HHsearch alignment for GI: 254780648 and conserved domain: cd01868
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.63 E-value=9e-16 Score=115.45 Aligned_cols=151 Identities=18% Similarity=0.168 Sum_probs=106.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------6632986--899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
T Consensus 6 iv~iGd~~VGKTsli~r~~~~~f-~~~~-----~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e----~~~~~~~---~~ 72 (165)
T cd01868 6 IVLIGDSGVGKSNLLSRFTRNEF-NLDS-----KSTIGVEFATRSIQIDGKTIKAQIWDTAGQE----RYRAITS---AY 72 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCH----HHHHHHH---HH
T ss_conf 99999999789999999972989-9988-----9874478789999999999999999899972----1267899---87
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 3335788752022221101346667899877766750598899997465899889-999999999862994899988878
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSITG 312 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~tg 312 (335)
T Consensus 73 ~~~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~--~~~~iilVgnK~DL~~~r~Vs~~e~~~~a~~~~~~~~E~SAk~g 150 (165)
T cd01868 73 YRGAVGALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDG 150 (165)
T ss_pred HHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 3320514898626988999999999999998555--77359870234786885788899999999985997999678889
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 899999999999998
Q gi|254780648|r 313 HGIPQILECLHDKIF 327 (335)
Q Consensus 313 ~GI~eL~~~I~e~L~ 327 (335)
T Consensus 151 ~nV~e~F~~l~~~i~ 165 (165)
T cd01868 151 TNVEEAFKQLLTEIY 165 (165)
T ss_pred CCHHHHHHHHHHHHC
T ss_conf 298999999999869