HHsearch alignment for GI: 254780648 and conserved domain: cd04141

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.55  E-value=9.9e-15  Score=109.13  Aligned_cols=159  Identities=13%  Similarity=0.038  Sum_probs=106.7

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             1244216777530354101454012121100000010-2663298--689982264212473116775123443333357
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH  238 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~  238 (335)
T Consensus         5 iv~lGd~~VGKTsli~r~~~~~f-~~~~~-pTi~~~~~~~i~i~~~~~~l~iwDtaGqe~----~~~l~~~---~~r~a~   75 (172)
T cd04141           5 IVMLGAGGVGKSAVTMQFISHSF-PDYHD-PTIEDAYKQQARIDNEPALLDILDTAGQAE----FTAMRDQ---YMRCGE   75 (172)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCCCEEEEEEECCEEEEEEEEECCCCCC----CCCCHHH---HHCCCC
T ss_conf             99999999779999999970989-98758-842220369999999999999997888513----5745155---642786


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf             887520222211013466678998777667505988999974658998899-9999999986299489998887889999
Q gi|254780648|r  239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQ  317 (335)
Q Consensus       239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~e  317 (335)
T Consensus        76 ~~ilvydvt~~~Sf~~~~~w~~~i~~~~~-~~~~piilvGNK~DL~~~r~Vs~~e~~~~a~~~~~~f~EtSAk~~~nV~e  154 (172)
T cd04141          76 GFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDD  154 (172)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf             56887316888899999999999999728-89986899850456676188899999999998599799974788828899


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999998545
Q gi|254780648|r  318 ILECLHDKIFSIR  330 (335)
Q Consensus       318 L~~~I~e~L~~~r  330 (335)
T Consensus       155 ~F~~l~~~i~~k~  167 (172)
T cd04141         155 AFHGLVREIRRKE  167 (172)
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999998635