HHsearch alignment for GI: 254780648 and conserved domain: cd04134
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.53 E-value=3.2e-14 Score=106.06 Aligned_cols=159 Identities=15% Similarity=0.100 Sum_probs=105.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-CEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001-026632986--89982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-LGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~F-~~~y~-~Ti~~~~~~~~~v~~~~v~l~iwDTaGqe~----~~~i~~~---~y~~a~ 73 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFTRGYF-PQVYE-PTVFENYVHDIFVDGLHIELSLWDTAGQEE----FDRLRSL---SYADTD 73 (189)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCCC-CCEEEEEEEEEEECCEEEEEEEEECCCCCC----CCHHHHH---HHCCCC
T ss_conf 99999799769999999970999-99868-837899999999999999999984778500----0035567---643786
Q ss_pred HHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH-------------HHHHHHHCC-CC
Q ss_conf 887520222211013466-678998777667505988999974658998899999-------------999998629-94
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARK-------------KNELATQCG-QV 303 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~-------------~~~l~~~~~-~~ 303 (335)
T Consensus 74 ~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~---~~piiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~~Ak~~~~~~ 150 (189)
T cd04134 74 VIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALR 150 (189)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCE
T ss_conf 459999789878999999999999997497---99789999880046532356777663046658999999999829978
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89998887889999999999999854523
Q gi|254780648|r 304 PFEFSSITGHGIPQILECLHDKIFSIRGE 332 (335)
Q Consensus 304 vi~ISA~tg~GI~eL~~~I~e~L~~~r~e 332 (335)
T Consensus 151 y~EtSAkt~~nV~e~F~~lar~~l~~~~~ 179 (189)
T cd04134 151 YLECSAKLNRGVNEAFTEAARVALNVRPP 179 (189)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99968067949899999999999735898