HHsearch alignment for GI: 254780648 and conserved domain: cd03298
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0019 Score=40.71 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=22.5
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
T Consensus 17 i~l~i~~Ge~~~ilGpSGsGKSTLl~li~Gl 47 (211)
T cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 7889889989999999995599999999769