HHsearch alignment for GI: 254780648 and conserved domain: cd04162

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.65  E-value=2.7e-16  Score=118.62  Aligned_cols=151  Identities=17%  Similarity=0.206  Sum_probs=103.5

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             12442167775303541014540121211000000102----66329868998226421247311677512344333335
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERT  237 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~  237 (335)
T Consensus         2 IlilGLd~aGKTTil~~l~~~~~~------~~~~PT~Gf~~~~i~~~~~~l~~wDlgGq----~~~R~~W~---~Y~~~~   68 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSL------ESVVPTTGFNSVAIPTQDAIMELLEIGGS----QNLRKYWK---RYLSGS   68 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCC------CCCCCCCCCCEEEEEECCEEEEEEECCCH----HHHHHHHH---HHHHCC
T ss_conf             999967999899999998169987------65356327746999989999999853752----88865699---871177


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH--H---CCCCEEEEECCCC
Q ss_conf             7887520222211013466678998777667505988999974658998899999999998--6---2994899988878
Q gi|254780648|r  238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELAT--Q---CGQVPFEFSSITG  312 (335)
Q Consensus       238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~--~---~~~~vi~ISA~tg  312 (335)
T Consensus        69 ~gIIfVVDssD~~r---l~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~s~~ei~~~L~L~~i~~~r~w-~iq~~s~~g  144 (164)
T cd04162          69 QGLIFVVDSADSER---LPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRW-ILQGTSLDD  144 (164)
T ss_pred             CEEEEEEECCCHHH---HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCE-EEEEECCCC
T ss_conf             58999995688889---99999999999708799869999863243369999999986699463799988-997110479


Q ss_pred             CCHHHHHHHHHHHHHHH
Q ss_conf             89999999999999854
Q gi|254780648|r  313 HGIPQILECLHDKIFSI  329 (335)
Q Consensus       313 ~GI~eL~~~I~e~L~~~  329 (335)
T Consensus       145 ~gl~~~~~~l~~~~~~~  161 (164)
T cd04162         145 DGSPSRMEAVKDLLSQL  161 (164)
T ss_pred             CCCHHHHHHHHHHHHHH
T ss_conf             98589999999999998