HHsearch alignment for GI: 254780648 and conserved domain: cd04134

>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.53  E-value=3.2e-14  Score=106.06  Aligned_cols=159  Identities=15%  Similarity=0.100  Sum_probs=105.6

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-CEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             124421677753035410145401212110000001-026632986--89982264212473116775123443333357
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-LGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKHTERTH  238 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrhIer~~  238 (335)
T Consensus         3 ivlvGd~~VGKTsli~r~~~~~F-~~~y~-~Ti~~~~~~~~~v~~~~v~l~iwDTaGqe~----~~~i~~~---~y~~a~   73 (189)
T cd04134           3 VVVLGDGACGKTSLLNVFTRGYF-PQVYE-PTVFENYVHDIFVDGLHIELSLWDTAGQEE----FDRLRSL---SYADTD   73 (189)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCC-CCCCC-CCEEEEEEEEEEECCEEEEEEEEECCCCCC----CCHHHHH---HHCCCC
T ss_conf             99999799769999999970999-99868-837899999999999999999984778500----0035567---643786


Q ss_pred             HHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH-------------HHHHHHHCC-CC
Q ss_conf             887520222211013466-678998777667505988999974658998899999-------------999998629-94
Q gi|254780648|r  239 VLLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARK-------------KNELATQCG-QV  303 (335)
Q Consensus       239 vLl~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~-------------~~~l~~~~~-~~  303 (335)
T Consensus        74 ~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~---~~piiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~~Ak~~~~~~  150 (189)
T cd04134          74 VIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALR  150 (189)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCE
T ss_conf             459999789878999999999999997497---99789999880046532356777663046658999999999829978


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             89998887889999999999999854523
Q gi|254780648|r  304 PFEFSSITGHGIPQILECLHDKIFSIRGE  332 (335)
Q Consensus       304 vi~ISA~tg~GI~eL~~~I~e~L~~~r~e  332 (335)
T Consensus       151 y~EtSAkt~~nV~e~F~~lar~~l~~~~~  179 (189)
T cd04134         151 YLECSAKLNRGVNEAFTEAARVALNVRPP  179 (189)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99968067949899999999999735898