HHsearch alignment for GI: 254780648 and conserved domain: cd04108

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.65  E-value=2.2e-16  Score=119.18  Aligned_cols=157  Identities=11%  Similarity=0.105  Sum_probs=109.1

Q ss_pred             ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf             0112442167775303541014540121211000000102------663298--68998226421247311677512344
Q gi|254780648|r  160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFL  231 (335)
Q Consensus       160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FL  231 (335)
T Consensus         1 aKivlvGd~~VGKTsli~r~~~~~f-~~~y-----~~Tig~d~~~k~~~v~~~~~~l~iwDtaGqe----~f~~l~~~--   68 (170)
T cd04108           1 SKVIVVGDLSVGKTCLINRFCKDVF-DKNY-----KATIGVDFEMERFEILGVPFSLQLWDTAGQE----RFKCIAST--   68 (170)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCC----CCCCCHHH--
T ss_conf             9899999899898999999963988-9972-----5634505899999999999999999899997----46644377--


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH---HHHHHHHHHHCCCCEEEEE
Q ss_conf             3333357887520222211013466678998777667505988999974658998899---9999999986299489998
Q gi|254780648|r  232 KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL---ARKKNELATQCGQVPFEFS  308 (335)
Q Consensus       232 rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~---~~~~~~l~~~~~~~vi~IS  308 (335)
T Consensus        69 -y~r~a~~~ilvyDvt~~~Sf~~~~~w~~~~~~~~~-~~~~~i~LvgNK~DL~~~~~~~~~~~~~~~~a~~~~~~~~E~S  146 (170)
T cd04108          69 -YYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVS  146 (170)
T ss_pred             -HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCEEEEEC
T ss_conf             -73278758999978987899999999999998508-9998299999841379875576448999999987798799985


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             8878899999999999998545
Q gi|254780648|r  309 SITGHGIPQILECLHDKIFSIR  330 (335)
Q Consensus       309 A~tg~GI~eL~~~I~e~L~~~r  330 (335)
T Consensus       147 Ak~g~nV~e~F~~ia~~~~e~~  168 (170)
T cd04108         147 ALSGENVREFFFRVAALTFELG  168 (170)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHC
T ss_conf             5788187999999999998644