HHsearch alignment for GI: 254780648 and conserved domain: cd04136

>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.59  E-value=3.2e-15  Score=112.12  Aligned_cols=156  Identities=13%  Similarity=0.121  Sum_probs=105.9

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             124421677753035410145401212110000001026632986--899822642124731167751234433333578
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKHTERTHV  239 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v  239 (335)
T Consensus         4 ivllGd~~VGKTsli~r~~~~~f-~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~----~~~~~~~---y~~~a~~   75 (163)
T cd04136           4 VVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ----FTAMRDL---YIKNGQG   75 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCHH----HHHHHHH---HHCCCCE
T ss_conf             99989999889999999971959-88669954206999999999999998645765445----5567898---8346876


Q ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf             87520222211013466678998777667505988999974658998899-99999999862994899988878899999
Q gi|254780648|r  240 LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQI  318 (335)
Q Consensus       240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~eL  318 (335)
T Consensus        76 ~ilvydvt~~~Sf~~l~~~~~~i~~~~-~~~~~piilVGnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAk~~~nV~e~  154 (163)
T cd04136          76 FVLVYSITSQSSFNDLQDLREQILRVK-DTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEV  154 (163)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHC-CCCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf             999704898899999999999999861-8888867876235472640789999999999984998999744878058999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780648|r  319 LECLHDKI  326 (335)
Q Consensus       319 ~~~I~e~L  326 (335)
T Consensus       155 F~~l~~~i  162 (163)
T cd04136         155 FADLVRQI  162 (163)
T ss_pred             HHHHHHHH
T ss_conf             99999963