HHsearch alignment for GI: 254780648 and conserved domain: cd01883
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.32 E-value=5.9e-12 Score=92.28 Aligned_cols=145 Identities=23% Similarity=0.320 Sum_probs=84.2
Q ss_pred CEEEEECCCCCCCEEEEEE---CCCC-----------CH-HH----HHH------------HCCCEECCEEEEECCEEEE
Q ss_conf 1124421677753035410---1454-----------01-21----211------------0000001026632986899
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASV---TRAK-----------PK-IA----DYP------------FTTLYPNLGIVKEGYKEFI 209 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~l---s~ak-----------~k-Ia----~yp------------FTT~~P~lGvv~~~~~~~~ 209 (335)
T Consensus 1 Ni~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~~~~~~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEECCEEEE
T ss_conf 98999668998999999999985997688999999999854998750556613898798589258858999984993699
Q ss_pred EECCCCCCCCCCCCCCCHHHHHHHHH----HHHHHHHHCCCCCCCHHHHHH---HHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 82264212473116775123443333----357887520222211013466---67899877766750598899997465
Q gi|254780648|r 210 LADIPGIIKNAHQGAGIGDRFLKHTE----RTHVLLHIVSALEENVQAAYQ---CILDELSAYNSELRKKIEIVGLSQID 282 (335)
Q Consensus 210 i~D~PGlIegA~~~~glG~~FLrhIe----r~~vLl~VVD~s~~d~~~~~~---~I~~EL~~y~~~L~~Kp~IIVlNKiD 282 (335)
T Consensus 81 iiDtPGH-----------~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l-~~~lGik~iIVavNKMD 148 (219)
T cd01883 81 ILDAPGH-----------RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALL-ARTLGVKQLIVAVNKMD 148 (219)
T ss_pred EEECCCC-----------HHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH-HHHCCCCEEEEEEECCC
T ss_conf 9878972-----------66788999877531668999985767510366777659999999-99849974899998753
Q ss_pred CCC----HHHHHHHHHHHH---HHCC-----CCEEEEECCCCCCHHH
Q ss_conf 899----889999999999---8629-----9489998887889999
Q gi|254780648|r 283 TVD----SDTLARKKNELA---TQCG-----QVPFEFSSITGHGIPQ 317 (335)
Q Consensus 283 l~~----~e~~~~~~~~l~---~~~~-----~~vi~ISA~tg~GI~e 317 (335)
T Consensus 149 ~v~~~y~~~rf~~i~~~~~~~l~~~g~~~~~~~~IPiSa~~GdNi~~ 195 (219)
T cd01883 149 DVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 68865259999999999999999829995661599933676630466