HHsearch alignment for GI: 254780648 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.47 E-value=0.05 Score=32.11 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=29.5
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE
Q ss_conf 999997630112442167775303541014540121211000000102663298689
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~ 208 (335)
T Consensus 19 vsl~i~~Gei~gliG~nGaGKSTL~~~i~Gl~-----------~p~~G~I~~~G~~i 64 (236)
T cd03219 19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-----------RPTSGSVLFDGEDI 64 (236)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-----------CCCCEEEEECCEEC
T ss_conf 38998899899999899973999999996798-----------78831899999966