HHsearch alignment for GI: 254780648 and conserved domain: cd01891
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.55 E-value=5.3e-14 Score=104.71 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=93.8
Q ss_pred ECEEEEECCCCCCCEEEEEE---CCCCC---HH----HHHH------HCCCEECCEEEEECCEEEEEECCCCCCCCCCCC
Q ss_conf 01124421677753035410---14540---12----1211------000000102663298689982264212473116
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASV---TRAKP---KI----ADYP------FTTLYPNLGIVKEGYKEFILADIPGIIKNAHQG 223 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~l---s~ak~---kI----a~yp------FTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~ 223 (335)
T Consensus 3 RNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH------- 75 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH------- 75 (194)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCC-------
T ss_conf 7899990689879999999999748763046521686147588887287633458999989988999989984-------
Q ss_pred CCCHHHHHHH----HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH--HHHHHHHHHH
Q ss_conf 7751234433----333578875202222110134666789987776675059889999746589988--9999999999
Q gi|254780648|r 224 AGIGDRFLKH----TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD--TLARKKNELA 297 (335)
Q Consensus 224 ~glG~~FLrh----Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e--~~~~~~~~l~ 297 (335)
T Consensus 76 ----~dF~~~~~~~~~~~D~ailVVdA~~G-v~~QT~~~l~~a~~-----~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~ 145 (194)
T cd01891 76 ----ADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE-----LGLKPIVVINKIDRPDARPEEVVDEVFDLF 145 (194)
T ss_pred ----HHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf ----77777898776434467898653789-75899999999987-----299749988564589888999999999999
Q ss_pred HHC-------CCCEEEEECCCC----------CCHHHHHHHHHHHH
Q ss_conf 862-------994899988878----------89999999999999
Q gi|254780648|r 298 TQC-------GQVPFEFSSITG----------HGIPQILECLHDKI 326 (335)
Q Consensus 298 ~~~-------~~~vi~ISA~tg----------~GI~eL~~~I~e~L 326 (335)
T Consensus 146 ~~~~~~~~~~~~pii~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~i 191 (194)
T cd01891 146 IELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHV 191 (194)
T ss_pred HHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 8639993335885787256553357788656465999999999658