLERERGITILAKNTAVRYNGKDGVTKINIVDTPG---- 79 (609)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCCCEEEEEEECCCCCEEEEEEEECCC----
T ss_conf 8999880699436898888876588641588321354067652100155201300366252889718997781689----
Q ss_pred CCCCCCCHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCCCH--HHHHHH
Q ss_conf 31167751234433333----5788752022221101346667-8998777667505988999974658998--899999
Q gi|254780648|r 220 AHQGAGIGDRFLKHTER----THVLLHIVSALEENVQAAYQCI-LDELSAYNSELRKKIEIVGLSQIDTVDS--DTLARK 292 (335)
Q Consensus 220 A~~~~glG~~FLrhIer----~~vLl~VVD~s~~d~~~~~~~I-~~EL~~y~~~L~~Kp~IIVlNKiDl~~~--e~~~~~ 292 (335)
T Consensus 80 -HA------DFGGEVERvL~MVDGvlLlVDA~EG-PMPQTrFVL~KAL~-----~gL-kPIVViNKiDrp~ARP~eV~d~ 145 (609)
T TIGR01394 80 -HA------DFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE-----LGL-KPIVVINKIDRPSARPDEVVDE 145 (609)
T ss_pred -CC------CCCCEEEEECEEEEEEEEEEECCCC-CCCCCHHHHHHHHH-----CCC-CEEEEECCCCCCCCCHHHHHHH
T ss_conf -88------7886588733024058999857888-98853478999995-----689-3699971347887883788757
Q ss_pred HHHHHH-------HCCCCEEEEECC---------------CCCCHHHHHHHHHHHHHH
Q ss_conf 999998-------629948999888---------------788999999999999985
Q gi|254780648|r 293 KNELAT-------QCGQVPFEFSSI---------------TGHGIPQILECLHDKIFS 328 (335)
Q Consensus 293 ~~~l~~-------~~~~~vi~ISA~---------------tg~GI~eL~~~I~e~L~~ 328 (335)
T Consensus 146 vFDLF~~LgA~deQLDFP~vYASa~~G~A~l~~~~dg~~~~~~~m~PLFd~I~~hvPa 203 (609)
T TIGR01394 146 VFDLFIELGADDEQLDFPIVYASARAGWASLDKDKDGLDDDSEDMAPLFDAILRHVPA 203 (609)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 8788885388800101256766523672014466577887220178999898640688