HHsearch alignment for GI: 254780648 and conserved domain: cd01849

>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.78  E-value=2.2e-08  Score=70.67  Aligned_cols=88  Identities=22%  Similarity=0.235  Sum_probs=65.6

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf             78875202222110134666789987776675059889999746589988999999999986299489998887889999
Q gi|254780648|r  238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQ  317 (335)
Q Consensus       238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~e  317 (335)
T Consensus         1 D~il~VvDaR~pl~~~~~~-~~~~l~----~~~~K~~ilvlNK~Dl~~~~~~~~w~~~~~~~~~~~~~~~S~~~~~~~~~   75 (155)
T cd01849           1 DVILEVLDARDPLGTRSPD-IERVLI----KEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEK   75 (155)
T ss_pred             CEEEEEEECCCCCCCCCHH-HHHHHH----HCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHH
T ss_conf             9899999687999988999-999998----65899489997673458989999999999962998516711026745688


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999998545
Q gi|254780648|r  318 ILECLHDKIFSIR  330 (335)
Q Consensus       318 L~~~I~e~L~~~r  330 (335)
T Consensus        76 ~~~~~~~~~~~~~   88 (155)
T cd01849          76 KESAFTKQTNSNL   88 (155)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999998715666