HHsearch alignment for GI: 254780648 and conserved domain: cd01881
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=100.00 E-value=6.3e-43 Score=280.05 Aligned_cols=163 Identities=39% Similarity=0.655 Sum_probs=142.9
Q ss_pred EEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEEC-CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 44216777530354101454012121100000010266329-86899822642124731167751234433333578875
Q gi|254780648|r 164 IIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEG-YKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLH 242 (335)
Q Consensus 164 lVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~-~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl~ 242 (335)
T Consensus 1 ivG~PNvGKSTL~N~Lt~~~~~v~~~pgTTr~~~~g~~~~~~~~~i~~~DtpGi~~~~~~~~~~~~~~l~~~~~~d~il~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 96999888999999996899603078996761246799947996699995787545733787899999987410889999
Q ss_pred HCCCCCC------CHHHHHHHHHHHHHHHHHH-----HCCCCEEEEEECCCCCCHHHHHHHHHH-HHHHCCCCEEEEECC
Q ss_conf 2022221------1013466678998777667-----505988999974658998899999999-998629948999888
Q gi|254780648|r 243 IVSALEE------NVQAAYQCILDELSAYNSE-----LRKKIEIVGLSQIDTVDSDTLARKKNE-LATQCGQVPFEFSSI 310 (335)
Q Consensus 243 VVD~s~~------d~~~~~~~I~~EL~~y~~~-----L~~Kp~IIVlNKiDl~~~e~~~~~~~~-l~~~~~~~vi~ISA~ 310 (335)
T Consensus 81 vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ii~iSA~ 160 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAK 160 (176)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECEECCCHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 99898765545445899999999999971156655543269719999686034700315999999974689958999777
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 7889999999999999
Q gi|254780648|r 311 TGHGIPQILECLHDKI 326 (335)
Q Consensus 311 tg~GI~eL~~~I~e~L 326 (335)
T Consensus 161 ~~~gi~~L~~~i~~~L 176 (176)
T cd01881 161 TEEGLDELIRAIYELL 176 (176)
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 8879999999999659