HHsearch alignment for GI: 254780648 and conserved domain: cd04141
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.55 E-value=9.9e-15 Score=109.13 Aligned_cols=159 Identities=13% Similarity=0.038 Sum_probs=106.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010-2663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
T Consensus 5 iv~lGd~~VGKTsli~r~~~~~f-~~~~~-pTi~~~~~~~i~i~~~~~~l~iwDtaGqe~----~~~l~~~---~~r~a~ 75 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQFISHSF-PDYHD-PTIEDAYKQQARIDNEPALLDILDTAGQAE----FTAMRDQ---YMRCGE 75 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCCCEEEEEEECCEEEEEEEEECCCCCC----CCCCHHH---HHCCCC
T ss_conf 99999999779999999970989-98758-842220369999999999999997888513----5745155---642786
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 887520222211013466678998777667505988999974658998899-9999999986299489998887889999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
T Consensus 76 ~~ilvydvt~~~Sf~~~~~w~~~i~~~~~-~~~~piilvGNK~DL~~~r~Vs~~e~~~~a~~~~~~f~EtSAk~~~nV~e 154 (172)
T cd04141 76 GFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDD 154 (172)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 56887316888899999999999999728-89986899850456676188899999999998599799974788828899
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999998545
Q gi|254780648|r 318 ILECLHDKIFSIR 330 (335)
Q Consensus 318 L~~~I~e~L~~~r 330 (335)
T Consensus 155 ~F~~l~~~i~~k~ 167 (172)
T cd04141 155 AFHGLVREIRRKE 167 (172)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999998635