HHsearch alignment for GI: 254780648 and conserved domain: cd03300

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60  E-value=0.0045  Score=38.46  Aligned_cols=144  Identities=16%  Similarity=0.158  Sum_probs=65.6

Q ss_pred             EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE------------EEECCCCCCCC
Q ss_conf             999997630112442167775303541014540121211000000102663298689------------98226421247
Q gi|254780648|r  152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF------------ILADIPGIIKN  219 (335)
Q Consensus       152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~------------~i~D~PGlIeg  219 (335)
T Consensus        19 vsl~v~~Ge~~~iiGpSGsGKSTllr~i~Gl-----------~~p~~G~I~~~g~~v~~~~~~~r~ig~VfQ~-~~Lfp~   86 (232)
T cd03300          19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF-----------ETPTSGEILLDGKDITNLPPHKRPVNTVFQN-YALFPH   86 (232)
T ss_pred             CEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEECCCCCHHHCCEEEEECC-CCCCCC
T ss_conf             1748879989999999998399999999779-----------9998539999999999999545775699148-854778


Q ss_pred             --CCCCCCCHHHHHH-----HHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCEEEEE----ECCCCCC
Q ss_conf             --3116775123443-----3333578875202222---110134666789987776675059889999----7465899
Q gi|254780648|r  220 --AHQGAGIGDRFLK-----HTERTHVLLHIVSALE---ENVQAAYQCILDELSAYNSELRKKIEIVGL----SQIDTVD  285 (335)
Q Consensus       220 --A~~~~glG~~FLr-----hIer~~vLl~VVD~s~---~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVl----NKiDl~~  285 (335)
T Consensus        87 ltV~~Nva~~l~~~~~~~~e~~~rv~e~l~~v~l~~~~~~~p~-~LSGGqkQRVaiARAl~~~P~llllDEP~s~LD~~~  165 (232)
T cd03300          87 LTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPS-QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKL  165 (232)
T ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHH-HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHH
T ss_conf             9199998779987699999999999999875897787619966-699899999999999865999999808876469999


Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             88999999999986299489998
Q gi|254780648|r  286 SDTLARKKNELATQCGQVPFEFS  308 (335)
Q Consensus       286 ~e~~~~~~~~l~~~~~~~vi~IS  308 (335)
T Consensus       166 ~~~i~~~l~~l~~~~~~T~i~VT  188 (232)
T cd03300         166 RKDMQLELKRLQKELGITFVFVT  188 (232)
T ss_pred             HHHHHHHHHHHHHHHCCEEEEEC
T ss_conf             99999999999998599999999