HHsearch alignment for GI: 254780648 and conserved domain: cd01857

>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.27  E-value=1e-12  Score=96.92  Aligned_cols=54  Identities=28%  Similarity=0.480  Sum_probs=44.2

Q ss_pred             CEEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECCEEEEECCEEEEEECCCCCC
Q ss_conf             11244216777530354101454-0121211000000102663298689982264212
Q gi|254780648|r  161 DIGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNLGIVKEGYKEFILADIPGII  217 (335)
Q Consensus       161 DVglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlI  217 (335)
T Consensus        85 ~i~ivG~PNVGKSSlIN~L~g~k~~~v~~~PG~Tr~~~--~i~~-~~~i~liDTPGi~  139 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQ--TIFL-TPTITLCDCPGLV  139 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEE--EEEE-CCCEEEEECCCCC
T ss_conf             68997788866999999985886687659994157668--9996-8999999898868