HHsearch alignment for GI: 254780648 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.02 Score=34.54 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCCCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE-----------------
Q ss_conf 775302689999976301124421677753035410145401212110000001026632986-----------------
Q gi|254780648|r 144 GILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK----------------- 206 (335)
Q Consensus 144 G~~G~~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~----------------- 206 (335)
T Consensus 35 G~~~aL~~vsl~i~~GE~~~ivG~SGsGKSTLLr~i~GL-----------~~p~~G~I~~~G~~i~~~~~~~l~~~r~~~ 103 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL-----------IEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred CCEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEECCCCCHHHHHHHHCCC
T ss_conf 992797774758889999999989984899999999759-----------999975999999999999989998852564
Q ss_pred -EEEEECCCCCCCC--CCCCCCCHHHHHHHH------HHHHHHHHHCCCCCCCHHHHHHHHHHHHH-------HHHHHHC
Q ss_conf -8998226421247--311677512344333------33578875202222110134666789987-------7766750
Q gi|254780648|r 207 -EFILADIPGIIKN--AHQGAGIGDRFLKHT------ERTHVLLHIVSALEENVQAAYQCILDELS-------AYNSELR 270 (335)
Q Consensus 207 -~~~i~D~PGlIeg--A~~~~glG~~FLrhI------er~~vLl~VVD~s~~d~~~~~~~I~~EL~-------~y~~~L~ 270 (335)
T Consensus 104 igmVFQ~-~aL~P~ltV~eNV~~~L~~-~~~~~~e~~~rv~e~L~~vgL~~--~~~---~~P~qLSGGq~QRVaIARALa 176 (269)
T cd03294 104 ISMVFQS-FALLPHRTVLENVAFGLEV-QGVPRAEREERAAEALELVGLEG--WEH---KYPDELSGGMQQRVGLARALA 176 (269)
T ss_pred EEEEEEC-CCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCHH--HHH---CCHHHHCHHHHHHHHHHHHHH
T ss_conf 6999615-7547678799998688885-28997899999999998679867--775---696784948888999999986
Q ss_pred CCCEEEEEE----CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 598899997----46589988999999999986299489998
Q gi|254780648|r 271 KKIEIVGLS----QIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 271 ~Kp~IIVlN----KiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
T Consensus 177 ~~P~iLLlDEPtsaLD~~~~~~i~~~l~~l~~~~~~T~i~VT 218 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFIT 218 (269)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 399899975875425999999999999999997499999999