HHsearch alignment for GI: 254780648 and conserved domain: TIGR03596
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.88 E-value=3.8e-09 Score=75.26 Aligned_cols=93 Identities=11% Similarity=0.167 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 34433333578875202222110134666789987776675059889999746589988999999999986299489998
Q gi|254780648|r 229 RFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 229 ~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
T Consensus 14 ~l~~~l~~~DvileV~DAR~--Pl~~~---n~~l~~~~---~~K~~ilvlNK~DL~~~~~~~~w~~~~~~~-~~~~~~~s 84 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARI--PLSSR---NPMIDEIR---GNKPRLIVLNKADLADPAVTKQWLKYFEQK-GIKALAIN 84 (276)
T ss_pred HHHHHHHHCCEEEEEEECCC--CCCCC---CHHHHHHH---CCCCEEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEEEH
T ss_conf 99999875999999986778--87868---97599986---699679997343459999999999999843-99189864
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8878899999999999998545
Q gi|254780648|r 309 SITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 309 A~tg~GI~eL~~~I~e~L~~~r 330 (335)
T Consensus 85 a~~~~~~~~l~~~~~~~~~~~~ 106 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred HCCCCCHHHHHHHHHHHHHHHH
T ss_conf 3074538999999999999988