HHsearch alignment for GI: 254780648 and conserved domain: cd01870
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.55 E-value=2.5e-14 Score=106.69 Aligned_cols=154 Identities=17% Similarity=0.136 Sum_probs=100.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001026632986--899822642124731167751234433333578
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
T Consensus 4 i~liGd~~VGKTsli~r~~~~~F-~~~y~pTi~~~~~~~i~~~~~~v~l~iwDtaG~e~----~~~~~~~---~~~~a~~ 75 (175)
T cd01870 4 LVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED----YDRLRPL---SYPDTDV 75 (175)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC----CCCCHHH---HHCCCCE
T ss_conf 99999899669999999970989-99847843689999999999999999997776613----2324044---3148878
Q ss_pred HHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-------------HHHHHHHHHHCCC-CE
Q ss_conf 87520222211013466-678998777667505988999974658998899-------------9999999986299-48
Q gi|254780648|r 240 LLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-------------ARKKNELATQCGQ-VP 304 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-------------~~~~~~l~~~~~~-~v 304 (335)
T Consensus 76 ~ilvydi~~~~Sf~~~~~~w~~~i~~~~~---~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~eg~~~a~~~~~~~f 152 (175)
T cd01870 76 ILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGY 152 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 99998659879999999999999997298---998999987243343323456665402556689999999997499789
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998887889999999999999
Q gi|254780648|r 305 FEFSSITGHGIPQILECLHDKI 326 (335)
Q Consensus 305 i~ISA~tg~GI~eL~~~I~e~L 326 (335)
T Consensus 153 ~EtSAk~~~nV~e~Fe~~~k~~ 174 (175)
T cd01870 153 MECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEECCCCCCCHHHHHHHHHHHH
T ss_conf 9976899979899999999986