HHsearch alignment for GI: 254780648 and conserved domain: cd04157

>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.82  E-value=1.9e-20  Score=143.84  Aligned_cols=151  Identities=17%  Similarity=0.270  Sum_probs=102.5

Q ss_pred             CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             112442167775303541014540121211000000102----6632986899822642124731167751234433333
Q gi|254780648|r  161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTER  236 (335)
Q Consensus       161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer  236 (335)
T Consensus         1 ~Il~lGl~~sGKTtil~~l~~~~~~~-----~~~~pT~G~~~~~~~~~~~~~~iwD~~G~----~~~r~lw~---~y~~~   68 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQS-----QIIVPTVGFNVESFEKGNLSFTAFDMSGQ----GKYRGLWE---HYYKN   68 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHHCCCCCC-----CCCCCCCCEEEEEEEECCEEEEEEECCCC----CCCCHHHH---HHHCC
T ss_conf             99999999998899999997289875-----64168507578999839988999985887----44205589---87056


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHHHH----HHCCCCEEEEECC
Q ss_conf             5788752022221101346667899877766750--598899997465899889999999999----8629948999888
Q gi|254780648|r  237 THVLLHIVSALEENVQAAYQCILDELSAYNSELR--KKIEIVGLSQIDTVDSDTLARKKNELA----TQCGQVPFEFSSI  310 (335)
Q Consensus       237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~--~Kp~IIVlNKiDl~~~e~~~~~~~~l~----~~~~~~vi~ISA~  310 (335)
T Consensus        69 ~~~iI~VvDssd~~~~~~~~~~l~~ll~-~~~~~~~~~PiLI~~NK~D~~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~  147 (162)
T cd04157          69 IQGIIFVIDSSDRLRLVVVKDELELLLN-HPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNAL  147 (162)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHH-CHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECC
T ss_conf             7448999707638889999999999971-765517984599998147788999999999885866524896499997897


Q ss_pred             CCCCHHHHHHHHHH
Q ss_conf             78899999999999
Q gi|254780648|r  311 TGHGIPQILECLHD  324 (335)
Q Consensus       311 tg~GI~eL~~~I~e  324 (335)
T Consensus       148 tG~Gi~e~f~WL~~  161 (162)
T cd04157         148 TGEGLDEGVQWLQA  161 (162)
T ss_pred             CCCCHHHHHHHHHC
T ss_conf             89798999999865