HHsearch alignment for GI: 254780648 and conserved domain: cd01858
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.75 E-value=2.7e-08 Score=70.15 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 34433333578875202222110134666789987776675059889999746589988999999999986299489998
Q gi|254780648|r 229 RFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 229 ~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
T Consensus 1 ql~~~i~~aD~vl~V~DaR~p~ss~n-~~l~~~lr~---~~~~K~~i~VlNK~Dl~~~~~~~~w~~~l~~~~~~~~~~~s 76 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRC-KHVEEYLKK---EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHAS 76 (157)
T ss_pred CHHHHHHHCCEEEEEEECCCCCCCCC-HHHHHHHHH---CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 98897875999999988988888789-899999875---37999789999894479878999999986488973999953
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q ss_conf 8878899999999999998
Q gi|254780648|r 309 SITGHGIPQILECLHDKIF 327 (335)
Q Consensus 309 A~tg~GI~eL~~~I~e~L~ 327 (335)
T Consensus 77 ~~~~~~~~~l~~~l~~~~~ 95 (157)
T cd01858 77 INNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 2386468999999998765