HHsearch alignment for GI: 254780648 and conserved domain: cd01868

>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.63  E-value=9e-16  Score=115.45  Aligned_cols=151  Identities=18%  Similarity=0.168  Sum_probs=106.3

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             12442167775303541014540121211000000102------6632986--899822642124731167751234433
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKH  233 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrh  233 (335)
T Consensus         6 iv~iGd~~VGKTsli~r~~~~~f-~~~~-----~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e----~~~~~~~---~~   72 (165)
T cd01868           6 IVLIGDSGVGKSNLLSRFTRNEF-NLDS-----KSTIGVEFATRSIQIDGKTIKAQIWDTAGQE----RYRAITS---AY   72 (165)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCH----HHHHHHH---HH
T ss_conf             99999999789999999972989-9988-----9874478789999999999999999899972----1267899---87


Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             3335788752022221101346667899877766750598899997465899889-999999999862994899988878
Q gi|254780648|r  234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSITG  312 (335)
Q Consensus       234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~tg  312 (335)
T Consensus        73 ~~~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~--~~~~iilVgnK~DL~~~r~Vs~~e~~~~a~~~~~~~~E~SAk~g  150 (165)
T cd01868          73 YRGAVGALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDG  150 (165)
T ss_pred             HHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             3320514898626988999999999999998555--77359870234786885788899999999985997999678889


Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             899999999999998
Q gi|254780648|r  313 HGIPQILECLHDKIF  327 (335)
Q Consensus       313 ~GI~eL~~~I~e~L~  327 (335)
T Consensus       151 ~nV~e~F~~l~~~i~  165 (165)
T cd01868         151 TNVEEAFKQLLTEIY  165 (165)
T ss_pred             CCHHHHHHHHHHHHC
T ss_conf             298999999999869