HHsearch alignment for GI: 254780648 and conserved domain: cd04172

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.28  E-value=1.2e-11  Score=90.35  Aligned_cols=151  Identities=15%  Similarity=0.135  Sum_probs=98.6

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHH--HHHH
Q ss_conf             1244216777530354101454012121100000010-2663298--689982264212473116775123443--3333
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLK--HTER  236 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLr--hIer  236 (335)
T Consensus         8 ivlvGd~~VGKTsLi~r~~~~~F-~~~y~-pTi~~~~~~~~~i~~~~v~l~iwDTaGqe~---------f~~l~~~~y~~   76 (182)
T cd04172           8 IVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFENYTASFEIDTQRIELSLWDTSGSPY---------YDNVRPLSYPD   76 (182)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CEEEEEEEEEEEECCEEEEEEEEECCCCHH---------CCCCCHHHHCC
T ss_conf             99999999899999999983999-99868-735322689999999999999996898620---------12212555127


Q ss_pred             HHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-------------HHHHHHHHHHHCC-
Q ss_conf             5788752022221101346-667899877766750598899997465899889-------------9999999998629-
Q gi|254780648|r  237 THVLLHIVSALEENVQAAY-QCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-------------LARKKNELATQCG-  301 (335)
Q Consensus       237 ~~vLl~VVD~s~~d~~~~~-~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-------------~~~~~~~l~~~~~-  301 (335)
T Consensus        77 ~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~---~~~iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~~~A~~~g~  153 (182)
T cd04172          77 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA  153 (182)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf             87899996489778899999999999998687---998899961710124414566776456778699999999997699


Q ss_pred             CCEEEEECCCCCC-HHHHHHHHHHHH
Q ss_conf             9489998887889-999999999999
Q gi|254780648|r  302 QVPFEFSSITGHG-IPQILECLHDKI  326 (335)
Q Consensus       302 ~~vi~ISA~tg~G-I~eL~~~I~e~L  326 (335)
T Consensus       154 ~~y~EtSAk~~~n~V~e~F~~a~~a~  179 (182)
T cd04172         154 ATYIECSALQSENSVRDIFHVATLAC  179 (182)
T ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             79999170789959899999999998