HHsearch alignment for GI: 254780648 and conserved domain: cd04101
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.62 E-value=1.2e-15 Score=114.75 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=106.8
Q ss_pred EEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECC--EEEEE-CC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 1244216777530354101454-012121100000010--26632-98--689982264212473116775123443333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNL--GIVKE-GY--KEFILADIPGIIKNAHQGAGIGDRFLKHTE 235 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~l--Gvv~~-~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIe 235 (335)
T Consensus 3 ivllGd~gVGKTsli~r~~~~~~~f~~~y~-~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~e----~~~~l~---~~~~~ 74 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFPKNYL-MTTGCDFVVKEVPVDTDNTVELFIFDSAGQE----LYSDMV---SNYWE 74 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCC-CCCCEEEEEEEEEECCCCEEEEEEEECCCCC----CHHHHH---HHHHH
T ss_conf 999995995889999999978886688888-8645788999999789979999999799984----006789---99976
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 357887520222211013466678998777667505988999974658998899-9999999986299489998887889
Q gi|254780648|r 236 RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHG 314 (335)
Q Consensus 236 r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~G 314 (335)
T Consensus 75 ~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~---~~~p~ilVgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~g~n 151 (164)
T cd04101 75 SPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVG 151 (164)
T ss_pred HCCEEEEEEECCCHHHHHHHHHHHHHHHHHC---CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 4268999970774668999999999999766---8986899987224452455699999999998899899986688909
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780648|r 315 IPQILECLHDKI 326 (335)
Q Consensus 315 I~eL~~~I~e~L 326 (335)
T Consensus 152 V~e~F~~lar~~ 163 (164)
T cd04101 152 YEEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999986