HHsearch alignment for GI: 254780648 and conserved domain: cd04136
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.59 E-value=3.2e-15 Score=112.12 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=105.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001026632986--899822642124731167751234433333578
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
T Consensus 4 ivllGd~~VGKTsli~r~~~~~f-~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~----~~~~~~~---y~~~a~~ 75 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ----FTAMRDL---YIKNGQG 75 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCHH----HHHHHHH---HHCCCCE
T ss_conf 99989999889999999971959-88669954206999999999999998645765445----5567898---8346876
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 87520222211013466678998777667505988999974658998899-99999999862994899988878899999
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
T Consensus 76 ~ilvydvt~~~Sf~~l~~~~~~i~~~~-~~~~~piilVGnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAk~~~nV~e~ 154 (163)
T cd04136 76 FVLVYSITSQSSFNDLQDLREQILRVK-DTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEV 154 (163)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHC-CCCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 999704898899999999999999861-8888867876235472640789999999999984998999744878058999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780648|r 319 LECLHDKI 326 (335)
Q Consensus 319 ~~~I~e~L 326 (335)
T Consensus 155 F~~l~~~i 162 (163)
T cd04136 155 FADLVRQI 162 (163)
T ss_pred HHHHHHHH
T ss_conf 99999963