HHsearch alignment for GI: 254780648 and conserved domain: cd04101

>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.62  E-value=1.2e-15  Score=114.75  Aligned_cols=154  Identities=14%  Similarity=0.148  Sum_probs=106.8

Q ss_pred             EEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECC--EEEEE-CC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             1244216777530354101454-012121100000010--26632-98--689982264212473116775123443333
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNL--GIVKE-GY--KEFILADIPGIIKNAHQGAGIGDRFLKHTE  235 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~l--Gvv~~-~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIe  235 (335)
T Consensus         3 ivllGd~gVGKTsli~r~~~~~~~f~~~y~-~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~e----~~~~l~---~~~~~   74 (164)
T cd04101           3 CAVVGDPAVGKTAFVQMFHSNGAVFPKNYL-MTTGCDFVVKEVPVDTDNTVELFIFDSAGQE----LYSDMV---SNYWE   74 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCCC-CCCCEEEEEEEEEECCCCEEEEEEEECCCCC----CHHHHH---HHHHH
T ss_conf             999995995889999999978886688888-8645788999999789979999999799984----006789---99976


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             357887520222211013466678998777667505988999974658998899-9999999986299489998887889
Q gi|254780648|r  236 RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHG  314 (335)
Q Consensus       236 r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~G  314 (335)
T Consensus        75 ~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~---~~~p~ilVgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~g~n  151 (164)
T cd04101          75 SPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVG  151 (164)
T ss_pred             HCCEEEEEEECCCHHHHHHHHHHHHHHHHHC---CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf             4268999970774668999999999999766---8986899987224452455699999999998899899986688909


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q gi|254780648|r  315 IPQILECLHDKI  326 (335)
Q Consensus       315 I~eL~~~I~e~L  326 (335)
T Consensus       152 V~e~F~~lar~~  163 (164)
T cd04101         152 YEEPFESLARAF  163 (164)
T ss_pred             HHHHHHHHHHHH
T ss_conf             899999999986