HHsearch alignment for GI: 254780648 and conserved domain: cd04108
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.65 E-value=2.2e-16 Score=119.18 Aligned_cols=157 Identities=11% Similarity=0.105 Sum_probs=109.1
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 0112442167775303541014540121211000000102------663298--68998226421247311677512344
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFL 231 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FL 231 (335)
T Consensus 1 aKivlvGd~~VGKTsli~r~~~~~f-~~~y-----~~Tig~d~~~k~~~v~~~~~~l~iwDtaGqe----~f~~l~~~-- 68 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVF-DKNY-----KATIGVDFEMERFEILGVPFSLQLWDTAGQE----RFKCIAST-- 68 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCC----CCCCCHHH--
T ss_conf 9899999899898999999963988-9972-----5634505899999999999999999899997----46644377--
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH---HHHHHHHHHHCCCCEEEEE
Q ss_conf 3333357887520222211013466678998777667505988999974658998899---9999999986299489998
Q gi|254780648|r 232 KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL---ARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 232 rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~---~~~~~~l~~~~~~~vi~IS 308 (335)
T Consensus 69 -y~r~a~~~ilvyDvt~~~Sf~~~~~w~~~~~~~~~-~~~~~i~LvgNK~DL~~~~~~~~~~~~~~~~a~~~~~~~~E~S 146 (170)
T cd04108 69 -YYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVS 146 (170)
T ss_pred -HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCEEEEEC
T ss_conf -73278758999978987899999999999998508-9998299999841379875576448999999987798799985
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8878899999999999998545
Q gi|254780648|r 309 SITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 309 A~tg~GI~eL~~~I~e~L~~~r 330 (335)
T Consensus 147 Ak~g~nV~e~F~~ia~~~~e~~ 168 (170)
T cd04108 147 ALSGENVREFFFRVAALTFELG 168 (170)
T ss_pred CCCCCCHHHHHHHHHHHHHHHC
T ss_conf 5788187999999999998644