HHsearch alignment for GI: 254780648 and conserved domain: cd04153

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.78  E-value=5.8e-19  Score=134.80  Aligned_cols=152  Identities=20%  Similarity=0.213  Sum_probs=100.4

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             12442167775303541014540121211000000102663298689982264212473116775123443333357887
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL  241 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl  241 (335)
T Consensus        18 ililG~~~sGKTsil~~l~~~~--~~~~-~pT~G~~~~~i~~~~~~~~iwD~~G~e----~~~~~~~~---y~~~a~~ii   87 (174)
T cd04153          18 VIIVGLDNAGKTTILYQFLLGE--VVHT-SPTIGSNVEEIVYKNIRFLMWDIGGQE----SLRSSWNT---YYTNTDAVI   87 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHCCC--CCCC-CCCCCCCEEEEEECCEEEEEEECCCCC----CCCCHHHH---HHCCCCEEE
T ss_conf             9999899998899999997399--2771-672360469999788899999899986----56622677---705775379


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH----HHHCCCCEEEEECCCCCCHHH
Q ss_conf             5202222110134666789987776675059889999746589988999999999----986299489998887889999
Q gi|254780648|r  242 HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNEL----ATQCGQVPFEFSSITGHGIPQ  317 (335)
Q Consensus       242 ~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l----~~~~~~~vi~ISA~tg~GI~e  317 (335)
T Consensus        88 ~VvD~sd~~~~~~~~~~l~~~l~-~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG~Gv~e  166 (174)
T cd04153          88 LVIDSTDRERLPLTKEELYKMLA-HEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHH-CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf             99976788899999999999972-61016982899995555655789999999974777635980999966858919899


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780648|r  318 ILECLHD  324 (335)
Q Consensus       318 L~~~I~e  324 (335)
T Consensus       167 ~f~wLa~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHHC
T ss_conf             9999866