HHsearch alignment for GI: 254780648 and conserved domain: cd04102
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.69 E-value=1.3e-08 Score=71.95 Aligned_cols=155 Identities=12% Similarity=0.100 Sum_probs=93.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE--EEE-----CC--EEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 124421677753035410145401212110000001026--632-----98--689982264212473116775123443
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI--VKE-----GY--KEFILADIPGIIKNAHQGAGIGDRFLK 232 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv--v~~-----~~--~~~~i~D~PGlIegA~~~~glG~~FLr 232 (335)
T Consensus 3 IlllGDsgVGKTSL~~~~~~~~f-~~~~~-~TiG~~v~~k~~~~~~~~~~~k~~~l~lWDtaGqer---------y~sl~ 71 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICKNQV-LGRPS-WTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES---------VKSTR 71 (202)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCCC-CCEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCHH---------HHHHH
T ss_conf 99999999899999999983988-88888-850367899999933787678389999998998775---------77678
Q ss_pred --HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH--------------HHHH---CCCCEEEEEECCCCCCHHHHH---
Q ss_conf --333357887520222211013466678998777--------------6675---059889999746589988999---
Q gi|254780648|r 233 --HTERTHVLLHIVSALEENVQAAYQCILDELSAY--------------NSEL---RKKIEIVGLSQIDTVDSDTLA--- 290 (335)
Q Consensus 233 --hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y--------------~~~L---~~Kp~IIVlNKiDl~~~e~~~--- 290 (335)
T Consensus 72 ~~yYr~a~gvILVyDvTnr~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~~r~~~~~~ 151 (202)
T cd04102 72 AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNL 151 (202)
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCCCCCCH
T ss_conf 99758898999999894989998699999999753676665455666555333467897589997606524343555423
Q ss_pred --HH---------HHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf --99---------99999862-994899988878899999999999998
Q gi|254780648|r 291 --RK---------KNELATQC-GQVPFEFSSITGHGIPQILECLHDKIF 327 (335)
Q Consensus 291 --~~---------~~~l~~~~-~~~vi~ISA~tg~GI~eL~~~I~e~L~ 327 (335)
T Consensus 152 ~~~~~~~ia~q~~~eei~~~c~~~~~~~~~~~~~~kl~~ff~~vie~~y 200 (202)
T cd04102 152 VLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEKRY 200 (202)
T ss_pred HHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 5553025777516678887456844003467551689999999988882