HHsearch alignment for GI: 254780648 and conserved domain: cd04175

>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.58  E-value=4.6e-15  Score=111.14  Aligned_cols=154  Identities=16%  Similarity=0.129  Sum_probs=106.7

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-CEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHH--HHHH
Q ss_conf             124421677753035410145401212110000001-026632986--89982264212473116775123443--3333
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-LGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLK--HTER  236 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLr--hIer  236 (335)
T Consensus         4 IvllGd~~VGKTsli~r~~~~~f-~~~y~pT-i~~~~~k~i~~~~~~~~l~iwDtaG~e----~-----~~~l~~~y~~~   72 (164)
T cd04175           4 LVVLGSGGVGKSALTVQFVQGIF-VEKYDPT-IEDSYRKQVEVDGQQCMLEILDTAGTE----Q-----FTAMRDLYMKN   72 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCC-CCCCCCC-EEEEEEEEEEECCEEEEEEECCCCCCH----H-----HHHHHHHHHCC
T ss_conf             99989999759999999970928-8656884-046899999999999999851477543----2-----45678887357


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf             57887520222211013466678998777667505988999974658998899-99999999862994899988878899
Q gi|254780648|r  237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGI  315 (335)
Q Consensus       237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI  315 (335)
T Consensus        73 a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~DL~~~r~V~~~~~~~~a~~~~~~~~E~SAk~~~nV  151 (164)
T cd04175          73 GQGFVLVYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINV  151 (164)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf             868999960787778999999999999862-8999639985214572220689999999999985999999668988178


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999998
Q gi|254780648|r  316 PQILECLHDKIF  327 (335)
Q Consensus       316 ~eL~~~I~e~L~  327 (335)
T Consensus       152 ~~~F~~l~~~i~  163 (164)
T cd04175         152 NEIFYDLVRQIN  163 (164)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999866