HHsearch alignment for GI: 254780648 and conserved domain: cd03291

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.04  E-value=0.28  Score=27.60  Aligned_cols=47  Identities=28%  Similarity=0.331  Sum_probs=34.5

Q ss_pred             EEEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE
Q ss_conf             2689999976301124421677753035410145401212110000001026632986
Q gi|254780648|r  149 EKIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK  206 (335)
Q Consensus       149 ~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~  206 (335)
T Consensus        53 Lk~Isf~I~~Ge~vaIVG~sGSGKSTLl~lL~gl-----------~~p~~G~I~~~g~   99 (282)
T cd03291          53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE-----------LEPSEGKIKHSGR   99 (282)
T ss_pred             EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCCEEEECCE
T ss_conf             4164899849999999999998199999999578-----------7278658999999