HHsearch alignment for GI: 254780648 and conserved domain: cd04153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.78 E-value=5.8e-19 Score=134.80 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=100.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298689982264212473116775123443333357887
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
T Consensus 18 ililG~~~sGKTsil~~l~~~~--~~~~-~pT~G~~~~~i~~~~~~~~iwD~~G~e----~~~~~~~~---y~~~a~~ii 87 (174)
T cd04153 18 VIIVGLDNAGKTTILYQFLLGE--VVHT-SPTIGSNVEEIVYKNIRFLMWDIGGQE----SLRSSWNT---YYTNTDAVI 87 (174)
T ss_pred EEEECCCCCCHHHHHHHHHCCC--CCCC-CCCCCCCEEEEEECCEEEEEEECCCCC----CCCCHHHH---HHCCCCEEE
T ss_conf 9999899998899999997399--2771-672360469999788899999899986----56622677---705775379
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH----HHHCCCCEEEEECCCCCCHHH
Q ss_conf 5202222110134666789987776675059889999746589988999999999----986299489998887889999
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNEL----ATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l----~~~~~~~vi~ISA~tg~GI~e 317 (335)
T Consensus 88 ~VvD~sd~~~~~~~~~~l~~~l~-~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG~Gv~e 166 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLA-HEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHH-CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 99976788899999999999972-61016982899995555655789999999974777635980999966858919899
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780648|r 318 ILECLHD 324 (335)
Q Consensus 318 L~~~I~e 324 (335)
T Consensus 167 ~f~wLa~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHHC
T ss_conf 9999866