HHsearch alignment for GI: 254780648 and conserved domain: cd01860

>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.62  E-value=6e-16  Score=116.49  Aligned_cols=150  Identities=16%  Similarity=0.182  Sum_probs=105.7

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             12442167775303541014540121211000000102------6632986--899822642124731167751234433
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKH  233 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrh  233 (335)
T Consensus         4 ivviGd~~vGKTsli~r~~~~~f-~~~-----~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e----~~~~~~~~---~   70 (163)
T cd01860           4 LVLLGDSSVGKSSLVLRFVKNEF-SEN-----QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE----RYRSLAPM---Y   70 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCC-CCC-----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCH----HHHHHHHH---H
T ss_conf             99999599689999999943989-998-----68866678899999999999999999799971----00278898---8


Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             3335788752022221101346667899877766750598899997465899889-999999999862994899988878
Q gi|254780648|r  234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSITG  312 (335)
Q Consensus       234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~tg  312 (335)
T Consensus        71 ~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~--~~~~iilVgnK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~  148 (163)
T cd01860          71 YRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTG  148 (163)
T ss_pred             HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCEEEEEEECCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             5167714999818997999999999999998559--87236775533575650899999999999982997999862659


Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             89999999999999
Q gi|254780648|r  313 HGIPQILECLHDKI  326 (335)
Q Consensus       313 ~GI~eL~~~I~e~L  326 (335)
T Consensus       149 ~nV~e~F~~l~~~i  162 (163)
T cd01860         149 ENVNELFTEIAKKL  162 (163)
T ss_pred             CCHHHHHHHHHHHC
T ss_conf             07899999999858