HHsearch alignment for GI: 254780648 and conserved domain: cd01894
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=100.00 E-value=2.7e-34 Score=227.76 Aligned_cols=155 Identities=26% Similarity=0.334 Sum_probs=123.6
Q ss_pred EEEECCCCCCCEEEEEECCCCCH-HHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCC-CCCHHHHHHHHHHHHHH
Q ss_conf 24421677753035410145401-21211000000102663298689982264212473116-77512344333335788
Q gi|254780648|r 163 GIIGLPNAGKSTFLASVTRAKPK-IADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQG-AGIGDRFLKHTERTHVL 240 (335)
Q Consensus 163 glVG~PNaGKSTLln~ls~ak~k-Ia~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~-~glG~~FLrhIer~~vL 240 (335)
T Consensus 1 aivG~pN~GKSsL~N~l~~~~~~ivs~~~gtTr~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~i~~ad~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEE
T ss_conf 90489998899999999588753540799935667899999999889998578755566067899999999999865907
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 75202222110134666789987776675059889999746589988999999999986299489998887889999999
Q gi|254780648|r 241 LHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILE 320 (335)
Q Consensus 241 l~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~ 320 (335)
T Consensus 81 l~viDa~~~~~~~d~~-i~~~l~~-----~~kp~i~v~NK~D~~~~~~~~~~---~~~l~~~~~i~iSA~~g~Gid~L~~ 151 (157)
T cd01894 81 LFVVDGREGLTPADEE-IAKYLRK-----SKKPVILVVNKVDNIKEEDEAAE---FYSLGFGEPIPISAEHGRGIGDLLD 151 (157)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH-----HCCCEEEEEECCCCCCCHHHHHH---HHHCCCCCEEEEEEECCCCHHHHHH
T ss_conf 9999899999989999-9999998-----47980999978716586456999---9965999759999658949999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780648|r 321 CLHDKI 326 (335)
Q Consensus 321 ~I~e~L 326 (335)
T Consensus 152 ~I~~~L 157 (157)
T cd01894 152 AILELL 157 (157)
T ss_pred HHHHHC
T ss_conf 999659