HHsearch alignment for GI: 254780648 and conserved domain: cd00881
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=1.3e-21 Score=150.79 Aligned_cols=150 Identities=20% Similarity=0.217 Sum_probs=108.0
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHH----------HH------HHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCC
Q ss_conf 112442167775303541014540121----------21------10000001026632986899822642124731167
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIA----------DY------PFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGA 224 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa----------~y------pFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~ 224 (335)
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPGh-----~-- 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGH-----E-- 73 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCCC-----H--
T ss_conf 989991799899999999997647235686258885057778886384132227999989989999969981-----8--
Q ss_pred CCHHHHH----HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 7512344----333335788752022221101346667899877766750598899997465899889999999999862
Q gi|254780648|r 225 GIGDRFL----KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQC 300 (335)
Q Consensus 225 glG~~FL----rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~ 300 (335)
T Consensus 74 ----~f~~~~~~~l~~aD~ailvVda~~G~~~qt-~~~~~~~~~-----~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l 143 (189)
T cd00881 74 ----DFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE-----GGLPIIVAINKIDRVGEEDLEEVLREIKELL 143 (189)
T ss_pred ----HHHHHHHHHHHHCCEEEEEEECCCCCCHHH-HHHHHHHHH-----CCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf ----899999999864685699998798998789-999999997-----6998799998971877562999999999998
Q ss_pred -----------------CCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf -----------------994899988878899999999999998
Q gi|254780648|r 301 -----------------GQVPFEFSSITGHGIPQILECLHDKIF 327 (335)
Q Consensus 301 -----------------~~~vi~ISA~tg~GI~eL~~~I~e~L~ 327 (335)
T Consensus 144 ~~~~~~~~~~~~~~~~~~~piv~iSA~~G~gv~~Lld~i~~~lP 187 (189)
T cd00881 144 GLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred HHHCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 75321023211012588775999888678697999999997687