HHsearch alignment for GI: 254780648 and conserved domain: cd03294

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47  E-value=0.02  Score=34.54  Aligned_cols=147  Identities=18%  Similarity=0.201  Sum_probs=70.1

Q ss_pred             CCCCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE-----------------
Q ss_conf             775302689999976301124421677753035410145401212110000001026632986-----------------
Q gi|254780648|r  144 GILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK-----------------  206 (335)
Q Consensus       144 G~~G~~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~-----------------  206 (335)
T Consensus        35 G~~~aL~~vsl~i~~GE~~~ivG~SGsGKSTLLr~i~GL-----------~~p~~G~I~~~G~~i~~~~~~~l~~~r~~~  103 (269)
T cd03294          35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL-----------IEPTSGKVLIDGQDIAAMSRKELRELRRKK  103 (269)
T ss_pred             CCEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEECCCCCHHHHHHHHCCC
T ss_conf             992797774758889999999989984899999999759-----------999975999999999999989998852564


Q ss_pred             -EEEEECCCCCCCC--CCCCCCCHHHHHHHH------HHHHHHHHHCCCCCCCHHHHHHHHHHHHH-------HHHHHHC
Q ss_conf             -8998226421247--311677512344333------33578875202222110134666789987-------7766750
Q gi|254780648|r  207 -EFILADIPGIIKN--AHQGAGIGDRFLKHT------ERTHVLLHIVSALEENVQAAYQCILDELS-------AYNSELR  270 (335)
Q Consensus       207 -~~~i~D~PGlIeg--A~~~~glG~~FLrhI------er~~vLl~VVD~s~~d~~~~~~~I~~EL~-------~y~~~L~  270 (335)
T Consensus       104 igmVFQ~-~aL~P~ltV~eNV~~~L~~-~~~~~~e~~~rv~e~L~~vgL~~--~~~---~~P~qLSGGq~QRVaIARALa  176 (269)
T cd03294         104 ISMVFQS-FALLPHRTVLENVAFGLEV-QGVPRAEREERAAEALELVGLEG--WEH---KYPDELSGGMQQRVGLARALA  176 (269)
T ss_pred             EEEEEEC-CCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCHH--HHH---CCHHHHCHHHHHHHHHHHHHH
T ss_conf             6999615-7547678799998688885-28997899999999998679867--775---696784948888999999986


Q ss_pred             CCCEEEEEE----CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             598899997----46589988999999999986299489998
Q gi|254780648|r  271 KKIEIVGLS----QIDTVDSDTLARKKNELATQCGQVPFEFS  308 (335)
Q Consensus       271 ~Kp~IIVlN----KiDl~~~e~~~~~~~~l~~~~~~~vi~IS  308 (335)
T Consensus       177 ~~P~iLLlDEPtsaLD~~~~~~i~~~l~~l~~~~~~T~i~VT  218 (269)
T cd03294         177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFIT  218 (269)
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf             399899975875425999999999999999997499999999