HHsearch alignment for GI: 254780648 and conserved domain: cd03293

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24  E-value=0.0057  Score=37.83  Aligned_cols=147  Identities=18%  Similarity=0.243  Sum_probs=65.7

Q ss_pred             EEEEEEEEECEEEEECCCCCCCEEEEEECCC-CC-----HHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCC--CCCC
Q ss_conf             9999976301124421677753035410145-40-----12121100000010266329868998226421247--3116
Q gi|254780648|r  152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA-KP-----KIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKN--AHQG  223 (335)
Q Consensus       152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a-k~-----kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIeg--A~~~  223 (335)
T Consensus        23 vsl~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~ig~vf--------Q~-~~L~p~~tv~en   93 (220)
T cd03293          23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF--------QQ-DALLPWLTVLDN   93 (220)
T ss_pred             EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCEEEEE--------CC-CCCCCCCCHHHH
T ss_conf             188987998999999999579999999975999887389999996788898879992--------48-853778879999


Q ss_pred             CCCHHHHH-----HHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE----CCCCCCHHHHHH
Q ss_conf             77512344-----33333578875202222---1101346667899877766750598899997----465899889999
Q gi|254780648|r  224 AGIGDRFL-----KHTERTHVLLHIVSALE---ENVQAAYQCILDELSAYNSELRKKIEIVGLS----QIDTVDSDTLAR  291 (335)
Q Consensus       224 ~glG~~FL-----rhIer~~vLl~VVD~s~---~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlN----KiDl~~~e~~~~  291 (335)
T Consensus        94 i~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-~LSGGqkQRvaiARaL~~~P~llllDEPts~LD~~~~~~i~~  172 (220)
T cd03293          94 VALGLELQGVPKAEARERAEELLELVGLSGFENAYPH-QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQE  172 (220)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHH-HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf             9889986599989999999999998789547618931-299999999999999866999999808876569999999999


Q ss_pred             HHHHHHHHCCCCEEEEE
Q ss_conf             99999986299489998
Q gi|254780648|r  292 KKNELATQCGQVPFEFS  308 (335)
Q Consensus       292 ~~~~l~~~~~~~vi~IS  308 (335)
T Consensus       173 ~l~~l~~~~g~tii~vT  189 (220)
T cd03293         173 ELLDIWRETGKTVLLVT  189 (220)
T ss_pred             HHHHHHHHCCCEEEEEC
T ss_conf             99999985199999988