HHsearch alignment for GI: 254780648 and conserved domain: cd04172
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.28 E-value=1.2e-11 Score=90.35 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=98.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHH--HHHH
Q ss_conf 1244216777530354101454012121100000010-2663298--689982264212473116775123443--3333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLK--HTER 236 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLr--hIer 236 (335)
T Consensus 8 ivlvGd~~VGKTsLi~r~~~~~F-~~~y~-pTi~~~~~~~~~i~~~~v~l~iwDTaGqe~---------f~~l~~~~y~~ 76 (182)
T cd04172 8 IVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFENYTASFEIDTQRIELSLWDTSGSPY---------YDNVRPLSYPD 76 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CEEEEEEEEEEEECCEEEEEEEEECCCCHH---------CCCCCHHHHCC
T ss_conf 99999999899999999983999-99868-735322689999999999999996898620---------12212555127
Q ss_pred HHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-------------HHHHHHHHHHHCC-
Q ss_conf 5788752022221101346-667899877766750598899997465899889-------------9999999998629-
Q gi|254780648|r 237 THVLLHIVSALEENVQAAY-QCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-------------LARKKNELATQCG- 301 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~-~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-------------~~~~~~~l~~~~~- 301 (335)
T Consensus 77 ~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~---~~~iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~~~A~~~g~ 153 (182)
T cd04172 77 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA 153 (182)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 87899996489778899999999999998687---998899961710124414566776456778699999999997699
Q ss_pred CCEEEEECCCCCC-HHHHHHHHHHHH
Q ss_conf 9489998887889-999999999999
Q gi|254780648|r 302 QVPFEFSSITGHG-IPQILECLHDKI 326 (335)
Q Consensus 302 ~~vi~ISA~tg~G-I~eL~~~I~e~L 326 (335)
T Consensus 154 ~~y~EtSAk~~~n~V~e~F~~a~~a~ 179 (182)
T cd04172 154 ATYIECSALQSENSVRDIFHVATLAC 179 (182)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 79999170789959899999999998