HHsearch alignment for GI: 254780648 and conserved domain: cd04133
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.55 E-value=2.3e-14 Score=106.91 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=104.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010-2663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
T Consensus 4 ivllGd~~VGKTsL~~rf~~~~F-~~~~~-pTi~~~~~~~i~v~~~~~~l~iwDTaG~e~~----~~l~~~---~y~~a~ 74 (176)
T cd04133 4 CVTVGDGAVGKTCMLICYTSNKF-PTDYI-PTVFDNFSANVSVDGNTVNLGLWDTAGQEDY----NRLRPL---SYRGAD 74 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCEEEEEEEEEEECCEEEEEEEEECCCCCCC----CHHHHH---HHCCCC
T ss_conf 99989999779999999965989-99867-8535899999999998999999979997654----246898---726787
Q ss_pred HHHHHCCCCCCCHHHH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-----------HHHHHHHHHHHCCCC-EE
Q ss_conf 8875202222110134-6667899877766750598899997465899889-----------999999999862994-89
Q gi|254780648|r 239 VLLHIVSALEENVQAA-YQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-----------LARKKNELATQCGQV-PF 305 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~-~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-----------~~~~~~~l~~~~~~~-vi 305 (335)
T Consensus 75 ~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~---~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~~~~y~ 151 (176)
T cd04133 75 VFVLAFSLISRASYENVLKKWVPELRHYAP---NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYI 151 (176)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 579999789878999999999999998684---99889999863202122233330246777799999999977997899
Q ss_pred EEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 99888788999999999999985
Q gi|254780648|r 306 EFSSITGHGIPQILECLHDKIFS 328 (335)
Q Consensus 306 ~ISA~tg~GI~eL~~~I~e~L~~ 328 (335)
T Consensus 152 EtSAk~~~nV~e~F~~~~~~il~ 174 (176)
T cd04133 152 ECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred EECCCCCCCHHHHHHHHHHHHHC
T ss_conf 94789880989999999999808