HHsearch alignment for GI: 254780648 and conserved domain: cd03220
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.20 E-value=0.019 Score=34.70 Aligned_cols=48 Identities=29% Similarity=0.306 Sum_probs=34.4
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE
Q ss_conf 68999997630112442167775303541014540121211000000102663298689
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~ 208 (335)
T Consensus 39 ~~isf~i~~GeivgilG~NGaGKSTLl~~i~Gl-----------~~p~~G~I~i~G~~~ 86 (224)
T cd03220 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI-----------YPPDSGTVTVRGRVS 86 (224)
T ss_pred CCEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCCEEEECCEEC
T ss_conf 670789838989999979998199999999758-----------777877699998984