HHsearch alignment for GI: 254780648 and conserved domain: cd03293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.0057 Score=37.83 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=65.7
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC-CC-----HHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCC--CCCC
Q ss_conf 9999976301124421677753035410145-40-----12121100000010266329868998226421247--3116
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA-KP-----KIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKN--AHQG 223 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a-k~-----kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIeg--A~~~ 223 (335)
T Consensus 23 vsl~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~ig~vf--------Q~-~~L~p~~tv~en 93 (220)
T cd03293 23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF--------QQ-DALLPWLTVLDN 93 (220)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCEEEEE--------CC-CCCCCCCCHHHH
T ss_conf 188987998999999999579999999975999887389999996788898879992--------48-853778879999
Q ss_pred CCCHHHHH-----HHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE----CCCCCCHHHHHH
Q ss_conf 77512344-----33333578875202222---1101346667899877766750598899997----465899889999
Q gi|254780648|r 224 AGIGDRFL-----KHTERTHVLLHIVSALE---ENVQAAYQCILDELSAYNSELRKKIEIVGLS----QIDTVDSDTLAR 291 (335)
Q Consensus 224 ~glG~~FL-----rhIer~~vLl~VVD~s~---~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlN----KiDl~~~e~~~~ 291 (335)
T Consensus 94 i~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-~LSGGqkQRvaiARaL~~~P~llllDEPts~LD~~~~~~i~~ 172 (220)
T cd03293 94 VALGLELQGVPKAEARERAEELLELVGLSGFENAYPH-QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQE 172 (220)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHH-HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 9889986599989999999999998789547618931-299999999999999866999999808876569999999999
Q ss_pred HHHHHHHHCCCCEEEEE
Q ss_conf 99999986299489998
Q gi|254780648|r 292 KKNELATQCGQVPFEFS 308 (335)
Q Consensus 292 ~~~~l~~~~~~~vi~IS 308 (335)
T Consensus 173 ~l~~l~~~~g~tii~vT 189 (220)
T cd03293 173 ELLDIWRETGKTVLLVT 189 (220)
T ss_pred HHHHHHHHCCCEEEEEC
T ss_conf 99999985199999988