HHsearch alignment for GI: 254780648 and conserved domain: cd04130
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.46 E-value=2.4e-13 Score=100.75 Aligned_cols=150 Identities=19% Similarity=0.152 Sum_probs=98.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010-2663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
T Consensus 3 vvlvGd~~VGKTsli~r~~~~~F-~~~y~pT-~~~~~~~~i~~~~~~v~l~iwDtaG~e~----~~~l~~~---~~~~a~ 73 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYTTNGY-PTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDE----FDKLRPL---CYPDTD 73 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCCC-EEEEEEEEEEECCEEEEEEEEECCCCCC----CCHHHHH---HHCCCC
T ss_conf 99999899788999999961999-9985783-5899999999999999999998998734----4345676---613787
Q ss_pred HHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-------------HHHHHHHHHHHCC-CC
Q ss_conf 887520222211013466-67899877766750598899997465899889-------------9999999998629-94
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDT-------------LARKKNELATQCG-QV 303 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-------------~~~~~~~l~~~~~-~~ 303 (335)
T Consensus 74 ~~ilvydv~~~~Sf~~l~~~w~~~i~~~~~---~~piilvGnK~DL~~~~~~~~~~~~~~~r~Vs~~e~~~~a~~~~~~~ 150 (173)
T cd04130 74 VFLLCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE 150 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCC---CCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 899999659878899999999999996098---99889998870110013355444332575578999999999849968
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998887889999999999
Q gi|254780648|r 304 PFEFSSITGHGIPQILECLH 323 (335)
Q Consensus 304 vi~ISA~tg~GI~eL~~~I~ 323 (335)
T Consensus 151 y~EtSAkt~~nV~e~Fe~~i 170 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 99968688969799999998