HHsearch alignment for GI: 254780648 and conserved domain: cd01857
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.27 E-value=1e-12 Score=96.92 Aligned_cols=54 Identities=28% Similarity=0.480 Sum_probs=44.2
Q ss_pred CEEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECCEEEEECCEEEEEECCCCCC
Q ss_conf 11244216777530354101454-0121211000000102663298689982264212
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNLGIVKEGYKEFILADIPGII 217 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlI 217 (335)
T Consensus 85 ~i~ivG~PNVGKSSlIN~L~g~k~~~v~~~PG~Tr~~~--~i~~-~~~i~liDTPGi~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQ--TIFL-TPTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEE--EEEE-CCCEEEEECCCCC
T ss_conf 68997788866999999985886687659994157668--9996-8999999898868