HHsearch alignment for GI: 254780648 and conserved domain: cd01870

>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.55  E-value=2.5e-14  Score=106.69  Aligned_cols=154  Identities=17%  Similarity=0.136  Sum_probs=100.6

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             124421677753035410145401212110000001026632986--899822642124731167751234433333578
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKHTERTHV  239 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v  239 (335)
T Consensus         4 i~liGd~~VGKTsli~r~~~~~F-~~~y~pTi~~~~~~~i~~~~~~v~l~iwDtaG~e~----~~~~~~~---~~~~a~~   75 (175)
T cd01870           4 LVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED----YDRLRPL---SYPDTDV   75 (175)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCC-CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC----CCCCHHH---HHCCCCE
T ss_conf             99999899669999999970989-99847843689999999999999999997776613----2324044---3148878


Q ss_pred             HHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-------------HHHHHHHHHHCCC-CE
Q ss_conf             87520222211013466-678998777667505988999974658998899-------------9999999986299-48
Q gi|254780648|r  240 LLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-------------ARKKNELATQCGQ-VP  304 (335)
Q Consensus       240 Ll~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-------------~~~~~~l~~~~~~-~v  304 (335)
T Consensus        76 ~ilvydi~~~~Sf~~~~~~w~~~i~~~~~---~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~eg~~~a~~~~~~~f  152 (175)
T cd01870          76 ILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGY  152 (175)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEE
T ss_conf             99998659879999999999999997298---998999987243343323456665402556689999999997499789


Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             9998887889999999999999
Q gi|254780648|r  305 FEFSSITGHGIPQILECLHDKI  326 (335)
Q Consensus       305 i~ISA~tg~GI~eL~~~I~e~L  326 (335)
T Consensus       153 ~EtSAk~~~nV~e~Fe~~~k~~  174 (175)
T cd01870         153 MECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             EEECCCCCCCHHHHHHHHHHHH
T ss_conf             9976899979899999999986