HHsearch alignment for GI: 254780648 and conserved domain: cd01857
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.30 E-value=1.8e-06 Score=59.11 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 34433333578875202222110134666789987776675059889999746589988999999999986299489998
Q gi|254780648|r 229 RFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 229 ~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
T Consensus 4 q~~~~ie~aDvVleV~DaR~p~~s~~-~~l~~~l~~~---~~~Kp~ilVlNK~DL~~~~~~~~w~~~~~~-~~~~~~~~s 78 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEV---DPRKKNILLLNKADLLTEEQRKAWAEYFKK-EGIVVVFFS 78 (141)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCCCC-HHHHHHHHHH---CCCCCEEEEEECCCCCCHHHHHHHHHHHHH-CCCCEEEEE
T ss_conf 99999976999999998988887689-9999999984---389957999865004999999999999984-499489984
Q ss_pred CCCCC
Q ss_conf 88788
Q gi|254780648|r 309 SITGH 313 (335)
Q Consensus 309 A~tg~ 313 (335)
T Consensus 79 ~~~~~ 83 (141)
T cd01857 79 ALKEN 83 (141)
T ss_pred CCCCC
T ss_conf 26776