HHsearch alignment for GI: 254780648 and conserved domain: cd04133

>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.55  E-value=2.3e-14  Score=106.91  Aligned_cols=155  Identities=19%  Similarity=0.187  Sum_probs=104.4

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             1244216777530354101454012121100000010-2663298--689982264212473116775123443333357
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH  238 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~  238 (335)
T Consensus         4 ivllGd~~VGKTsL~~rf~~~~F-~~~~~-pTi~~~~~~~i~v~~~~~~l~iwDTaG~e~~----~~l~~~---~y~~a~   74 (176)
T cd04133           4 CVTVGDGAVGKTCMLICYTSNKF-PTDYI-PTVFDNFSANVSVDGNTVNLGLWDTAGQEDY----NRLRPL---SYRGAD   74 (176)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCEEEEEEEEEEECCEEEEEEEEECCCCCCC----CHHHHH---HHCCCC
T ss_conf             99989999779999999965989-99867-8535899999999998999999979997654----246898---726787


Q ss_pred             HHHHHCCCCCCCHHHH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-----------HHHHHHHHHHHCCCC-EE
Q ss_conf             8875202222110134-6667899877766750598899997465899889-----------999999999862994-89
Q gi|254780648|r  239 VLLHIVSALEENVQAA-YQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-----------LARKKNELATQCGQV-PF  305 (335)
Q Consensus       239 vLl~VVD~s~~d~~~~-~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-----------~~~~~~~l~~~~~~~-vi  305 (335)
T Consensus        75 ~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~---~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~~~~y~  151 (176)
T cd04133          75 VFVLAFSLISRASYENVLKKWVPELRHYAP---NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYI  151 (176)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             579999789878999999999999998684---99889999863202122233330246777799999999977997899


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             99888788999999999999985
Q gi|254780648|r  306 EFSSITGHGIPQILECLHDKIFS  328 (335)
Q Consensus       306 ~ISA~tg~GI~eL~~~I~e~L~~  328 (335)
T Consensus       152 EtSAk~~~nV~e~F~~~~~~il~  174 (176)
T cd04133         152 ECSSKTQQNVKAVFDAAIKVVLQ  174 (176)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHC
T ss_conf             94789880989999999999808