HHsearch alignment for GI: 254780648 and conserved domain: cd01888
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.59 E-value=8.8e-15 Score=109.44 Aligned_cols=152 Identities=21% Similarity=0.228 Sum_probs=92.1
Q ss_pred CEEEEECCCCCCCEEEEEECCCCC-------------HHH--H--------------HHHCCCEECCEEE-------EEC
Q ss_conf 112442167775303541014540-------------121--2--------------1100000010266-------329
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKP-------------KIA--D--------------YPFTTLYPNLGIV-------KEG 204 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~-------------kIa--~--------------ypFTT~~P~lGvv-------~~~ 204 (335)
T Consensus 2 Ni~iiGHVDhGKSTLi~~L~g~~~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCC
T ss_conf 69999885787999999970851244078886776031114566665111212231011110124421453145654311
Q ss_pred CEEEEEECCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 868998226421247311677512344333----3357887520222211013466678998777667505988999974
Q gi|254780648|r 205 YKEFILADIPGIIKNAHQGAGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQ 280 (335)
Q Consensus 205 ~~~~~i~D~PGlIegA~~~~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNK 280 (335)
T Consensus 82 ~r~~tiiD~PG-----H------~df~~nmi~Gas~aD~aiLvVdA~eG~~~~--QT~eH-~~l-~~~lgv~~iIV~vNK 146 (203)
T cd01888 82 VRHVSFVDCPG-----H------EILMATMLSGAAVMDGALLLIAANEPCPQP--QTSEH-LAA-LEIMGLKHIIIVQNK 146 (203)
T ss_pred EEEEEEEECCC-----H------HHHHHHHHHHHHHCCEEEEEEECCCCCCHH--HHHHH-HHH-HHHCCCCCEEEEEEC
T ss_conf 24799986898-----7------999999997664347668986436677507--79999-999-998499863677507
Q ss_pred CCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 65899889999999999862------994899988878899999999999998
Q gi|254780648|r 281 IDTVDSDTLARKKNELATQC------GQVPFEFSSITGHGIPQILECLHDKIF 327 (335)
Q Consensus 281 iDl~~~e~~~~~~~~l~~~~------~~~vi~ISA~tg~GI~eL~~~I~e~L~ 327 (335)
T Consensus 147 mDlv~~~~~~~~~~ei~~~l~~~~~~~~~iIPiSA~~G~NI~~ll~~i~~~ip 199 (203)
T cd01888 147 IDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77788678999999999985521689985999147889799999999986782