HHsearch alignment for GI: 254780648 and conserved domain: cd00880
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=100.00 E-value=1.2e-33 Score=223.89 Aligned_cols=157 Identities=24% Similarity=0.290 Sum_probs=127.1
Q ss_pred EEECCCCCCCEEEEEECCCCC-HHHHHHHCCCEECCEEEEEC-CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 442167775303541014540-12121100000010266329-8689982264212473116775123443333357887
Q gi|254780648|r 164 IIGLPNAGKSTFLASVTRAKP-KIADYPFTTLYPNLGIVKEG-YKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 164 lVG~PNaGKSTLln~ls~ak~-kIa~ypFTT~~P~lGvv~~~-~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~~~~~~~~D~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEE
T ss_conf 91979989999999995899610169899865645899995478659997279852223101689999999998689899
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH----HHHHCCCCEEEEECCCCCCHHH
Q ss_conf 520222211013466678998777667505988999974658998899999999----9986299489998887889999
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNE----LATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~----l~~~~~~~vi~ISA~tg~GI~e 317 (335)
T Consensus 81 ~viD~~~~~~~~~~~~l-~~l~~-----~~~p~i~v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~ 154 (163)
T cd00880 81 FVVDADLRADEEEEKLL-ELLRE-----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEECCCCCCHHHHHHH-HHHHH-----HCCCEEEEEECEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 99878999755669999-99997-----1974278853420678789999999999998767998599997898979999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780648|r 318 ILECLHDKI 326 (335)
Q Consensus 318 L~~~I~e~L 326 (335)
T Consensus 155 L~~~i~e~L 163 (163)
T cd00880 155 LREALIEAL 163 (163)
T ss_pred HHHHHHHHC
T ss_conf 999999519