HHsearch alignment for GI: 254780648 and conserved domain: cd01891

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.55  E-value=5.3e-14  Score=104.71  Aligned_cols=150  Identities=17%  Similarity=0.198  Sum_probs=93.8

Q ss_pred             ECEEEEECCCCCCCEEEEEE---CCCCC---HH----HHHH------HCCCEECCEEEEECCEEEEEECCCCCCCCCCCC
Q ss_conf             01124421677753035410---14540---12----1211------000000102663298689982264212473116
Q gi|254780648|r  160 ADIGIIGLPNAGKSTFLASV---TRAKP---KI----ADYP------FTTLYPNLGIVKEGYKEFILADIPGIIKNAHQG  223 (335)
Q Consensus       160 aDVglVG~PNaGKSTLln~l---s~ak~---kI----a~yp------FTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~  223 (335)
T Consensus         3 RNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH-------   75 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH-------   75 (194)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCC-------
T ss_conf             7899990689879999999999748763046521686147588887287633458999989988999989984-------


Q ss_pred             CCCHHHHHHH----HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH--HHHHHHHHHH
Q ss_conf             7751234433----333578875202222110134666789987776675059889999746589988--9999999999
Q gi|254780648|r  224 AGIGDRFLKH----TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD--TLARKKNELA  297 (335)
Q Consensus       224 ~glG~~FLrh----Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e--~~~~~~~~l~  297 (335)
T Consensus        76 ----~dF~~~~~~~~~~~D~ailVVdA~~G-v~~QT~~~l~~a~~-----~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~  145 (194)
T cd01891          76 ----ADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE-----LGLKPIVVINKIDRPDARPEEVVDEVFDLF  145 (194)
T ss_pred             ----HHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             ----77777898776434467898653789-75899999999987-----299749988564589888999999999999


Q ss_pred             HHC-------CCCEEEEECCCC----------CCHHHHHHHHHHHH
Q ss_conf             862-------994899988878----------89999999999999
Q gi|254780648|r  298 TQC-------GQVPFEFSSITG----------HGIPQILECLHDKI  326 (335)
Q Consensus       298 ~~~-------~~~vi~ISA~tg----------~GI~eL~~~I~e~L  326 (335)
T Consensus       146 ~~~~~~~~~~~~pii~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~i  191 (194)
T cd01891         146 IELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHV  191 (194)
T ss_pred             HHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             8639993335885787256553357788656465999999999658