HHsearch alignment for GI: 254780648 and conserved domain: cd04118

>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.70  E-value=4.2e-17  Score=123.49  Aligned_cols=159  Identities=13%  Similarity=0.154  Sum_probs=113.2

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             1244216777530354101454012121100000010--2663298--68998226421247311677512344333335
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT  237 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~  237 (335)
T Consensus         3 ivlvGd~~VGKTsLi~r~~~~~f~~~~y~-~tig~~~~~k~i~v~~~~v~l~iwDtaG~e~~----~~l~~---~y~~~a   74 (193)
T cd04118           3 VVMLGKESVGKTSLVERYVHHRFLVGPYQ-NTIGAAFVAKRMVVGERVVTLGIWDTAGSERY----EAMSR---IYYRGA   74 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCC-CCCEEEEEEEEEEECCEEEEEEEEECCCCHHH----HHHHH---HHHCCC
T ss_conf             99999699879999999985979989978-76305889999999999999999919997312----35579---883477


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH-----HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             78875202222110134666789987776675059889999746589988-----9999999999862994899988878
Q gi|254780648|r  238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD-----TLARKKNELATQCGQVPFEFSSITG  312 (335)
Q Consensus       238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e-----~~~~~~~~l~~~~~~~vi~ISA~tg  312 (335)
T Consensus        75 ~~~ilvydit~~~Sf~~i~~W~~~i~~~~~---~~~iilVGnK~DL~~~~~~~r~V~~~e~~~~a~~~~~~~~E~SAktg  151 (193)
T cd04118          75 KAAIVCYDLTDSSSFERAKFWVKELQNLEE---HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTG  151 (193)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             445788306987999989999999997489---99979997746632201666446899999999980996999838989


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q ss_conf             8999999999999985452
Q gi|254780648|r  313 HGIPQILECLHDKIFSIRG  331 (335)
Q Consensus       313 ~GI~eL~~~I~e~L~~~r~  331 (335)
T Consensus       152 ~nV~e~F~~la~~i~~~~~  170 (193)
T cd04118         152 QNVDELFQKVAEDFVSRAN  170 (193)
T ss_pred             CCHHHHHHHHHHHHHHHHH
T ss_conf             3989999999999997652