HHsearch alignment for GI: 254780648 and conserved domain: cd01881

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=100.00  E-value=6.3e-43  Score=280.05  Aligned_cols=163  Identities=39%  Similarity=0.655  Sum_probs=142.9

Q ss_pred             EEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEEC-CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             44216777530354101454012121100000010266329-86899822642124731167751234433333578875
Q gi|254780648|r  164 IIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEG-YKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLH  242 (335)
Q Consensus       164 lVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~-~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl~  242 (335)
T Consensus         1 ivG~PNvGKSTL~N~Lt~~~~~v~~~pgTTr~~~~g~~~~~~~~~i~~~DtpGi~~~~~~~~~~~~~~l~~~~~~d~il~   80 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH   80 (176)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             96999888999999996899603078996761246799947996699995787545733787899999987410889999


Q ss_pred             HCCCCCC------CHHHHHHHHHHHHHHHHHH-----HCCCCEEEEEECCCCCCHHHHHHHHHH-HHHHCCCCEEEEECC
Q ss_conf             2022221------1013466678998777667-----505988999974658998899999999-998629948999888
Q gi|254780648|r  243 IVSALEE------NVQAAYQCILDELSAYNSE-----LRKKIEIVGLSQIDTVDSDTLARKKNE-LATQCGQVPFEFSSI  310 (335)
Q Consensus       243 VVD~s~~------d~~~~~~~I~~EL~~y~~~-----L~~Kp~IIVlNKiDl~~~e~~~~~~~~-l~~~~~~~vi~ISA~  310 (335)
T Consensus        81 vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ii~iSA~  160 (176)
T cd01881          81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAK  160 (176)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECEECCCHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             99898765545445899999999999971156655543269719999686034700315999999974689958999777


Q ss_pred             CCCCHHHHHHHHHHHH
Q ss_conf             7889999999999999
Q gi|254780648|r  311 TGHGIPQILECLHDKI  326 (335)
Q Consensus       311 tg~GI~eL~~~I~e~L  326 (335)
T Consensus       161 ~~~gi~~L~~~i~~~L  176 (176)
T cd01881         161 TEEGLDELIRAIYELL  176 (176)
T ss_pred             CCCCHHHHHHHHHHHC
T ss_conf             8879999999999659