HHsearch alignment for GI: 254780648 and conserved domain: cd04122
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.63 E-value=3.2e-16 Score=118.15 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=108.8
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC--CEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001--02663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN--LGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~--lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
T Consensus 5 ivlvGd~~VGKTsli~r~~~~~f-~~~~~~T-ig~~~~~k~i~~~~~~~~l~iwDtaG~-e---~~~~~~~~---~~~~a 75 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEKKF-MADCPHT-IGVEFGTRIIEVNGQKIKLQIWDTAGQ-E---RFRAVTRS---YYRGA 75 (166)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCCCCC-CCEEEEEEEEEECCEEEEEEEEECCCC-C---CCCCCCHH---HEECC
T ss_conf 99999999579999999912988-9999997-446889999999999999999989998-5---44425211---14315
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 7887520222211013466678998777667505988999974658998899-999999998629948999888788999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
T Consensus 76 ~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~--~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~g~nV~ 153 (166)
T cd04122 76 AGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVE 153 (166)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHCC--CCCEEEECCCCCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 465997258747679999999999998569--997587034015744438999999999999869989998658780889
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999985
Q gi|254780648|r 317 QILECLHDKIFS 328 (335)
Q Consensus 317 eL~~~I~e~L~~ 328 (335)
T Consensus 154 e~F~~l~~~i~~ 165 (166)
T cd04122 154 DAFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999974