HHsearch alignment for GI: 254780648 and conserved domain: cd04162
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.65 E-value=2.7e-16 Score=118.62 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=103.5
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102----66329868998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
T Consensus 2 IlilGLd~aGKTTil~~l~~~~~~------~~~~PT~Gf~~~~i~~~~~~l~~wDlgGq----~~~R~~W~---~Y~~~~ 68 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL------ESVVPTTGFNSVAIPTQDAIMELLEIGGS----QNLRKYWK---RYLSGS 68 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC------CCCCCCCCCCEEEEEECCEEEEEEECCCH----HHHHHHHH---HHHHCC
T ss_conf 999967999899999998169987------65356327746999989999999853752----88865699---871177
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH--H---CCCCEEEEECCCC
Q ss_conf 7887520222211013466678998777667505988999974658998899999999998--6---2994899988878
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELAT--Q---CGQVPFEFSSITG 312 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~--~---~~~~vi~ISA~tg 312 (335)
T Consensus 69 ~gIIfVVDssD~~r---l~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~s~~ei~~~L~L~~i~~~r~w-~iq~~s~~g 144 (164)
T cd04162 69 QGLIFVVDSADSER---LPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRW-ILQGTSLDD 144 (164)
T ss_pred CEEEEEEECCCHHH---HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCE-EEEEECCCC
T ss_conf 58999995688889---99999999999708799869999863243369999999986699463799988-997110479
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 89999999999999854
Q gi|254780648|r 313 HGIPQILECLHDKIFSI 329 (335)
Q Consensus 313 ~GI~eL~~~I~e~L~~~ 329 (335)
T Consensus 145 ~gl~~~~~~l~~~~~~~ 161 (164)
T cd04162 145 DGSPSRMEAVKDLLSQL 161 (164)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 98589999999999998