HHsearch alignment for GI: 254780648 and conserved domain: cd03300
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0045 Score=38.46 Aligned_cols=144 Identities=16% Similarity=0.158 Sum_probs=65.6
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE------------EEECCCCCCCC
Q ss_conf 999997630112442167775303541014540121211000000102663298689------------98226421247
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF------------ILADIPGIIKN 219 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~------------~i~D~PGlIeg 219 (335)
T Consensus 19 vsl~v~~Ge~~~iiGpSGsGKSTllr~i~Gl-----------~~p~~G~I~~~g~~v~~~~~~~r~ig~VfQ~-~~Lfp~ 86 (232)
T cd03300 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF-----------ETPTSGEILLDGKDITNLPPHKRPVNTVFQN-YALFPH 86 (232)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEECCCCCHHHCCEEEEECC-CCCCCC
T ss_conf 1748879989999999998399999999779-----------9998539999999999999545775699148-854778
Q ss_pred --CCCCCCCHHHHHH-----HHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCEEEEE----ECCCCCC
Q ss_conf --3116775123443-----3333578875202222---110134666789987776675059889999----7465899
Q gi|254780648|r 220 --AHQGAGIGDRFLK-----HTERTHVLLHIVSALE---ENVQAAYQCILDELSAYNSELRKKIEIVGL----SQIDTVD 285 (335)
Q Consensus 220 --A~~~~glG~~FLr-----hIer~~vLl~VVD~s~---~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVl----NKiDl~~ 285 (335)
T Consensus 87 ltV~~Nva~~l~~~~~~~~e~~~rv~e~l~~v~l~~~~~~~p~-~LSGGqkQRVaiARAl~~~P~llllDEP~s~LD~~~ 165 (232)
T cd03300 87 LTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPS-QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKL 165 (232)
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHH-HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHH
T ss_conf 9199998779987699999999999999875897787619966-699899999999999865999999808876469999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88999999999986299489998
Q gi|254780648|r 286 SDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 286 ~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
T Consensus 166 ~~~i~~~l~~l~~~~~~T~i~VT 188 (232)
T cd03300 166 RKDMQLELKRLQKELGITFVFVT 188 (232)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 99999999999998599999999