HHsearch alignment for GI: 254780648 and conserved domain: cd00877
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.61 E-value=2.5e-15 Score=112.73 Aligned_cols=152 Identities=14% Similarity=0.127 Sum_probs=107.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------663298--6899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~f~-~~~-----~~Tig~~~~~~~~~~~~~~v~l~iwDtaGqe~----~~~l~~~---y 69 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTGEFE-KKY-----VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK----FGGLRDG---Y 69 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-CCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCHH----HHHHHHH---H
T ss_conf 999999998889999999839999-986-----87325567999999999799999997578715----6668788---7
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 33357887520222211013466678998777667505988999974658998899999999998629948999888788
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGH 313 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~ 313 (335)
T Consensus 70 ~~~a~~~ilvyDvt~~~Sf~~v~~w~~~i~~~~~---~~piilVgNK~Dl~~~~~-~~~~~~~~~~~~~~~~EtSAk~~~ 145 (166)
T cd00877 70 YIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRKV-KAKQITFHRKKNLQYYEISAKSNY 145 (166)
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCCC-CHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 4006579984378988899999999999998689---998999998621750366-799999999789989998458990
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998545
Q gi|254780648|r 314 GIPQILECLHDKIFSIR 330 (335)
Q Consensus 314 GI~eL~~~I~e~L~~~r 330 (335)
T Consensus 146 nV~e~F~~la~~il~~~ 162 (166)
T cd00877 146 NFEKPFLWLARKLLGNP 162 (166)
T ss_pred CHHHHHHHHHHHHHCCC
T ss_conf 98999999999984289