Query gi|254780648|ref|YP_003065061.1| GTPase ObgE [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 335
No_of_seqs 252 out of 4298
Neff 6.1
Searched_HMMs 39220
Date Sun May 29 21:19:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780648.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02729 Obg_CgtA GTP-binding 100.0 0 0 983.9 20.5 283 3-285 1-296 (296)
2 PRK12298 obgE GTPase ObgE; Rev 100.0 0 0 898.2 29.7 332 1-332 1-338 (380)
3 COG0536 Obg Predicted GTPase [ 100.0 0 0 891.0 26.6 330 1-330 1-336 (369)
4 PRK12299 obgE GTPase ObgE; Rev 100.0 0 0 873.1 29.7 333 2-334 1-334 (334)
5 PRK12296 obgE GTPase ObgE; Rev 100.0 0 0 870.5 28.6 332 1-333 2-346 (495)
6 PRK12297 obgE GTPase ObgE; Rev 100.0 0 0 868.0 28.7 329 3-332 2-334 (429)
7 KOG1489 consensus 100.0 0 0 692.1 21.1 320 2-325 40-365 (366)
8 pfam01018 GTP1_OBG GTP1/OBG. T 100.0 0 0 414.8 16.8 156 3-158 1-156 (156)
9 cd01898 Obg Obg subfamily. Th 100.0 0 0 321.7 9.7 167 160-326 1-170 (170)
10 cd01896 DRG The developmentall 100.0 1.4E-45 0 297.8 9.2 163 160-330 1-229 (233)
11 cd01881 Obg_like The Obg-like 100.0 6.3E-43 0 280.0 8.1 163 164-326 1-176 (176)
12 cd01899 Ygr210 Ygr210 subfamil 100.0 5.4E-41 1.4E-45 268.3 4.0 153 162-316 1-257 (318)
13 PTZ00258 GTP-binding protein; 100.0 8.6E-39 2.2E-43 255.0 10.0 166 143-318 16-271 (392)
14 COG0012 Predicted GTPase, prob 100.0 2.7E-39 6.9E-44 258.0 6.1 160 161-320 4-257 (372)
15 PRK09601 translation-associate 100.0 1.6E-38 4E-43 253.4 9.5 152 161-312 4-242 (364)
16 PRK09602 translation-associate 100.0 8.1E-39 2E-43 255.2 6.9 146 161-310 4-253 (396)
17 COG1163 DRG Predicted GTPase [ 100.0 9E-39 2.3E-43 254.9 6.3 164 159-330 63-292 (365)
18 cd01878 HflX HflX subfamily. 100.0 9.3E-38 2.4E-42 248.7 8.3 160 159-326 41-204 (204)
19 cd01897 NOG NOG1 is a nucleola 100.0 3.7E-37 9.3E-42 245.1 8.9 160 161-326 2-167 (168)
20 cd01879 FeoB Ferrous iron tran 100.0 3.7E-37 9.3E-42 245.1 7.2 156 164-328 1-158 (158)
21 pfam02421 FeoB_N Ferrous iron 100.0 5.6E-37 1.4E-41 244.0 7.6 159 161-328 1-161 (188)
22 TIGR03156 GTP_HflX GTP-binding 100.0 5.7E-37 1.5E-41 243.9 5.8 159 159-326 189-351 (351)
23 TIGR00092 TIGR00092 GTP-bindin 100.0 1.7E-36 4.4E-41 241.0 4.4 169 162-330 5-274 (390)
24 cd01900 YchF YchF subfamily. 100.0 5.5E-36 1.4E-40 238.0 6.2 157 162-318 1-244 (274)
25 cd04163 Era Era subfamily. Er 100.0 3.3E-35 8.3E-40 233.3 9.0 160 161-326 5-168 (168)
26 PRK00089 era GTP-binding prote 100.0 2.6E-35 6.6E-40 233.9 8.3 162 161-328 10-174 (296)
27 cd01895 EngA2 EngA2 subfamily. 100.0 3.4E-34 8.6E-39 227.1 10.2 159 161-325 4-173 (174)
28 cd04164 trmE TrmE (MnmE, ThdF, 100.0 1.3E-34 3.2E-39 229.8 7.4 150 162-325 4-155 (157)
29 cd01894 EngA1 EngA1 subfamily. 100.0 2.7E-34 6.8E-39 227.8 7.6 155 163-326 1-157 (157)
30 cd00880 Era_like Era (E. coli 100.0 1.2E-33 3E-38 223.9 8.3 157 164-326 1-163 (163)
31 PRK11058 putative GTPase HflX; 100.0 2E-32 5.1E-37 216.4 7.0 166 159-331 197-366 (426)
32 cd01876 YihA_EngB The YihA (En 100.0 2.8E-32 7.2E-37 215.5 7.0 157 161-326 1-170 (170)
33 KOG1491 consensus 100.0 5.4E-32 1.4E-36 213.8 6.8 169 140-318 11-276 (391)
34 COG1084 Predicted GTPase [Gene 100.0 6.4E-31 1.6E-35 207.3 8.7 158 162-325 171-334 (346)
35 PRK09518 bifunctional cytidyla 100.0 4.6E-30 1.2E-34 202.1 10.9 164 161-330 454-626 (714)
36 PRK04213 GTP-binding protein; 100.0 8.3E-31 2.1E-35 206.6 6.8 170 160-335 2-192 (195)
37 PRK00454 engB GTPase EngB; Rev 100.0 1.4E-30 3.6E-35 205.2 6.9 159 160-327 25-196 (196)
38 COG1159 Era GTPase [General fu 100.0 3.6E-30 9.2E-35 202.7 7.4 158 162-328 9-173 (298)
39 COG2262 HflX GTPases [General 100.0 5.4E-30 1.4E-34 201.7 7.8 166 159-332 192-361 (411)
40 COG1160 Predicted GTPases [Gen 100.0 3.6E-30 9.2E-35 202.7 6.7 164 160-329 179-353 (444)
41 PRK03003 engA GTP-binding prot 100.0 4.7E-30 1.2E-34 202.0 6.7 164 161-330 213-385 (474)
42 PRK00093 engA GTP-binding prot 100.0 9E-30 2.3E-34 200.3 7.8 164 161-330 174-348 (438)
43 TIGR03594 GTPase_EngA ribosome 100.0 7.2E-30 1.8E-34 200.9 7.1 164 161-330 174-347 (429)
44 TIGR03594 GTPase_EngA ribosome 100.0 7.6E-29 1.9E-33 194.7 11.6 160 162-330 2-163 (429)
45 PRK03003 engA GTP-binding prot 100.0 6.2E-29 1.6E-33 195.2 10.8 163 159-330 38-202 (474)
46 PRK09554 feoB ferrous iron tra 100.0 5.3E-30 1.3E-34 201.7 5.1 155 162-325 6-166 (772)
47 PRK00093 engA GTP-binding prot 100.0 1.2E-28 3E-33 193.6 11.1 163 161-332 3-168 (438)
48 PRK09518 bifunctional cytidyla 100.0 1E-28 2.6E-33 194.0 7.1 165 157-331 277-444 (714)
49 TIGR00437 feoB ferrous iron tr 99.9 1.3E-29 3.3E-34 199.3 0.4 152 166-326 1-155 (733)
50 COG0370 FeoB Fe2+ transport sy 99.9 1.6E-28 4E-33 192.8 5.3 158 161-327 5-164 (653)
51 KOG1486 consensus 99.9 3.3E-28 8.5E-33 190.8 6.9 163 160-330 63-291 (364)
52 PRK05291 trmE tRNA modificatio 99.9 9.6E-28 2.5E-32 188.0 6.5 152 160-330 217-370 (445)
53 TIGR03598 GTPase_YsxC ribosome 99.9 1.1E-27 2.8E-32 187.7 6.0 148 160-316 19-179 (179)
54 COG1160 Predicted GTPases [Gen 99.9 5.3E-26 1.4E-30 177.5 10.8 158 161-327 5-165 (444)
55 COG0486 ThdF Predicted GTPase 99.9 1.8E-26 4.5E-31 180.4 6.2 158 161-329 219-378 (454)
56 KOG1490 consensus 99.9 9.9E-26 2.5E-30 175.8 9.0 167 161-333 170-347 (620)
57 pfam10662 PduV-EutP Ethanolami 99.9 3.2E-26 8.1E-31 178.8 5.7 139 162-324 4-143 (143)
58 cd04171 SelB SelB subfamily. 99.9 3.3E-25 8.5E-30 172.6 9.7 150 162-324 3-163 (164)
59 pfam00009 GTP_EFTU Elongation 99.9 3.3E-25 8.5E-30 172.6 9.6 155 160-327 4-184 (185)
60 KOG1487 consensus 99.9 6.2E-26 1.6E-30 177.0 2.7 166 157-330 57-284 (358)
61 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.3E-23 5.8E-28 161.5 9.7 149 162-327 3-166 (168)
62 TIGR00450 thdF tRNA modificati 99.9 8.7E-24 2.2E-28 164.0 3.5 162 160-330 226-390 (473)
63 KOG1423 consensus 99.9 2.7E-22 6.9E-27 155.0 9.4 189 126-326 45-270 (379)
64 cd00881 GTP_translation_factor 99.9 1.3E-21 3.4E-26 150.8 9.7 150 161-327 1-187 (189)
65 pfam00025 Arf ADP-ribosylation 99.9 9.9E-22 2.5E-26 151.6 8.6 154 162-326 17-174 (174)
66 cd04160 Arfrp1 Arfrp1 subfamil 99.9 7.5E-22 1.9E-26 152.3 7.1 156 162-325 2-167 (167)
67 KOG1191 consensus 99.8 8.7E-23 2.2E-27 158.0 0.5 175 157-331 266-454 (531)
68 cd04155 Arl3 Arl3 subfamily. 99.8 4.6E-21 1.2E-25 147.5 8.1 154 160-324 15-172 (173)
69 cd00878 Arf_Arl Arf (ADP-ribos 99.8 4.7E-21 1.2E-25 147.5 7.2 153 162-325 2-158 (158)
70 cd04154 Arl2 Arl2 subfamily. 99.8 1E-20 2.7E-25 145.4 8.7 149 161-324 16-172 (173)
71 cd04159 Arl10_like Arl10-like 99.8 2.4E-20 6.1E-25 143.2 8.9 154 161-324 1-158 (159)
72 COG0218 Predicted GTPase [Gene 99.8 2.2E-20 5.7E-25 143.4 7.9 161 158-329 23-199 (200)
73 cd04157 Arl6 Arl6 subfamily. 99.8 1.9E-20 4.7E-25 143.8 6.9 151 161-324 1-161 (162)
74 KOG0410 consensus 99.8 2.1E-21 5.4E-26 149.6 1.0 166 153-329 172-343 (410)
75 PTZ00133 ADP-ribosylation fact 99.8 1.7E-19 4.3E-24 138.0 8.7 157 161-330 19-181 (182)
76 cd00879 Sar1 Sar1 subfamily. 99.8 1.4E-19 3.6E-24 138.5 7.4 154 160-326 20-190 (190)
77 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2.7E-19 6.8E-24 136.8 7.9 148 162-324 2-159 (160)
78 cd04158 ARD1 ARD1 subfamily. 99.8 5.4E-19 1.4E-23 135.0 8.4 158 162-330 2-164 (169)
79 smart00177 ARF ARF-like small 99.8 4.4E-19 1.1E-23 135.5 7.6 153 162-327 16-174 (175)
80 cd04150 Arf1_5_like Arf1-Arf5- 99.8 4.3E-19 1.1E-23 135.6 7.1 152 162-324 3-158 (159)
81 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 5.8E-19 1.5E-23 134.8 7.5 152 162-324 18-173 (174)
82 smart00178 SAR Sar1p-like memb 99.8 6.6E-19 1.7E-23 134.4 7.3 154 160-326 18-184 (184)
83 cd04161 Arl2l1_Arl13_like Arl2 99.8 4.9E-19 1.2E-23 135.2 5.9 148 162-324 2-166 (167)
84 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 3.7E-18 9.5E-23 129.9 8.9 155 162-331 6-174 (183)
85 pfam01926 MMR_HSR1 GTPase of u 99.8 2.8E-19 7.2E-24 136.7 3.1 104 171-280 1-106 (106)
86 cd04149 Arf6 Arf6 subfamily. 99.8 2.4E-18 6E-23 131.1 7.7 152 162-324 12-167 (168)
87 cd04151 Arl1 Arl1 subfamily. 99.7 6.1E-18 1.5E-22 128.6 8.4 146 162-324 2-157 (158)
88 pfam00071 Ras Ras family. Incl 99.7 8.9E-18 2.3E-22 127.6 8.4 155 162-327 2-161 (162)
89 cd04118 Rab24 Rab24 subfamily. 99.7 4.2E-17 1.1E-21 123.5 7.5 159 162-331 3-170 (193)
90 cd00154 Rab Rab family. Rab G 99.7 7.9E-17 2E-21 121.8 8.1 152 162-324 3-159 (159)
91 cd00882 Ras_like_GTPase Ras-li 99.7 4.6E-17 1.2E-21 123.2 6.7 152 164-323 1-156 (157)
92 cd01890 LepA LepA subfamily. 99.7 1.2E-16 3.1E-21 120.7 8.8 149 161-327 2-177 (179)
93 cd04112 Rab26 Rab26 subfamily. 99.7 6.5E-17 1.7E-21 122.3 7.0 161 162-332 3-168 (191)
94 cd04124 RabL2 RabL2 subfamily. 99.7 2.1E-16 5.3E-21 119.3 9.2 154 162-329 3-160 (161)
95 cd04110 Rab35 Rab35 subfamily. 99.7 1.5E-16 3.9E-21 120.1 8.2 160 162-333 9-173 (199)
96 cd04125 RabA_like RabA-like su 99.7 1.4E-16 3.6E-21 120.3 7.8 162 162-334 3-169 (188)
97 cd00876 Ras Ras family. The R 99.7 2E-16 5.2E-21 119.4 7.9 156 162-326 2-160 (160)
98 smart00175 RAB Rab subfamily o 99.7 2.4E-16 6.2E-21 118.9 7.8 156 162-328 3-163 (164)
99 cd01863 Rab18 Rab18 subfamily. 99.7 1.8E-16 4.6E-21 119.7 6.6 155 162-326 3-161 (161)
100 PTZ00132 GTP-binding nuclear p 99.7 2.1E-16 5.4E-21 119.3 6.9 152 162-330 9-168 (209)
101 cd01867 Rab8_Rab10_Rab13_like 99.7 2.1E-16 5.4E-21 119.2 6.9 152 162-328 6-166 (167)
102 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 2.7E-16 6.9E-21 118.6 7.3 151 162-329 2-161 (164)
103 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 2.2E-16 5.5E-21 119.2 6.8 157 160-330 1-168 (170)
104 cd04114 Rab30 Rab30 subfamily. 99.7 3.2E-16 8.3E-21 118.1 7.6 150 162-326 10-168 (169)
105 cd04117 Rab15 Rab15 subfamily. 99.6 4E-16 1E-20 117.6 7.3 150 162-326 3-161 (161)
106 cd04123 Rab21 Rab21 subfamily. 99.6 5E-16 1.3E-20 117.0 7.5 155 162-326 3-161 (162)
107 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 9.1E-16 2.3E-20 115.4 8.7 152 162-328 5-165 (166)
108 cd04121 Rab40 Rab40 subfamily. 99.6 8.6E-16 2.2E-20 115.6 8.5 159 161-331 8-171 (189)
109 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1.7E-15 4.2E-20 113.8 9.8 155 162-332 3-171 (182)
110 cd04144 Ras2 Ras2 subfamily. 99.6 6.4E-16 1.6E-20 116.3 7.4 156 162-332 2-168 (190)
111 cd04139 RalA_RalB RalA/RalB su 99.6 1E-15 2.6E-20 115.1 8.4 157 162-328 3-163 (164)
112 smart00173 RAS Ras subfamily o 99.6 9.7E-16 2.5E-20 115.2 8.2 158 162-328 3-163 (164)
113 cd01889 SelB_euk SelB subfamil 99.6 2.3E-15 5.9E-20 113.0 9.8 149 161-326 2-185 (192)
114 cd01868 Rab11_like Rab11-like. 99.6 9E-16 2.3E-20 115.4 7.6 151 162-327 6-165 (165)
115 cd04146 RERG_RasL11_like RERG/ 99.6 9.4E-16 2.4E-20 115.3 7.6 159 162-327 2-164 (165)
116 cd04122 Rab14 Rab14 subfamily. 99.6 3.2E-16 8.2E-21 118.2 5.1 156 162-328 5-165 (166)
117 cd04113 Rab4 Rab4 subfamily. 99.6 4.1E-16 1E-20 117.5 5.5 150 162-326 3-161 (161)
118 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 1.6E-15 4E-20 114.0 8.3 159 162-333 3-174 (201)
119 cd04101 RabL4 RabL4 (Rab-like4 99.6 1.2E-15 3E-20 114.7 7.4 154 162-326 3-163 (164)
120 KOG0073 consensus 99.6 4E-15 1E-19 111.5 10.2 152 162-329 19-180 (185)
121 cd01860 Rab5_related Rab5-rela 99.6 6E-16 1.5E-20 116.5 5.9 150 162-326 4-162 (163)
122 cd04138 H_N_K_Ras_like H-Ras/N 99.6 5.3E-16 1.3E-20 116.8 5.6 155 162-326 4-161 (162)
123 cd04137 RheB Rheb (Ras Homolog 99.6 2.3E-15 5.8E-20 113.0 8.8 160 162-331 4-167 (180)
124 cd01865 Rab3 Rab3 subfamily. 99.6 1.7E-15 4.4E-20 113.7 7.8 152 162-328 4-164 (165)
125 cd04127 Rab27A Rab27a subfamil 99.6 2.3E-15 5.9E-20 112.9 8.4 154 161-328 6-178 (180)
126 cd04111 Rab39 Rab39 subfamily. 99.6 2.8E-15 7.3E-20 112.4 8.8 159 162-334 5-173 (211)
127 cd00877 Ran Ran (Ras-related n 99.6 2.5E-15 6.4E-20 112.7 8.2 152 162-330 3-162 (166)
128 cd01862 Rab7 Rab7 subfamily. 99.6 1.4E-15 3.6E-20 114.3 6.8 158 162-332 3-172 (172)
129 cd04109 Rab28 Rab28 subfamily. 99.6 4.2E-15 1.1E-19 111.4 8.7 156 162-330 3-169 (215)
130 cd04116 Rab9 Rab9 subfamily. 99.6 1.8E-15 4.5E-20 113.7 6.6 152 162-326 8-170 (170)
131 cd04148 RGK RGK subfamily. Th 99.6 1.9E-15 4.8E-20 113.5 6.7 156 162-327 3-163 (221)
132 cd04119 RJL RJL (RabJ-Like) su 99.6 4.6E-15 1.2E-19 111.2 8.6 157 162-327 3-167 (168)
133 cd01864 Rab19 Rab19 subfamily. 99.6 8.6E-16 2.2E-20 115.5 4.9 154 162-326 6-165 (165)
134 cd01866 Rab2 Rab2 subfamily. 99.6 3.5E-15 8.9E-20 111.9 7.9 156 162-328 7-167 (168)
135 cd01888 eIF2_gamma eIF2-gamma 99.6 8.8E-15 2.2E-19 109.4 9.9 152 161-327 2-199 (203)
136 cd04136 Rap_like Rap-like subf 99.6 3.2E-15 8.1E-20 112.1 7.5 156 162-326 4-162 (163)
137 cd04176 Rap2 Rap2 subgroup. T 99.6 5.7E-15 1.4E-19 110.6 8.3 153 162-326 4-162 (163)
138 cd04145 M_R_Ras_like M-Ras/R-R 99.6 4.1E-15 1E-19 111.4 7.6 156 162-326 5-163 (164)
139 PRK12312 infB translation init 99.6 7.5E-15 1.9E-19 109.8 8.7 150 161-330 119-284 (610)
140 cd04175 Rap1 Rap1 subgroup. T 99.6 4.6E-15 1.2E-19 111.1 7.4 154 162-327 4-163 (164)
141 smart00174 RHO Rho (Ras homolo 99.6 8.1E-15 2.1E-19 109.6 8.6 154 162-327 1-172 (174)
142 cd04106 Rab23_lke Rab23-like s 99.6 3.5E-15 8.8E-20 111.9 6.4 152 162-325 3-161 (162)
143 cd04120 Rab12 Rab12 subfamily. 99.6 6.7E-15 1.7E-19 110.2 7.4 154 162-330 3-166 (202)
144 cd04126 Rab20 Rab20 subfamily. 99.6 1.8E-14 4.5E-19 107.6 9.5 153 162-330 3-193 (220)
145 cd04177 RSR1 RSR1 subgroup. R 99.6 1.2E-14 3E-19 108.6 8.5 158 162-329 4-166 (168)
146 cd04132 Rho4_like Rho4-like su 99.6 8.4E-15 2.1E-19 109.6 7.5 157 162-330 3-170 (187)
147 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.5E-14 3.8E-19 108.1 8.5 153 162-328 5-170 (170)
148 cd01861 Rab6 Rab6 subfamily. 99.6 7.5E-15 1.9E-19 109.9 6.6 154 162-326 3-161 (161)
149 cd04147 Ras_dva Ras-dva subfam 99.6 1.1E-14 2.7E-19 108.9 7.4 161 162-331 2-167 (198)
150 cd01891 TypA_BipA TypA (tyrosi 99.6 5.3E-14 1.4E-18 104.7 10.7 150 160-326 3-191 (194)
151 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 9.9E-15 2.5E-19 109.1 6.9 159 162-330 5-167 (172)
152 cd00157 Rho Rho (Ras homology) 99.6 1.3E-14 3.4E-19 108.4 7.5 152 162-324 3-170 (171)
153 cd04133 Rop_like Rop subfamily 99.5 2.3E-14 5.9E-19 106.9 8.6 155 162-328 4-174 (176)
154 cd01893 Miro1 Miro1 subfamily. 99.5 1E-14 2.6E-19 109.0 6.6 154 162-327 3-164 (166)
155 cd01870 RhoA_like RhoA-like su 99.5 2.5E-14 6.4E-19 106.7 8.5 154 162-326 4-174 (175)
156 smart00176 RAN Ran (Ras-relate 99.5 9E-15 2.3E-19 109.4 6.2 149 165-330 1-157 (200)
157 cd04140 ARHI_like ARHI subfami 99.5 2E-14 5.2E-19 107.2 7.6 155 162-325 4-163 (165)
158 cd01892 Miro2 Miro2 subfamily. 99.5 2.3E-14 5.9E-19 106.9 7.5 154 162-327 7-166 (169)
159 cd04134 Rho3 Rho3 subfamily. 99.5 3.2E-14 8.1E-19 106.1 8.2 159 162-332 3-179 (189)
160 cd04129 Rho2 Rho2 subfamily. 99.5 4.6E-14 1.2E-18 105.1 8.0 162 161-333 3-179 (187)
161 KOG0070 consensus 99.5 9.9E-14 2.5E-18 103.1 9.5 151 161-329 19-180 (181)
162 cd01871 Rac1_like Rac1-like su 99.5 5.8E-14 1.5E-18 104.5 7.9 151 162-326 4-174 (174)
163 cd04105 SR_beta Signal recogni 99.5 4.1E-14 1E-18 105.4 6.7 114 161-286 2-124 (203)
164 cd04142 RRP22 RRP22 subfamily. 99.5 5.3E-14 1.3E-18 104.7 7.2 161 162-331 3-178 (198)
165 cd04135 Tc10 TC10 subfamily. 99.5 8.2E-14 2.1E-18 103.5 8.1 151 162-326 3-173 (174)
166 CHL00189 infB translation init 99.5 1.1E-13 2.9E-18 102.7 8.8 150 162-331 275-444 (770)
167 PRK05306 infB translation init 99.5 1.6E-13 4.1E-18 101.8 8.6 149 162-330 344-509 (839)
168 cd04143 Rhes_like Rhes_like su 99.5 6.2E-14 1.6E-18 104.3 6.1 151 162-326 3-170 (247)
169 PRK04000 translation initiatio 99.5 2E-13 5E-18 101.3 7.9 154 160-328 9-201 (410)
170 cd04130 Wrch_1 Wrch-1 subfamil 99.5 2.4E-13 6.1E-18 100.8 8.3 150 162-323 3-170 (173)
171 cd01875 RhoG RhoG subfamily. 99.5 3E-13 7.5E-18 100.2 8.3 152 162-330 6-180 (191)
172 cd01874 Cdc42 Cdc42 subfamily. 99.5 4.7E-13 1.2E-17 99.0 9.1 152 162-325 4-173 (175)
173 PRK10512 selenocysteinyl-tRNA- 99.5 3.6E-13 9.1E-18 99.7 8.5 149 162-331 3-170 (615)
174 cd04165 GTPBP1_like GTPBP1-lik 99.4 8E-13 2E-17 97.6 9.9 145 162-323 2-219 (224)
175 cd04103 Centaurin_gamma Centau 99.4 2.8E-13 7.2E-18 100.3 7.3 150 162-326 3-158 (158)
176 cd04131 Rnd Rnd subfamily. Th 99.4 7.7E-13 2E-17 97.7 8.7 153 162-327 4-176 (178)
177 KOG0075 consensus 99.4 1.6E-12 4.1E-17 95.7 10.3 157 162-330 23-185 (186)
178 PRK04004 translation initiatio 99.4 1.1E-12 2.9E-17 96.6 9.5 143 162-323 8-213 (592)
179 KOG0076 consensus 99.4 3.7E-13 9.4E-18 99.6 5.8 156 162-330 20-190 (197)
180 cd01873 RhoBTB RhoBTB subfamil 99.4 4E-13 1E-17 99.4 5.6 147 162-324 5-193 (195)
181 cd04168 TetM_like Tet(M)-like 99.4 1.1E-12 2.9E-17 96.6 7.6 151 161-328 1-236 (237)
182 PTZ00327 eukaryotic translatio 99.4 9.7E-13 2.5E-17 97.1 7.0 154 160-328 38-237 (460)
183 TIGR00475 selB selenocysteine- 99.4 4.4E-12 1.1E-16 93.1 10.1 149 162-332 3-177 (627)
184 KOG0092 consensus 99.4 2.1E-12 5.2E-17 95.1 7.1 154 162-332 8-172 (200)
185 KOG0090 consensus 99.3 4E-12 1E-16 93.3 8.1 158 160-326 39-238 (238)
186 cd01884 EF_Tu EF-Tu subfamily. 99.3 4.9E-12 1.2E-16 92.8 8.4 148 161-326 4-192 (195)
187 cd04169 RF3 RF3 subfamily. Pe 99.3 1.3E-11 3.3E-16 90.2 9.8 110 160-286 3-138 (267)
188 cd01883 EF1_alpha Eukaryotic e 99.3 5.9E-12 1.5E-16 92.3 7.8 145 161-317 1-195 (219)
189 cd01858 NGP_1 NGP-1. Autoanti 99.3 3.9E-13 1E-17 99.4 1.7 53 161-216 104-157 (157)
190 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.3 1.1E-11 2.7E-16 90.7 8.6 149 162-328 16-189 (232)
191 pfam09439 SRPRB Signal recogni 99.3 1.4E-12 3.5E-17 96.2 3.9 121 161-293 5-134 (181)
192 COG0532 InfB Translation initi 99.3 1.6E-11 4E-16 89.7 8.8 142 162-323 8-166 (509)
193 COG3596 Predicted GTPase [Gene 99.3 3.8E-12 9.6E-17 93.5 5.4 166 159-328 39-223 (296)
194 PRK12317 elongation factor 1-a 99.3 1.4E-11 3.5E-16 90.1 8.2 142 161-318 9-197 (426)
195 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.3 1.2E-11 3.1E-16 90.4 7.4 151 162-326 8-179 (182)
196 cd01857 HSR1_MMR1 HSR1/MMR1. 99.3 1E-12 2.6E-17 96.9 1.6 54 161-217 85-139 (141)
197 TIGR00436 era GTP-binding prot 99.3 2.1E-12 5.4E-17 95.0 3.2 162 161-328 2-171 (278)
198 TIGR02528 EutP ethanolamine ut 99.3 8.3E-12 2.1E-16 91.4 6.2 139 162-323 3-143 (144)
199 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.3 3.3E-11 8.5E-16 87.8 9.1 152 162-327 4-176 (222)
200 PRK09563 rbgA ribosomal biogen 99.3 1.4E-12 3.6E-17 96.1 1.4 56 161-219 123-179 (282)
201 KOG1145 consensus 99.3 3.6E-11 9.2E-16 87.5 8.6 152 161-332 155-323 (683)
202 cd01886 EF-G Elongation factor 99.3 3.7E-11 9.5E-16 87.4 8.6 123 161-301 1-145 (270)
203 cd04178 Nucleostemin_like Nucl 99.2 1.5E-12 3.8E-17 95.9 1.5 53 161-216 119-172 (172)
204 cd04166 CysN_ATPS CysN_ATPS su 99.2 3.2E-11 8.3E-16 87.8 8.1 141 162-318 2-185 (208)
205 cd04170 EF-G_bact Elongation f 99.2 6E-11 1.5E-15 86.2 9.4 123 161-301 1-145 (268)
206 cd01849 YlqF_related_GTPase Yl 99.2 1.5E-12 3.8E-17 96.0 0.8 54 160-216 101-155 (155)
207 PTZ00141 elongation factor 1 a 99.2 3.8E-11 9.8E-16 87.4 7.9 145 160-317 8-201 (443)
208 cd01856 YlqF YlqF. Proteins o 99.2 2E-12 5.1E-17 95.1 0.9 52 162-216 118-170 (171)
209 KOG0078 consensus 99.2 6.9E-11 1.8E-15 85.8 8.7 151 162-328 15-175 (207)
210 KOG0084 consensus 99.2 5.7E-11 1.5E-15 86.3 8.2 151 162-331 12-176 (205)
211 PTZ00099 rab6; Provisional 99.2 3.9E-11 1E-15 87.3 7.3 123 201-332 22-147 (176)
212 TIGR03596 GTPase_YlqF ribosome 99.2 2.5E-12 6.3E-17 94.6 1.1 55 162-219 121-176 (276)
213 PRK13768 GTPase; Provisional 99.2 2.9E-11 7.3E-16 88.1 6.4 161 162-327 5-247 (253)
214 PRK00049 elongation factor Tu; 99.2 6.2E-11 1.6E-15 86.1 7.8 148 160-326 13-203 (397)
215 TIGR01393 lepA GTP-binding pro 99.2 2.6E-11 6.6E-16 88.4 5.8 108 206-328 71-182 (598)
216 PRK05433 GTP-binding protein L 99.2 2.1E-11 5.3E-16 89.0 5.1 160 155-328 3-185 (601)
217 PRK12736 elongation factor Tu; 99.2 8.5E-11 2.2E-15 85.3 8.0 149 160-325 13-199 (394)
218 cd01859 MJ1464 MJ1464. This f 99.2 3.3E-12 8.3E-17 93.9 0.7 53 161-216 103-156 (156)
219 TIGR00231 small_GTP small GTP- 99.2 9E-11 2.3E-15 85.1 7.9 157 160-322 4-184 (186)
220 COG1100 GTPase SAR1 and relate 99.2 2.3E-11 5.9E-16 88.7 4.6 158 160-329 6-187 (219)
221 TIGR00491 aIF-2 translation in 99.2 1.8E-10 4.5E-15 83.3 8.9 99 207-327 616-764 (1145)
222 KOG0071 consensus 99.2 7.5E-11 1.9E-15 85.6 6.7 148 161-326 19-177 (180)
223 PRK12735 elongation factor Tu; 99.2 1.4E-10 3.6E-15 83.9 8.1 150 160-326 13-202 (396)
224 COG5256 TEF1 Translation elong 99.1 1.3E-10 3.4E-15 84.1 7.4 149 160-319 8-203 (428)
225 COG1161 Predicted GTPases [Gen 99.1 7.9E-12 2E-16 91.5 0.7 57 160-219 133-190 (322)
226 COG5257 GCD11 Translation init 99.1 2.2E-10 5.7E-15 82.7 7.7 151 160-328 11-203 (415)
227 PRK00741 prfC peptide chain re 99.1 2.4E-10 6.2E-15 82.5 7.9 113 156-285 7-145 (526)
228 PTZ00336 elongation factor 1-a 99.1 7.1E-11 1.8E-15 85.8 5.0 145 160-317 8-203 (449)
229 pfam03308 ArgK ArgK protein. T 99.1 3.4E-10 8.7E-15 81.6 7.5 73 261-333 157-236 (267)
230 KOG0462 consensus 99.1 1.1E-09 2.8E-14 78.5 9.7 157 159-328 60-236 (650)
231 pfam00350 Dynamin_N Dynamin fa 99.1 3E-11 7.6E-16 88.0 1.6 111 162-281 1-168 (168)
232 COG3276 SelB Selenocysteine-sp 99.1 1.6E-09 4E-14 77.6 9.9 149 162-327 3-162 (447)
233 KOG0094 consensus 99.1 4.3E-10 1.1E-14 81.0 6.9 152 160-329 23-187 (221)
234 KOG0395 consensus 99.1 4.5E-09 1.1E-13 74.8 11.8 159 161-328 5-166 (196)
235 CHL00071 tufA elongation facto 99.1 6.4E-10 1.6E-14 80.0 7.5 134 160-312 13-178 (409)
236 KOG0087 consensus 99.0 1E-09 2.6E-14 78.7 8.3 152 162-331 17-180 (222)
237 cd01855 YqeH YqeH. YqeH is an 99.0 2.6E-11 6.7E-16 88.3 -0.1 52 161-216 129-190 (190)
238 PRK09435 arginine/ornithine tr 99.0 2.3E-09 5.8E-14 76.6 8.3 71 262-332 178-258 (325)
239 cd01859 MJ1464 MJ1464. This f 99.0 1.7E-09 4.4E-14 77.3 7.2 90 232-328 8-97 (156)
240 cd01856 YlqF YlqF. Proteins o 99.0 2.7E-09 6.8E-14 76.2 8.1 93 229-330 12-104 (171)
241 pfam03029 ATP_bind_1 Conserved 99.0 1.7E-09 4.4E-14 77.3 6.4 158 164-326 1-232 (234)
242 pfam08477 Miro Miro-like prote 98.9 5.9E-10 1.5E-14 80.2 3.8 113 162-282 2-118 (118)
243 COG2229 Predicted GTPase [Gene 98.9 3.7E-09 9.5E-14 75.3 7.8 152 160-325 11-176 (187)
244 cd04167 Snu114p Snu114p subfam 98.9 6.6E-09 1.7E-13 73.8 8.9 149 161-326 2-210 (213)
245 KOG0098 consensus 98.9 2.1E-09 5.3E-14 76.9 6.2 152 162-329 9-170 (216)
246 KOG1954 consensus 98.9 1.4E-09 3.5E-14 77.9 4.9 131 162-297 61-237 (532)
247 KOG0072 consensus 98.9 7.5E-09 1.9E-13 73.5 8.5 149 163-329 22-181 (182)
248 cd04104 p47_IIGP_like p47 (47- 98.9 6.8E-09 1.7E-13 73.7 8.1 157 161-332 3-189 (197)
249 TIGR02034 CysN sulfate adenyly 98.9 4.9E-09 1.2E-13 74.6 7.0 98 203-317 77-189 (411)
250 TIGR00750 lao LAO/AO transport 98.9 1.3E-08 3.2E-13 72.1 9.0 162 162-331 41-272 (333)
251 KOG0080 consensus 98.9 1.6E-09 4.1E-14 77.5 4.1 150 162-330 14-177 (209)
252 KOG1424 consensus 98.9 3.4E-10 8.7E-15 81.6 0.6 59 159-220 314-373 (562)
253 PRK10218 GTP-binding protein; 98.9 4E-09 1E-13 75.1 6.1 152 159-328 5-196 (607)
254 TIGR03596 GTPase_YlqF ribosome 98.9 3.8E-09 9.7E-14 75.3 5.9 93 229-330 14-106 (276)
255 PRK13796 GTP-binding protein Y 98.9 3.5E-10 8.9E-15 81.6 0.4 55 160-218 163-224 (367)
256 cd01885 EF2 EF2 (for archaea a 98.9 1E-08 2.6E-13 72.7 7.8 149 161-326 2-219 (222)
257 TIGR03597 GTPase_YqeH ribosome 98.9 2.8E-10 7.1E-15 82.2 -0.2 55 160-218 155-216 (360)
258 PRK13351 elongation factor G; 98.9 2.9E-08 7.4E-13 69.9 9.9 110 159-285 8-139 (687)
259 COG1703 ArgK Putative periplas 98.9 6.2E-09 1.6E-13 74.0 6.4 64 268-331 186-258 (323)
260 pfam04548 AIG1 AIG1 family. Ar 98.8 1.6E-08 4E-13 71.6 8.0 159 162-329 3-176 (200)
261 COG0481 LepA Membrane GTPase L 98.8 1.2E-08 3.1E-13 72.2 7.3 156 159-328 9-187 (603)
262 KOG1532 consensus 98.8 2.9E-08 7.3E-13 69.9 8.8 164 162-330 22-267 (366)
263 KOG0394 consensus 98.8 6.9E-09 1.8E-13 73.7 5.4 157 161-330 11-181 (210)
264 KOG0093 consensus 98.8 2.5E-08 6.3E-13 70.3 7.6 171 136-332 4-188 (193)
265 PRK05124 cysN sulfate adenylyl 98.8 2.8E-08 7.2E-13 70.0 7.7 144 160-319 28-217 (475)
266 cd01849 YlqF_related_GTPase Yl 98.8 2.2E-08 5.6E-13 70.7 7.0 88 238-330 1-88 (155)
267 KOG0074 consensus 98.8 3.4E-09 8.6E-14 75.6 2.8 148 162-326 20-178 (185)
268 PRK09563 rbgA ribosomal biogen 98.8 3.4E-08 8.7E-13 69.5 7.9 92 229-329 17-108 (282)
269 PRK12740 elongation factor G; 98.8 5.1E-08 1.3E-12 68.4 8.4 102 167-285 3-126 (670)
270 cd01858 NGP_1 NGP-1. Autoanti 98.7 2.7E-08 6.8E-13 70.1 6.7 95 229-327 1-95 (157)
271 PRK05506 bifunctional sulfate 98.7 3.8E-08 9.6E-13 69.2 7.5 143 161-320 9-197 (613)
272 COG4917 EutP Ethanolamine util 98.7 2.7E-08 6.8E-13 70.2 6.6 138 161-324 3-143 (148)
273 KOG0091 consensus 98.7 4.1E-08 1E-12 69.0 7.4 150 164-332 13-178 (213)
274 KOG0095 consensus 98.7 5E-08 1.3E-12 68.5 7.7 158 155-330 3-172 (213)
275 KOG0461 consensus 98.7 2.3E-08 6E-13 70.5 5.8 154 160-331 8-197 (522)
276 pfam04670 Gtr1_RagA Gtr1/RagA 98.7 5.3E-08 1.4E-12 68.3 7.1 127 162-297 2-137 (230)
277 cd04102 RabL3 RabL3 (Rab-like3 98.7 1.3E-08 3.4E-13 72.0 3.7 155 162-327 3-200 (202)
278 KOG0077 consensus 98.7 9.5E-09 2.4E-13 72.8 3.0 154 159-325 20-191 (193)
279 KOG2486 consensus 98.7 1.1E-08 2.7E-13 72.5 2.5 153 160-325 137-314 (320)
280 PRK10463 hydrogenase nickel in 98.6 3.8E-08 9.7E-13 69.2 5.0 59 267-325 226-287 (290)
281 PRK12739 elongation factor G; 98.6 1.7E-07 4.3E-12 65.3 7.9 110 159-285 10-141 (693)
282 KOG0458 consensus 98.6 1E-07 2.7E-12 66.5 6.8 147 158-318 176-373 (603)
283 KOG0088 consensus 98.6 8.2E-08 2.1E-12 67.2 6.2 155 162-332 16-180 (218)
284 KOG2484 consensus 98.6 1.5E-08 3.8E-13 71.7 1.4 136 82-224 145-315 (435)
285 PRK13796 GTP-binding protein Y 98.6 2.4E-07 6.1E-12 64.4 7.3 86 231-324 65-158 (367)
286 KOG0079 consensus 98.6 8.5E-08 2.2E-12 67.1 4.8 155 160-330 9-172 (198)
287 pfam05049 IIGP Interferon-indu 98.6 6.3E-07 1.6E-11 61.8 9.2 158 160-331 36-222 (375)
288 KOG2423 consensus 98.5 2.4E-08 6E-13 70.5 1.0 66 152-221 301-367 (572)
289 cd01852 AIG1 AIG1 (avrRpt2-ind 98.5 1.2E-06 3.2E-11 60.0 9.7 161 162-329 3-186 (196)
290 TIGR03597 GTPase_YqeH ribosome 98.5 5E-07 1.3E-11 62.4 7.5 87 231-325 57-151 (360)
291 KOG0083 consensus 98.5 3.6E-07 9.1E-12 63.3 6.6 149 164-330 2-163 (192)
292 COG2895 CysN GTPases - Sulfate 98.5 5.1E-07 1.3E-11 62.4 7.0 98 203-317 83-193 (431)
293 KOG1144 consensus 98.5 4.8E-07 1.2E-11 62.5 6.7 152 162-330 478-690 (1064)
294 PRK00007 elongation factor G; 98.5 1.3E-06 3.4E-11 59.8 8.7 110 159-285 10-142 (693)
295 KOG0081 consensus 98.5 3.8E-06 9.6E-11 57.1 11.0 150 165-330 15-184 (219)
296 cd01853 Toc34_like Toc34-like 98.5 8.7E-08 2.2E-12 67.0 2.6 125 158-285 30-163 (249)
297 cd01855 YqeH YqeH. YqeH is an 98.4 2.4E-07 6.1E-12 64.4 4.6 89 230-326 27-124 (190)
298 COG5258 GTPBP1 GTPase [General 98.4 3.9E-06 9.8E-11 57.0 10.3 157 160-329 118-340 (527)
299 TIGR00483 EF-1_alpha translati 98.4 4.1E-07 1E-11 62.9 4.7 146 157-318 5-203 (445)
300 COG0480 FusA Translation elong 98.4 1.7E-06 4.3E-11 59.2 7.4 128 156-301 7-157 (697)
301 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.8E-06 4.5E-11 59.1 6.2 80 229-313 4-83 (141)
302 KOG2485 consensus 98.3 3.9E-07 1E-11 63.1 2.9 155 63-224 26-214 (335)
303 KOG0466 consensus 98.3 1.1E-05 2.9E-10 54.2 9.8 57 271-327 179-241 (466)
304 COG1217 TypA Predicted membran 98.2 7.4E-06 1.9E-10 55.3 8.5 151 159-328 5-196 (603)
305 TIGR01394 TypA_BipA GTP-bindin 98.2 7.8E-07 2E-11 61.3 3.1 149 162-328 4-203 (609)
306 PRK00098 ribosome-associated G 98.2 1.2E-05 3.1E-10 54.0 9.0 53 162-218 167-227 (298)
307 COG0378 HypB Ni2+-binding GTPa 98.2 3.5E-06 8.9E-11 57.3 6.1 76 239-326 120-200 (202)
308 PRK12289 ribosome-associated G 98.2 1.6E-05 4E-10 53.3 8.7 52 163-217 175-234 (351)
309 TIGR00487 IF-2 translation ini 98.2 1.1E-05 2.8E-10 54.3 7.8 145 160-323 91-250 (594)
310 KOG1143 consensus 98.1 1.6E-05 4.1E-10 53.3 8.4 144 162-322 170-383 (591)
311 smart00053 DYNc Dynamin, GTPas 98.1 1.6E-06 4E-11 59.4 3.1 77 207-288 126-209 (240)
312 PRK12288 ribosome-associated G 98.1 2E-05 5.2E-10 52.7 8.8 54 270-323 151-206 (344)
313 cd01882 BMS1 Bms1. Bms1 is an 98.1 1.2E-05 3.1E-10 54.0 7.3 128 162-311 42-180 (225)
314 KOG0448 consensus 98.1 5.5E-06 1.4E-10 56.1 5.5 140 160-310 110-309 (749)
315 KOG1707 consensus 98.1 6.5E-07 1.7E-11 61.7 0.1 157 143-324 416-580 (625)
316 KOG0463 consensus 98.1 4.7E-05 1.2E-09 50.5 9.5 56 270-326 272-356 (641)
317 KOG3883 consensus 98.0 1.1E-05 2.9E-10 54.2 5.9 161 162-334 12-182 (198)
318 KOG2484 consensus 98.0 1.2E-05 2.9E-10 54.2 5.3 81 228-312 138-218 (435)
319 pfam05783 DLIC Dynein light in 98.0 2.5E-05 6.3E-10 52.2 6.8 58 272-329 216-285 (490)
320 COG1161 Predicted GTPases [Gen 98.0 1.2E-05 3.1E-10 54.0 4.7 101 209-323 13-113 (322)
321 cd01854 YjeQ_engC YjeQ/EngC. 97.9 6.8E-05 1.7E-09 49.5 8.5 54 162-218 164-225 (287)
322 TIGR03348 VI_IcmF type VI secr 97.9 3E-05 7.6E-10 51.7 6.2 119 162-286 114-258 (1169)
323 KOG0086 consensus 97.9 2.4E-05 6.2E-10 52.2 5.7 144 161-324 11-168 (214)
324 PRK07560 elongation factor EF- 97.9 1.1E-05 2.8E-10 54.3 3.9 109 159-284 20-152 (730)
325 KOG1424 consensus 97.9 2.1E-05 5.4E-10 52.6 4.9 79 227-311 165-244 (562)
326 KOG4252 consensus 97.9 3.2E-05 8.3E-10 51.4 5.8 152 162-331 23-185 (246)
327 pfam00735 Septin Septin. Membe 97.9 2.7E-05 7E-10 51.9 5.4 130 162-299 7-169 (280)
328 KOG0393 consensus 97.8 0.00011 2.9E-09 48.2 7.7 152 161-327 6-179 (198)
329 TIGR00650 MG442 GTP-binding co 97.8 4.4E-06 1.1E-10 56.7 0.4 53 165-220 1-76 (123)
330 KOG1673 consensus 97.8 0.00014 3.5E-09 47.6 8.0 153 161-330 22-189 (205)
331 cd01850 CDC_Septin CDC/Septin. 97.8 0.0001 2.6E-09 48.4 7.3 130 162-299 7-171 (276)
332 COG0050 TufB GTPases - transla 97.8 6.2E-05 1.6E-09 49.7 5.8 150 157-326 10-200 (394)
333 KOG0097 consensus 97.8 9.1E-05 2.3E-09 48.7 6.5 146 164-328 16-174 (215)
334 pfam09547 Spore_IV_A Stage IV 97.7 0.00019 4.7E-09 46.8 7.9 160 162-328 20-235 (492)
335 PRK05703 flhF flagellar biosyn 97.7 3.2E-05 8.1E-10 51.5 3.8 137 162-318 213-387 (412)
336 COG1162 Predicted GTPases [Gen 97.7 0.00025 6.4E-09 46.1 8.4 53 162-217 167-227 (301)
337 TIGR02836 spore_IV_A stage IV 97.7 0.00033 8.4E-09 45.3 8.7 162 162-330 20-237 (492)
338 KOG0468 consensus 97.7 0.00017 4.2E-09 47.1 7.0 113 159-284 128-262 (971)
339 PRK12288 ribosome-associated G 97.6 3.7E-05 9.5E-10 51.1 3.1 54 162-218 210-271 (344)
340 PRK01889 ribosome-associated G 97.6 0.00055 1.4E-08 44.0 8.7 104 161-267 196-326 (353)
341 PRK00098 ribosome-associated G 97.6 4.5E-05 1.1E-09 50.6 2.9 55 270-324 110-164 (298)
342 pfam02492 cobW CobW/HypB/UreG, 97.6 9E-05 2.3E-09 48.8 4.1 57 238-302 111-169 (174)
343 cd04178 Nucleostemin_like Nucl 97.5 0.00021 5.3E-09 46.5 5.4 60 238-302 1-61 (172)
344 COG4108 PrfC Peptide chain rel 97.5 0.00082 2.1E-08 42.9 8.1 52 162-215 15-90 (528)
345 TIGR00073 hypB hydrogenase acc 97.4 8.9E-05 2.3E-09 48.8 2.6 60 267-326 160-222 (225)
346 KOG3886 consensus 97.4 0.0003 7.6E-09 45.6 5.3 122 161-292 6-137 (295)
347 PRK01889 ribosome-associated G 97.4 8.9E-05 2.3E-09 48.8 2.6 53 270-324 140-193 (353)
348 KOG1707 consensus 97.4 0.00034 8.6E-09 45.3 5.3 150 162-325 12-173 (625)
349 pfam06858 NOG1 Nucleolar GTP-b 97.4 0.00011 2.7E-09 48.3 2.4 50 228-282 7-58 (58)
350 COG1162 Predicted GTPases [Gen 97.3 0.00015 3.8E-09 47.4 2.9 82 240-325 83-165 (301)
351 KOG2423 consensus 97.3 0.00068 1.7E-08 43.4 5.8 90 231-325 208-298 (572)
352 COG5192 BMS1 GTP-binding prote 97.2 0.00092 2.3E-08 42.6 6.1 20 162-181 72-91 (1077)
353 PRK13546 teichoic acids export 97.2 0.0013 3.4E-08 41.6 6.7 54 152-216 43-96 (264)
354 PRK06995 flhF flagellar biosyn 97.2 0.00047 1.2E-08 44.4 4.3 136 162-317 179-352 (404)
355 KOG0082 consensus 97.2 0.0011 2.8E-08 42.2 5.9 131 193-330 178-347 (354)
356 KOG0459 consensus 97.2 0.0021 5.3E-08 40.5 7.3 188 109-320 33-279 (501)
357 pfam03193 DUF258 Protein of un 97.2 0.00014 3.4E-09 47.7 1.2 54 162-218 38-99 (161)
358 TIGR00991 3a0901s02IAP34 GTP-b 97.1 0.00022 5.6E-09 46.4 2.1 121 162-286 42-169 (328)
359 PRK11537 putative GTP-binding 97.1 0.00065 1.6E-08 43.6 4.5 19 163-181 8-26 (317)
360 COG5019 CDC3 Septin family pro 97.1 0.0011 2.9E-08 42.1 5.5 159 127-305 3-199 (373)
361 KOG0465 consensus 97.1 0.00078 2E-08 43.1 4.6 112 157-285 37-170 (721)
362 PRK09866 hypothetical protein; 97.1 0.00014 3.6E-09 47.6 0.7 99 207-312 231-338 (742)
363 cd00066 G-alpha G protein alph 97.1 0.0021 5.4E-08 40.4 6.5 130 194-330 145-314 (317)
364 pfam00448 SRP54 SRP54-type pro 97.0 0.00045 1.1E-08 44.5 2.8 143 162-321 4-185 (196)
365 TIGR01271 CFTR_protein cystic 97.0 0.0062 1.6E-07 37.6 8.5 186 71-293 1225-1480(1534)
366 KOG0447 consensus 97.0 0.0012 2.9E-08 42.0 4.6 76 206-286 412-494 (980)
367 KOG1547 consensus 97.0 0.0012 3.1E-08 41.9 4.6 138 162-307 49-223 (336)
368 pfam00503 G-alpha G-protein al 97.0 0.003 7.8E-08 39.5 6.6 130 194-330 174-344 (350)
369 COG1134 TagH ABC-type polysacc 97.0 0.0045 1.1E-07 38.5 7.3 52 151-213 45-96 (249)
370 cd03114 ArgK-like The function 96.9 0.00022 5.7E-09 46.4 0.5 20 162-181 2-21 (148)
371 COG0523 Putative GTPases (G3E 96.9 0.0018 4.6E-08 40.9 5.1 75 238-319 118-193 (323)
372 cd03265 ABC_DrrA DrrA is the A 96.9 0.0034 8.6E-08 39.2 6.1 37 160-207 27-63 (220)
373 KOG3905 consensus 96.8 0.019 4.9E-07 34.6 9.8 57 272-328 223-291 (473)
374 COG3523 IcmF Type VI protein s 96.8 0.0068 1.7E-07 37.4 7.5 151 164-315 130-302 (1188)
375 COG1131 CcmA ABC-type multidru 96.8 0.01 2.6E-07 36.3 8.1 151 151-318 23-203 (293)
376 KOG0460 consensus 96.8 0.004 1E-07 38.8 6.0 138 156-314 51-225 (449)
377 cd03298 ABC_ThiQ_thiamine_tran 96.8 0.0019 4.9E-08 40.7 4.3 31 152-182 17-47 (211)
378 PRK12289 ribosome-associated G 96.8 0.00056 1.4E-08 43.9 1.6 83 238-325 90-172 (351)
379 PRK11248 tauB taurine transpor 96.8 0.0036 9.2E-08 39.0 5.6 31 152-182 20-50 (255)
380 cd03264 ABC_drug_resistance_li 96.8 0.014 3.5E-07 35.5 8.5 36 161-207 27-62 (211)
381 PRK11144 modC molybdate transp 96.7 0.01 2.6E-07 36.3 7.7 142 151-308 16-186 (352)
382 PRK13545 tagH teichoic acids e 96.7 0.017 4.4E-07 34.9 8.8 54 152-216 43-96 (549)
383 TIGR00503 prfC peptide chain r 96.7 0.0043 1.1E-07 38.5 5.6 78 161-247 13-114 (530)
384 cd03267 ABC_NatA_like Similar 96.6 0.011 2.7E-07 36.2 7.3 45 150-205 38-82 (236)
385 KOG1533 consensus 96.6 0.00093 2.4E-08 42.6 1.8 122 162-287 5-179 (290)
386 KOG0467 consensus 96.6 0.018 4.6E-07 34.8 8.3 110 160-282 10-135 (887)
387 cd03300 ABC_PotA_N PotA is an 96.6 0.0045 1.1E-07 38.5 5.1 144 152-308 19-188 (232)
388 cd03299 ABC_ModC_like Archeal 96.5 0.0051 1.3E-07 38.1 4.9 48 150-208 16-63 (235)
389 PRK12727 flagellar biosynthesi 96.5 0.0045 1.1E-07 38.4 4.7 140 162-318 351-524 (557)
390 KOG2485 consensus 96.5 0.0043 1.1E-07 38.6 4.4 104 208-329 24-133 (335)
391 cd01854 YjeQ_engC YjeQ/EngC. 96.5 0.0011 2.8E-08 42.2 1.3 54 270-324 108-161 (287)
392 PRK10584 putative ABC transpor 96.4 0.003 7.5E-08 39.6 3.3 31 152-182 29-59 (228)
393 cd03259 ABC_Carb_Solutes_like 96.4 0.0053 1.4E-07 38.0 4.6 45 152-207 19-63 (213)
394 cd03217 ABC_FeS_Assembly ABC-t 96.4 0.0056 1.4E-07 37.9 4.7 139 152-308 19-161 (200)
395 TIGR03410 urea_trans_UrtE urea 96.4 0.0072 1.8E-07 37.2 5.1 39 160-209 27-65 (230)
396 cd03266 ABC_NatA_sodium_export 96.3 0.015 3.7E-07 35.3 6.5 44 152-206 24-67 (218)
397 KOG0054 consensus 96.3 0.047 1.2E-06 32.3 9.0 31 152-182 540-570 (1381)
398 PRK11300 livG leucine/isoleuci 96.3 0.011 2.8E-07 36.1 5.7 42 267-308 166-211 (255)
399 cd03269 ABC_putative_ATPase Th 96.3 0.01 2.6E-07 36.3 5.5 43 154-207 21-63 (210)
400 smart00275 G_alpha G protein a 96.3 0.032 8.1E-07 33.3 7.9 130 193-329 167-336 (342)
401 cd03268 ABC_BcrA_bacitracin_re 96.3 0.018 4.5E-07 34.9 6.5 145 154-315 21-189 (208)
402 COG4148 ModC ABC-type molybdat 96.3 0.013 3.4E-07 35.6 5.9 141 162-320 27-194 (352)
403 cd03293 ABC_NrtD_SsuB_transpor 96.2 0.0057 1.5E-07 37.8 3.9 147 152-308 23-189 (220)
404 KOG1249 consensus 96.2 0.00081 2.1E-08 42.9 -0.4 46 152-197 206-263 (572)
405 PRK11124 artP arginine transpo 96.2 0.016 4E-07 35.1 6.1 52 151-213 20-71 (242)
406 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.2 0.019 4.8E-07 34.7 6.4 48 150-208 39-86 (224)
407 PRK11000 maltose/maltodextrin 96.2 0.011 2.9E-07 36.0 5.1 31 152-182 22-52 (369)
408 PRK11629 lolD lipoprotein tran 96.1 0.011 2.9E-07 36.0 5.1 46 151-207 27-72 (233)
409 cd03214 ABC_Iron-Siderophores_ 96.1 0.027 6.8E-07 33.8 6.9 136 150-308 16-155 (180)
410 cd03258 ABC_MetN_methionine_tr 96.1 0.0061 1.6E-07 37.6 3.6 41 268-308 154-198 (233)
411 PRK10762 D-ribose transporter 96.1 0.024 6.2E-07 34.0 6.6 31 152-182 271-301 (501)
412 PRK10751 molybdopterin-guanine 96.1 0.00084 2.2E-08 42.9 -1.0 48 160-216 3-50 (170)
413 cd03256 ABC_PhnC_transporter A 96.1 0.0056 1.4E-07 37.9 3.3 31 152-182 20-50 (241)
414 cd03297 ABC_ModC_molybdenum_tr 96.1 0.018 4.7E-07 34.7 5.8 21 162-182 26-46 (214)
415 cd03233 ABC_PDR_domain1 The pl 96.0 0.009 2.3E-07 36.6 4.1 31 152-182 26-56 (202)
416 PRK12723 flagellar biosynthesi 96.0 0.0036 9.2E-08 39.0 2.0 137 162-315 177-351 (388)
417 PRK13652 cbiO cobalt transport 96.0 0.0086 2.2E-07 36.7 3.9 31 152-182 23-53 (277)
418 cd03218 ABC_YhbG The ABC trans 96.0 0.0075 1.9E-07 37.1 3.6 45 153-208 20-64 (232)
419 cd03116 MobB Molybdenum is an 96.0 0.0012 3E-08 42.0 -0.6 46 162-216 4-49 (159)
420 cd03301 ABC_MalK_N The N-termi 96.0 0.016 4E-07 35.2 5.1 143 152-308 19-188 (213)
421 PRK09452 potA putrescine/sperm 96.0 0.015 3.8E-07 35.3 5.0 46 151-207 35-80 (378)
422 PRK13648 cbiO cobalt transport 95.9 0.025 6.4E-07 33.9 5.9 33 150-182 26-58 (269)
423 COG4586 ABC-type uncharacteriz 95.9 0.087 2.2E-06 30.6 8.6 67 149-215 40-115 (325)
424 PRK09544 znuC high-affinity zi 95.8 0.018 4.7E-07 34.7 5.0 142 152-308 23-178 (251)
425 PRK10771 thiQ thiamine transpo 95.8 0.055 1.4E-06 31.9 7.4 46 151-207 17-62 (233)
426 TIGR00484 EF-G translation elo 95.8 0.021 5.3E-07 34.4 5.2 129 155-301 6-164 (705)
427 KOG2655 consensus 95.8 0.017 4.4E-07 34.9 4.8 129 162-300 24-187 (366)
428 PRK13632 cbiO cobalt transport 95.8 0.03 7.6E-07 33.5 6.0 33 150-182 27-59 (273)
429 PRK11701 phnK phosphonates tra 95.8 0.024 6.2E-07 34.0 5.5 31 152-182 25-55 (258)
430 PRK13642 cbiO cobalt transport 95.8 0.024 6.2E-07 34.0 5.5 33 150-182 24-56 (277)
431 TIGR02769 nickel_nikE nickel i 95.8 0.017 4.3E-07 35.0 4.6 150 152-308 31-209 (267)
432 cd03296 ABC_CysA_sulfate_impor 95.8 0.035 8.9E-07 33.1 6.2 47 151-208 20-66 (239)
433 PRK10253 iron-enterobactin tra 95.8 0.026 6.6E-07 33.9 5.5 46 151-207 25-70 (265)
434 cd03226 ABC_cobalt_CbiO_domain 95.7 0.014 3.5E-07 35.5 3.9 47 150-207 17-63 (205)
435 PRK10247 putative ABC transpor 95.7 0.033 8.5E-07 33.2 5.9 47 151-208 25-71 (225)
436 PRK11614 livF leucine/isoleuci 95.7 0.032 8.1E-07 33.3 5.7 46 152-208 24-69 (237)
437 PRK13635 cbiO cobalt transport 95.7 0.018 4.6E-07 34.8 4.5 32 151-182 25-56 (279)
438 KOG1534 consensus 95.7 0.0047 1.2E-07 38.3 1.5 121 163-286 7-179 (273)
439 PRK13650 cbiO cobalt transport 95.7 0.019 4.8E-07 34.7 4.5 33 150-182 21-53 (276)
440 PRK13646 cbiO cobalt transport 95.6 0.017 4.3E-07 35.0 4.2 31 151-181 25-55 (286)
441 PRK13537 lipooligosaccharide t 95.6 0.037 9.4E-07 32.9 5.9 22 161-182 33-54 (304)
442 cd03230 ABC_DR_subfamily_A Thi 95.6 0.048 1.2E-06 32.2 6.5 46 152-208 19-64 (173)
443 TIGR02858 spore_III_AA stage I 95.6 0.04 1E-06 32.7 6.1 23 160-182 124-146 (282)
444 PRK13536 nodulation factor exp 95.6 0.038 9.7E-07 32.8 5.9 23 160-182 34-56 (306)
445 PRK10070 glycine betaine trans 95.6 0.014 3.5E-07 35.5 3.6 32 150-181 45-76 (400)
446 cd03235 ABC_Metallic_Cations A 95.6 0.042 1.1E-06 32.6 6.0 33 151-183 17-49 (213)
447 PRK11247 ssuB aliphatic sulfon 95.6 0.017 4.4E-07 34.9 4.0 138 160-308 39-191 (257)
448 PRK11831 putative ABC transpor 95.6 0.044 1.1E-06 32.4 6.1 44 152-206 27-70 (269)
449 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.6 0.078 2E-06 30.9 7.3 47 150-207 21-67 (218)
450 KOG2749 consensus 95.5 0.0086 2.2E-07 36.7 2.4 42 160-201 104-146 (415)
451 cd03224 ABC_TM1139_LivF_branch 95.5 0.036 9.2E-07 33.0 5.5 45 152-207 19-63 (222)
452 cd03263 ABC_subfamily_A The AB 95.5 0.13 3.2E-06 29.7 8.2 32 151-182 20-51 (220)
453 cd03219 ABC_Mj1267_LivG_branch 95.5 0.05 1.3E-06 32.1 6.1 46 152-208 19-64 (236)
454 cd03294 ABC_Pro_Gly_Bertaine T 95.5 0.02 5.1E-07 34.5 4.0 147 144-308 35-218 (269)
455 PRK10895 putative ABC transpor 95.4 0.056 1.4E-06 31.8 6.2 46 152-208 22-67 (241)
456 cd03295 ABC_OpuCA_Osmoprotecti 95.4 0.038 9.7E-07 32.8 5.3 143 150-308 18-193 (242)
457 TIGR01277 thiQ thiamine ABC tr 95.4 0.0045 1.1E-07 38.5 0.5 38 160-208 25-62 (213)
458 PRK11153 metN DL-methionine tr 95.4 0.018 4.7E-07 34.7 3.6 31 152-182 24-54 (343)
459 cd03237 ABC_RNaseL_inhibitor_d 95.4 0.074 1.9E-06 31.1 6.7 35 162-207 28-62 (246)
460 PRK10575 iron-hydroxamate tran 95.3 0.057 1.4E-06 31.8 6.0 31 152-182 30-60 (265)
461 COG1116 TauB ABC-type nitrate/ 95.3 0.078 2E-06 30.9 6.7 21 161-181 31-51 (248)
462 COG1419 FlhF Flagellar GTP-bin 95.3 0.15 3.8E-06 29.2 8.1 20 161-180 205-224 (407)
463 TIGR03375 type_I_sec_LssB type 95.3 0.18 4.5E-06 28.8 8.5 47 152-209 484-530 (694)
464 smart00010 small_GTPase Small 95.3 0.013 3.4E-07 35.6 2.7 48 271-319 66-118 (124)
465 cd03112 CobW_like The function 95.3 0.0027 6.9E-08 39.8 -0.8 20 164-183 5-24 (158)
466 PRK13649 cbiO cobalt transport 95.3 0.03 7.6E-07 33.5 4.5 32 151-182 25-56 (280)
467 COG1120 FepC ABC-type cobalami 95.3 0.12 2.9E-06 29.9 7.4 23 160-182 29-51 (258)
468 COG3854 SpoIIIAA ncharacterize 95.3 0.073 1.9E-06 31.1 6.4 119 161-320 139-260 (308)
469 PRK13638 cbiO cobalt transport 95.3 0.044 1.1E-06 32.4 5.2 47 150-207 18-64 (271)
470 cd03225 ABC_cobalt_CbiO_domain 95.2 0.056 1.4E-06 31.8 5.8 33 150-182 18-50 (211)
471 PRK10851 sulfate/thiosulfate t 95.2 0.049 1.2E-06 32.2 5.4 31 152-182 21-51 (352)
472 PRK12724 flagellar biosynthesi 95.2 0.044 1.1E-06 32.4 5.1 140 162-317 226-400 (432)
473 cd03261 ABC_Org_Solvent_Resist 95.2 0.062 1.6E-06 31.5 5.9 140 152-308 19-194 (235)
474 PRK09700 D-allose transporter 95.2 0.12 3.2E-06 29.7 7.4 34 150-183 280-313 (510)
475 COG1136 SalX ABC-type antimicr 95.2 0.089 2.3E-06 30.6 6.6 30 152-181 24-53 (226)
476 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.087 2.2E-06 30.7 6.5 31 151-181 22-52 (254)
477 PRK13636 cbiO cobalt transport 95.2 0.061 1.6E-06 31.6 5.7 32 151-182 24-55 (285)
478 PRK10908 cell division protein 95.1 0.12 2.9E-06 29.9 7.1 33 150-182 19-51 (222)
479 PRK11607 potG putrescine trans 95.1 0.04 1E-06 32.7 4.7 44 153-207 39-82 (377)
480 COG0488 Uup ATPase components 95.1 0.17 4.3E-06 28.9 7.9 25 158-182 347-371 (530)
481 TIGR03608 L_ocin_972_ABC putat 95.1 0.019 4.9E-07 34.6 3.0 30 152-181 17-46 (206)
482 PRK11650 ugpC glycerol-3-phosp 95.1 0.053 1.4E-06 31.9 5.2 31 152-182 23-53 (358)
483 cd03291 ABCC_CFTR1 The CFTR su 95.0 0.28 7.1E-06 27.6 8.9 47 149-206 53-99 (282)
484 cd03245 ABCC_bacteriocin_expor 95.0 0.28 7.1E-06 27.6 9.2 47 149-206 20-66 (220)
485 TIGR03263 guanyl_kin guanylate 95.0 0.0041 1E-07 38.7 -0.6 41 162-202 4-45 (180)
486 TIGR03499 FlhF flagellar biosy 95.0 0.0094 2.4E-07 36.5 1.2 19 162-180 197-215 (282)
487 cd03257 ABC_NikE_OppD_transpor 95.0 0.092 2.3E-06 30.5 6.2 47 151-208 23-69 (228)
488 TIGR03522 GldA_ABC_ATP gliding 95.0 0.25 6.4E-06 27.9 8.5 23 160-182 29-51 (301)
489 PRK11432 fbpC ferric transport 95.0 0.043 1.1E-06 32.5 4.5 45 152-207 25-69 (351)
490 KOG3887 consensus 95.0 0.096 2.5E-06 30.4 6.3 123 162-294 30-158 (347)
491 PRK13640 cbiO cobalt transport 94.9 0.048 1.2E-06 32.2 4.7 32 151-182 26-57 (283)
492 COG3640 CooC CO dehydrogenase 94.9 0.11 2.9E-06 30.0 6.5 84 202-304 130-213 (255)
493 PTZ00265 multidrug resistance 94.9 0.076 1.9E-06 31.0 5.6 32 150-181 1186-1217(1467)
494 PRK11174 cysteine/glutathione 94.9 0.3 7.7E-06 27.4 8.6 50 151-212 368-417 (588)
495 PRK10982 galactose/methyl gala 94.9 0.18 4.6E-06 28.7 7.4 32 151-182 266-297 (491)
496 TIGR00993 3a0901s04IAP86 chlor 94.8 0.024 6.1E-07 34.1 2.9 122 118-250 90-223 (772)
497 TIGR03265 PhnT2 putative 2-ami 94.8 0.059 1.5E-06 31.7 4.9 46 152-208 23-68 (353)
498 PRK13634 cbiO cobalt transport 94.8 0.068 1.7E-06 31.3 5.1 32 151-182 12-43 (276)
499 PRK10535 macrolide transporter 94.8 0.034 8.6E-07 33.1 3.6 17 162-178 37-53 (648)
500 KOG0446 consensus 94.8 0.0071 1.8E-07 37.2 0.1 90 159-249 29-181 (657)
No 1
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=100.00 E-value=0 Score=983.91 Aligned_cols=283 Identities=54% Similarity=0.978 Sum_probs=278.3
Q ss_pred EEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC-CCCCCHHHHCCCCEECCCCCCCCCCCCCCC
Q ss_conf 1149999998369998414525667779999988888986529999668-987215541465420567866542213354
Q gi|254780648|r 3 FLDEAKVYIRSGDGGAGGISFRREKFIEFGGPDGGSGGRGGDVWIQATS-NLNTLIDFRYQQHFKAQHGEKGMKRNRSGA 81 (335)
Q Consensus 3 f~D~~~i~~~~G~GG~G~~sf~r~k~~~~g~p~gg~GG~Gg~v~~~~~~-~~~~l~~~~~~~~~~A~~G~~G~~~~~~G~ 81 (335)
|||+++|+|+||+|||||||||||||+|+|||||||||+||||||+||+ +++||++|||++||+|+||++|++++|+|+
T Consensus 1 F~D~~~I~v~aG~GG~G~vSFRREK~vP~GGPdGGdGG~GG~Vif~a~~l~~~tL~~~~~~~~~~A~~G~~G~~~~~~G~ 80 (296)
T TIGR02729 1 FIDEVKIEVKAGNGGNGCVSFRREKFVPKGGPDGGDGGRGGSVIFVADSLNLNTLLDFRYKKHLKAENGENGMGKNRHGK 80 (296)
T ss_pred CCEEEEEEEEECCCCCCCEEEEHEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf 90389999972788885401100001568687888887053489980335731033421402898036898885457788
Q ss_pred CCCCEEEECCCCCEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEC
Q ss_conf 44611998283323573258826645612684555226777763443326766767610136775302689999976301
Q gi|254780648|r 82 KGEDVVLTVPVGTQVFEEDGISLICDLDQEGQRIILAPGGNGGFGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKLIAD 161 (335)
Q Consensus 82 ~g~d~~i~vP~GT~v~~~~~~~~~~dl~~~~~~~~~~~GG~GG~GN~~f~s~~n~~P~~~~~G~~G~~~~~~lelk~iaD 161 (335)
+|+|++|+||+||+|+|++|+++|+||++++|+++|||||+||+||+|||||+||||++||+|++||+++|.||||+|||
T Consensus 81 ~G~Dl~i~VP~GT~v~d~~~g~~i~Dl~~~g~~~~~akGG~GG~GN~~Fkts~n~AP~~ae~G~~GE~r~~~LELKllAD 160 (296)
T TIGR02729 81 NGKDLIIKVPVGTVVYDAETGELIADLVEEGQKFVIAKGGKGGLGNAHFKTSTNRAPRFAEPGEPGEEREVRLELKLLAD 160 (296)
T ss_pred CCCEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEE
T ss_conf 87611797587508997789989898617897999986788897776102864468852458898855899997666620
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE----EEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001026632986----8998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK----EFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~----~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|||||+||||||||||+||+|||||||||||||+|+||||++++. +||||||||||||||+|+||||+||||||||
T Consensus 161 VGLvGfPNAGKSTLLs~~S~AkPKiAdYPFTTL~P~LGvv~~~~~~Y~~~fviADIPGLIEGAs~G~GLG~~FLKHIERt 240 (296)
T TIGR02729 161 VGLVGFPNAGKSTLLSAISNAKPKIADYPFTTLEPNLGVVRVDDNKYERSFVIADIPGLIEGASEGKGLGHKFLKHIERT 240 (296)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCHHHHHCCCCCCHHHHHHHHHE
T ss_conf 21035788746888888762788223878745653112898748741688999856861566626887533554575202
Q ss_pred HHHHHHCCCCCC--------CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 788752022221--------101346667899877766750598899997465899
Q gi|254780648|r 238 HVLLHIVSALEE--------NVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVD 285 (335)
Q Consensus 238 ~vLl~VVD~s~~--------d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~ 285 (335)
++|+||||++.. ||+++|++|++||++|+++|++||+|||+||||+++
T Consensus 241 ~~L~hviD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~~~iv~NK~Dl~~ 296 (296)
T TIGR02729 241 RLLLHVIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKPQIIVLNKIDLLD 296 (296)
T ss_pred EEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECCCCC
T ss_conf 66887980687534242898889999999999975087362780799986067789
No 2
>PRK12298 obgE GTPase ObgE; Reviewed
Probab=100.00 E-value=0 Score=898.17 Aligned_cols=332 Identities=47% Similarity=0.823 Sum_probs=324.7
Q ss_pred CCEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEECCCCCCCCCCCCCC
Q ss_conf 92114999999836999841452566777999998888898652999966898721554146542056786654221335
Q gi|254780648|r 1 MKFLDEAKVYIRSGDGGAGGISFRREKFIEFGGPDGGSGGRGGDVWIQATSNLNTLIDFRYQQHFKAQHGEKGMKRNRSG 80 (335)
Q Consensus 1 m~f~D~~~i~~~~G~GG~G~~sf~r~k~~~~g~p~gg~GG~Gg~v~~~~~~~~~~l~~~~~~~~~~A~~G~~G~~~~~~G 80 (335)
|||||+++|+|+||+|||||+|||||||+|+|||||||||+|||||+++|++++||++|+++++|+|+||++|++++++|
T Consensus 1 mkFvD~~~I~v~aG~GG~G~vsFrReK~vp~GGPdGGdGG~GG~V~~~~d~~l~tL~~~~~~~~~~A~~G~~G~~~~~~G 80 (380)
T PRK12298 1 MKFVDEAKIRVEAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGDVYLEADENLNTLIDYRFERHFRAERGENGRGRDCTG 80 (380)
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCEEECCCCCCCCCCCCCC
T ss_conf 96458999999955897853444133367779999988977788999980992745660687679827999998666848
Q ss_pred CCCCCEEEECCCCCEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE
Q ss_conf 44461199828332357325882664561268455522677776344332676676761013677530268999997630
Q gi|254780648|r 81 AKGEDVVLTVPVGTQVFEEDGISLICDLDQEGQRIILAPGGNGGFGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKLIA 160 (335)
Q Consensus 81 ~~g~d~~i~vP~GT~v~~~~~~~~~~dl~~~~~~~~~~~GG~GG~GN~~f~s~~n~~P~~~~~G~~G~~~~~~lelk~ia 160 (335)
++|+|++|+||+||+|++.+++++|+||++++|+++||+||+||+||++|+||+||+|++||+|++||++++.||||+||
T Consensus 81 ~~G~D~~i~VP~GT~V~d~~t~e~i~dl~~~g~~~lva~GG~GG~GN~~Fkss~n~aPr~~~~G~~Ge~~~l~LELKliA 160 (380)
T PRK12298 81 KRGEDLTLKVPVGTRVIDADTGEVIGDLTEHGQRLLVAKGGWHGLGNTRFKSSVNRAPRQKTPGTPGEERELKLELKLLA 160 (380)
T ss_pred CCCCCEEEEECCCCEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEC
T ss_conf 99998799948988788779993999836699589997578787675212465668984446998865899999999751
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEEC-CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 11244216777530354101454012121100000010266329-86899822642124731167751234433333578
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEG-YKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~-~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
||||||+|||||||||++||+|+||||+|||||+.|++|||+.+ +.+|++||+||||||||+|+|||++||||||||++
T Consensus 161 DVGLvG~PNAGKSTll~~iS~AkPKIAdYpFTTL~PnLGvV~~~~~~~fviADIPGLIeGAs~G~GLG~~FLrHieRt~~ 240 (380)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVIADIPGLIEGAAEGAGLGIRFLKHLERCRV 240 (380)
T ss_pred CCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCE
T ss_conf 65146369886108998855589754788753368746799946986699987775557755587728999999875358
Q ss_pred HHHHCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCCC
Q ss_conf 87520222---2110134666789987776675059889999746589988999999999986299--489998887889
Q gi|254780648|r 240 LLHIVSAL---EENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQ--VPFEFSSITGHG 314 (335)
Q Consensus 240 Ll~VVD~s---~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~--~vi~ISA~tg~G 314 (335)
|+||||++ .++|+++|++|++||+.|+++|++||+|||+||+|++++++..+.++++.+..+| ++|+|||++++|
T Consensus 241 LlhviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~kp~iiv~NK~Dl~~~~e~~~~~~~~~~~~~~~~~v~~ISA~tgeG 320 (380)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIVNELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKEIVEALGWEGPVYLISAASGEG 320 (380)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 99999688777519999999999999985976605987999988548997999999999999708888879997876879
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999854523
Q gi|254780648|r 315 IPQILECLHDKIFSIRGE 332 (335)
Q Consensus 315 I~eL~~~I~e~L~~~r~e 332 (335)
+++|+..+++.|.+.+.+
T Consensus 321 ~~~L~~~i~~~l~~~~~~ 338 (380)
T PRK12298 321 TKELCWDLMTFIEENPAE 338 (380)
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 999999999999867243
No 3
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=100.00 E-value=0 Score=891.02 Aligned_cols=330 Identities=54% Similarity=0.912 Sum_probs=318.5
Q ss_pred CCEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEECCCCCCCCCCCCCC
Q ss_conf 92114999999836999841452566777999998888898652999966898721554146542056786654221335
Q gi|254780648|r 1 MKFLDEAKVYIRSGDGGAGGISFRREKFIEFGGPDGGSGGRGGDVWIQATSNLNTLIDFRYQQHFKAQHGEKGMKRNRSG 80 (335)
Q Consensus 1 m~f~D~~~i~~~~G~GG~G~~sf~r~k~~~~g~p~gg~GG~Gg~v~~~~~~~~~~l~~~~~~~~~~A~~G~~G~~~~~~G 80 (335)
|+|+|+++|+|+||+|||||||||||||+|+|||||||||+||||||++|++++||.+|||++||+|+||++|++++|+|
T Consensus 1 m~FvD~~~I~v~aG~GGnG~VSFrREK~vp~GGPdGGdGG~GGsV~~~ad~~l~TL~d~r~~~~f~A~~G~~G~~~~~~G 80 (369)
T COG0536 1 MKFVDEVKIEVKAGDGGNGCVSFRREKFVPKGGPDGGDGGRGGSVIFEADENLNTLIDFRYKKHFKAENGENGMGRNRTG 80 (369)
T ss_pred CCCCEEEEEEEEECCCCCEEEEEEHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHCCCEEEECCCCCCCCCCCCCC
T ss_conf 98524899999954898705898741057668999998887856999980895607664062388866899999878888
Q ss_pred CCCCCEEEECCCCCEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE
Q ss_conf 44461199828332357325882664561268455522677776344332676676761013677530268999997630
Q gi|254780648|r 81 AKGEDVVLTVPVGTQVFEEDGISLICDLDQEGQRIILAPGGNGGFGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKLIA 160 (335)
Q Consensus 81 ~~g~d~~i~vP~GT~v~~~~~~~~~~dl~~~~~~~~~~~GG~GG~GN~~f~s~~n~~P~~~~~G~~G~~~~~~lelk~ia 160 (335)
++|+|++|+||+||+|+|.+|+++|+||++++|++++|+||+||+||+|||||+||+|+++++|++||++++.||||+||
T Consensus 81 ~~G~Dl~i~VP~GT~v~d~~t~e~i~Dl~~~gq~~~~akGG~GG~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~LELKllA 160 (369)
T COG0536 81 AKGKDLVIKVPVGTVVRDEDTGELLADLTEHGQRFLVAKGGRGGLGNAHFKSSVNRAPRFATPGEPGEERDLRLELKLLA 160 (369)
T ss_pred CCCCCEEEECCCCCEEEECCCCEEEHHHCCCCCEEEEECCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEC
T ss_conf 98781589769998898478893853011377199997478887653211686667866578999773678999770000
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEE-CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 1124421677753035410145401212110000001026632-986899822642124731167751234433333578
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKE-GYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~-~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
||||||+||||||||||++|+||||||||||||+.|+||||+. +..+|++|||||||||||+|+|||++||||||||++
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHE
T ss_conf 11412589885798998886068854488653024753079964886079934753235644688763888878886515
Q ss_pred HHHHCCCCCC---CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CCHHHHHHHHHHHHHHCCCCEEE-EECCCCCC
Q ss_conf 8752022221---1013466678998777667505988999974658-99889999999999862994899-98887889
Q gi|254780648|r 240 LLHIVSALEE---NVQAAYQCILDELSAYNSELRKKIEIVGLSQIDT-VDSDTLARKKNELATQCGQVPFE-FSSITGHG 314 (335)
Q Consensus 240 Ll~VVD~s~~---d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl-~~~e~~~~~~~~l~~~~~~~vi~-ISA~tg~G 314 (335)
|+||||++.. ||.++|+.|++||++|++.|.+||+|||+||+|+ .+.+++++..+.+.+...|.++. |||++++|
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g 320 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREG 320 (369)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHCCCC
T ss_conf 47998567656779899999999999985777535856999855577667899999999998740887631554310248
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999998545
Q gi|254780648|r 315 IPQILECLHDKIFSIR 330 (335)
Q Consensus 315 I~eL~~~I~e~L~~~r 330 (335)
+++|+..+++.+.+.+
T Consensus 321 ~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 321 LDELLRALAELLEETK 336 (369)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 7999999999999756
No 4
>PRK12299 obgE GTPase ObgE; Reviewed
Probab=100.00 E-value=0 Score=873.05 Aligned_cols=333 Identities=56% Similarity=0.969 Sum_probs=327.0
Q ss_pred CEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEECCCCCCCCCCCCCCC
Q ss_conf 21149999998369998414525667779999988888986529999668987215541465420567866542213354
Q gi|254780648|r 2 KFLDEAKVYIRSGDGGAGGISFRREKFIEFGGPDGGSGGRGGDVWIQATSNLNTLIDFRYQQHFKAQHGEKGMKRNRSGA 81 (335)
Q Consensus 2 ~f~D~~~i~~~~G~GG~G~~sf~r~k~~~~g~p~gg~GG~Gg~v~~~~~~~~~~l~~~~~~~~~~A~~G~~G~~~~~~G~ 81 (335)
||||+++|+|+||+|||||+|||||||+|+|||||||||+|||||+++|++++||++|+++++|+|+||++|++++++|+
T Consensus 1 kFiD~~~i~v~aG~GG~G~vsfrrek~~p~GgPdGGdGG~GG~V~~~~~~~~~tL~~~~~~~~~~A~~G~~G~~~~~~G~ 80 (334)
T PRK12299 1 KFIDEAKIYVKAGDGGNGCVSFRREKFIPFGGPDGGDGGRGGSVIFEADENLNTLIDFRYKRHFKAENGENGMGSNRTGK 80 (334)
T ss_pred CCEEEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCEEECCCCCCCCCCCCCCC
T ss_conf 97379999999558978644653244577899999889877779999839806546743464798278989997768589
Q ss_pred CCCCEEEECCCCCEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEC
Q ss_conf 44611998283323573258826645612684555226777763443326766767610136775302689999976301
Q gi|254780648|r 82 KGEDVVLTVPVGTQVFEEDGISLICDLDQEGQRIILAPGGNGGFGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKLIAD 161 (335)
Q Consensus 82 ~g~d~~i~vP~GT~v~~~~~~~~~~dl~~~~~~~~~~~GG~GG~GN~~f~s~~n~~P~~~~~G~~G~~~~~~lelk~iaD 161 (335)
+|+|++|+||+||+|++.+++++++||++++|++++|+||+||+||++|+||+||+|++||+|++||++++.||||+|||
T Consensus 81 ~G~D~~i~VP~GT~i~d~~~~~~i~dl~~~~~~~lva~GG~GG~GN~~Fkss~nr~P~~~~~G~~Ge~~~~~LeLkliAD 160 (334)
T PRK12299 81 SGKDLVLKVPVGTQIFDEDTGELIADLTEHGQRFLVAKGGKGGLGNAHFKSSTNRAPRYATPGEPGEERWLRLELKLLAD 160 (334)
T ss_pred CCCCEEEEECCCCEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECC
T ss_conf 99998998789667786789849998057984789976888876753134677889853569987638999999984403
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEE-CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001026632-9868998226421247311677512344333335788
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKE-GYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVL 240 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~-~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vL 240 (335)
|||||+||||||||||+||+|+||||+|||||+.|++|++++ ++.+|++||+||||||||+|+|||++||||||||++|
T Consensus 161 VgLVG~PNaGKSTLl~~is~A~pkIa~YpFTTl~P~lGvv~~~d~~~~~iaDiPGlIegA~~g~GLG~~FLrHieR~~~L 240 (334)
T PRK12299 161 VGLVGLPNAGKSTLISSVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLL 240 (334)
T ss_pred CEEEECCCCCHHHHHHHHHCCCCCCCCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCEE
T ss_conf 01463698746699998764764335787300387547999468867899866743355234777478998766534369
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 75202222110134666789987776675059889999746589988999999999986299489998887889999999
Q gi|254780648|r 241 LHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILE 320 (335)
Q Consensus 241 l~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~ 320 (335)
+||||+++++|+++|++|++||+.|++.|.+||+|||+||+|++++++..+..+++.+..+.++|+|||.+++|+++|++
T Consensus 241 ~~viD~s~~d~~~~~~~l~~EL~~y~~~L~~Kp~ivvlNK~Dl~~~~~~~~~~~~~~~~~~~~v~~ISA~~g~Gl~eL~~ 320 (334)
T PRK12299 241 LHLVDASSEDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEERKEKIKELIKALGGPVFLISAVTGEGLDELLR 320 (334)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
T ss_conf 99997998898999999999999850655369879999881068856789999999987099689997877849999999
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999985452303
Q gi|254780648|r 321 CLHDKIFSIRGENE 334 (335)
Q Consensus 321 ~I~e~L~~~r~e~E 334 (335)
.|++.|++.+.+++
T Consensus 321 ~i~~~L~~~~~~~~ 334 (334)
T PRK12299 321 ALWEFLKEQRREEK 334 (334)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999997786129
No 5
>PRK12296 obgE GTPase ObgE; Reviewed
Probab=100.00 E-value=0 Score=870.54 Aligned_cols=332 Identities=42% Similarity=0.727 Sum_probs=320.9
Q ss_pred CCEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEECCCCCCCCCCCCCC
Q ss_conf 92114999999836999841452566777999998888898652999966898721554146542056786654221335
Q gi|254780648|r 1 MKFLDEAKVYIRSGDGGAGGISFRREKFIEFGGPDGGSGGRGGDVWIQATSNLNTLIDFRYQQHFKAQHGEKGMKRNRSG 80 (335)
Q Consensus 1 m~f~D~~~i~~~~G~GG~G~~sf~r~k~~~~g~p~gg~GG~Gg~v~~~~~~~~~~l~~~~~~~~~~A~~G~~G~~~~~~G 80 (335)
.+|||+++|+|+||+|||||+|||||||+|+|||||||||+||||||++|++++||++|++++||+|+||++|++++++|
T Consensus 2 ~~FvD~~~i~v~aG~GG~G~~sfrrek~~p~ggPdGGdGG~GG~V~~~~d~~~~tL~~~~~~~~~~A~~G~~G~~~~~~G 81 (495)
T PRK12296 2 PRFVDRVVLHVRAGDGGNGCASVHREKFKPLGGPDGGNGGRGGSVVLVVDPQVTTLLDFHFHPHRKAPNGKPGMGDNRDG 81 (495)
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHCCCEEECCCCCCCCCCCCCC
T ss_conf 98668899999964898830687821157779999988988877999981995835887158768867998989888959
Q ss_pred CCCCCEEEECCCCCEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE
Q ss_conf 44461199828332357325882664561268455522677776344332676676761013677530268999997630
Q gi|254780648|r 81 AKGEDVVLTVPVGTQVFEEDGISLICDLDQEGQRIILAPGGNGGFGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKLIA 160 (335)
Q Consensus 81 ~~g~d~~i~vP~GT~v~~~~~~~~~~dl~~~~~~~~~~~GG~GG~GN~~f~s~~n~~P~~~~~G~~G~~~~~~lelk~ia 160 (335)
++|+|++|+||+||+|++++ +++|+||+.++|++++|+||+||+||+||+|++||+|++|+.|++||++++.||||++|
T Consensus 82 ~~G~Dl~i~VP~GTvV~~~~-g~~ladl~~~g~~~~va~GG~GG~GN~~f~s~~~~aP~~a~~Ge~Ge~~~~~LELK~iA 160 (495)
T PRK12296 82 AAGEDLVLPVPDGTVVLDED-GELLADLVGAGTRFVAAAGGRGGLGNAALASRARKAPGFALLGEPGEERDLVLELKSVA 160 (495)
T ss_pred CCCCCEEEECCCCEEEEECC-CCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEE
T ss_conf 99895799369953999389-96788753789689997168766575524665778987368998774799999999861
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 11244216777530354101454012121100000010266329868998226421247311677512344333335788
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVL 240 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vL 240 (335)
||||||+|||||||||++||+|+||||||||||+.||+|||+.++.+|++||+||||||||+|+|||++||||||||++|
T Consensus 161 DVGLvG~PNaGKSTLl~~iS~AkpkIA~YpFTTL~PnLGvv~~~d~~f~iADiPGLIeGAs~g~GLG~~FLRHieR~~vL 240 (495)
T PRK12296 161 DVGLVGFPSAGKSSLISAISAAKPKIADYPFTTLVPNLGVVSAGDHTFTVADVPGLIPGASEGRGLGLDFLRHIERCAVL 240 (495)
T ss_pred CCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCEE
T ss_conf 31101189996158998875488765787755457546789707952899856643465003898439999987525479
Q ss_pred HHHCCCCC----CCHHHHHHHHHHHHHHHHHH---------HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 75202222----11013466678998777667---------505988999974658998899999999998629948999
Q gi|254780648|r 241 LHIVSALE----ENVQAAYQCILDELSAYNSE---------LRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEF 307 (335)
Q Consensus 241 l~VVD~s~----~d~~~~~~~I~~EL~~y~~~---------L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~I 307 (335)
+||||++. +||+++|++|++||+.|++. |++||+|||+||||+++.+++.+.+++..+..++++|+|
T Consensus 241 ~hviD~~~~e~~rDP~~d~~~I~~EL~~Y~~~l~~~~~~~~L~erpqIVvlNKiDlp~a~e~~e~~~~~l~~~g~~Vf~I 320 (495)
T PRK12296 241 VHVVDCATLEPGRDPISDIDALEAELAAYTPTLQGDAGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEERGWPVFEV 320 (495)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99996887666789699999999999971914304433232101965999966567576999999999998749957998
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 88878899999999999998545230
Q gi|254780648|r 308 SSITGHGIPQILECLHDKIFSIRGEN 333 (335)
Q Consensus 308 SA~tg~GI~eL~~~I~e~L~~~r~e~ 333 (335)
||++++|+++|+..+++.|.+.+.+.
T Consensus 321 SA~t~eGl~eL~~~l~elv~~~~~~~ 346 (495)
T PRK12296 321 STVTREGLRPLSFALAELVSAARAAR 346 (495)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCHHCC
T ss_conf 64100389999999999998562025
No 6
>PRK12297 obgE GTPase ObgE; Reviewed
Probab=100.00 E-value=0 Score=867.97 Aligned_cols=329 Identities=43% Similarity=0.783 Sum_probs=314.9
Q ss_pred EEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 11499999983699984145256677799999888889865299996689872155414654205678665422133544
Q gi|254780648|r 3 FLDEAKVYIRSGDGGAGGISFRREKFIEFGGPDGGSGGRGGDVWIQATSNLNTLIDFRYQQHFKAQHGEKGMKRNRSGAK 82 (335)
Q Consensus 3 f~D~~~i~~~~G~GG~G~~sf~r~k~~~~g~p~gg~GG~Gg~v~~~~~~~~~~l~~~~~~~~~~A~~G~~G~~~~~~G~~ 82 (335)
|||+++|+|+||+|||||+|||||||+|+|||||||||+||||||++|++++||++|+++++|+|+||++|.+++++|++
T Consensus 2 FvD~~~i~v~aG~GG~G~vsfrrek~~~~GgP~GGdGG~GG~V~~~~d~~~~tL~~~~~~~~~~A~~G~~G~~~~~~G~~ 81 (429)
T PRK12297 2 FVDQVKIYVKAGDGGDGMVSFRREKYVPKGGPDGGDGGKGGSVIFVADEGLRTLLDFRYKRKFKAENGENGMGKNMHGRN 81 (429)
T ss_pred CEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 63899999996489880378762446777999999898777899999199583477467778984899899988883899
Q ss_pred CCCEEEECCCCCEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECE
Q ss_conf 46119982833235732588266456126845552267777634433267667676101367753026899999763011
Q gi|254780648|r 83 GEDVVLTVPVGTQVFEEDGISLICDLDQEGQRIILAPGGNGGFGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKLIADI 162 (335)
Q Consensus 83 g~d~~i~vP~GT~v~~~~~~~~~~dl~~~~~~~~~~~GG~GG~GN~~f~s~~n~~P~~~~~G~~G~~~~~~lelk~iaDV 162 (335)
|+|++|+||+||+|++.+++++|+||+.++|++++|+||+||+||+||+||+||+|++||+|++||++++.||||+||||
T Consensus 82 g~d~~i~VP~GT~v~d~~~~~~i~dl~~~g~~~~va~GG~GG~GN~~f~ss~~~aP~~ae~G~~Ge~~~~~LeLkliADV 161 (429)
T PRK12297 82 GEDLIIKVPVGTTVKDAETGEVLADLVEDGQEYVVAKGGRGGRGNARFATPTNPAPEIAENGEPGEERELRLELKLLADV 161 (429)
T ss_pred CCCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCC
T ss_conf 98579981897678866899198882479957999817978866432236777899725799876278999999953276
Q ss_pred EEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEEC-CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 244216777530354101454012121100000010266329-8689982264212473116775123443333357887
Q gi|254780648|r 163 GIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEG-YKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 163 glVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~-~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
||||+|||||||||++||+|+||||+|||||+.|++|+++.+ +.+|++||+||||||||+|+|||++||||||||++|+
T Consensus 162 GLvG~PNaGKSTll~~is~A~pkIa~YpFTTl~P~lGvv~~~~~~~~~iADiPGLIeGA~~g~GLG~~FLrHieR~~~L~ 241 (429)
T PRK12297 162 GLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADLPGLIEGASEGVGLGHQFLRHIERTRVIV 241 (429)
T ss_pred CEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCEEE
T ss_conf 33647998457899887548975578774025766668985698669996267456774468886688888766246799
Q ss_pred HHCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 520222---21101346667899877766750598899997465899889999999999862994899988878899999
Q gi|254780648|r 242 HIVSAL---EENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 242 ~VVD~s---~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
||||++ .+||+++|++|++||+.|++.|++||+|||+||+|++++++..+.+++... .+.++|+|||++++|+++|
T Consensus 242 hviD~s~~~~~dp~~d~~~i~~EL~~y~~~L~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~-~~~~i~~iSa~t~egl~~l 320 (429)
T PRK12297 242 HVIDMSGSEGRDPIEDYETINKELKKYNLRLLERPQIIVANKMDLPEAEENLEEFKEKLA-KGKKVFPISALTKQGLDEL 320 (429)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHCHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHH
T ss_conf 999787877779899999999999986898726966999976458576999999999753-4697899968445199999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999854523
Q gi|254780648|r 319 LECLHDKIFSIRGE 332 (335)
Q Consensus 319 ~~~I~e~L~~~r~e 332 (335)
+..+++.|.+.+.+
T Consensus 321 ~~~i~~~l~~~~~~ 334 (429)
T PRK12297 321 LYAIAELLEKTPPE 334 (429)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999999857122
No 7
>KOG1489 consensus
Probab=100.00 E-value=0 Score=692.08 Aligned_cols=320 Identities=38% Similarity=0.661 Sum_probs=303.5
Q ss_pred CEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEC-CCCCCCHHHHCCCCEECCCCCCCCCCCCCC
Q ss_conf 2114999999836999841452566777999998888898652999966-898721554146542056786654221335
Q gi|254780648|r 2 KFLDEAKVYIRSGDGGAGGISFRREKFIEFGGPDGGSGGRGGDVWIQAT-SNLNTLIDFRYQQHFKAQHGEKGMKRNRSG 80 (335)
Q Consensus 2 ~f~D~~~i~~~~G~GG~G~~sf~r~k~~~~g~p~gg~GG~Gg~v~~~~~-~~~~~l~~~~~~~~~~A~~G~~G~~~~~~G 80 (335)
.|+|+.+|.|++|+||+||+||+|++..|+|+|||||||+||+||++|. ...++|.+. .+.++|++|++|++.+++|
T Consensus 40 ~fiD~~rv~~kgG~GG~G~ssf~~~~~~~~g~PdGGdGG~GG~V~~~a~~~~~~~l~~~--~s~~~a~~Ge~~~s~~~~g 117 (366)
T KOG1489 40 NFIDKRRVRIKGGSGGSGASSFFRGYRRPRGGPDGGDGGNGGHVYFVAKPGAFKQLSHV--GSLIQAPNGENGKSKMCHG 117 (366)
T ss_pred HHHEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC--CCEEECCCCCCCCCCCCCC
T ss_conf 10000268740268887600111201665689988878878559999676644455667--7268746787675422457
Q ss_pred CCCCCEEEECCCCCEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE
Q ss_conf 44461199828332357325882664561268455522677776344332676676761013677530268999997630
Q gi|254780648|r 81 AKGEDVVLTVPVGTQVFEEDGISLICDLDQEGQRIILAPGGNGGFGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKLIA 160 (335)
Q Consensus 81 ~~g~d~~i~vP~GT~v~~~~~~~~~~dl~~~~~~~~~~~GG~GG~GN~~f~s~~n~~P~~~~~G~~G~~~~~~lelk~ia 160 (335)
+++++.+|+||+||+|+|.+.+.+++|++.+++++++|+||.||+||.+|.|..||+|+++++|.+|+++.+.||||+||
T Consensus 118 ~~ak~~~i~VP~Gt~v~d~~~~~~v~el~~~~~~~i~arGG~GG~gn~~fls~~~r~p~~~~~G~~G~e~~~~lELKsia 197 (366)
T KOG1489 118 SNAKHSEIRVPVGTVVKDIEQGKLVAELTKEGDRVIAARGGEGGKGNKFFLSNENRSPKFSKPGLNGEERVIELELKSIA 197 (366)
T ss_pred CCCCEEEEECCCCCEEEECCCCHHHHHHCCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEC
T ss_conf 87645799548863786400111688754578589996047787543132035556853036799876479999862105
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECC-EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 112442167775303541014540121211000000102663298-6899822642124731167751234433333578
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGY-KEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~-~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
||||||+||||||||||+||+||||||+|||||+.|++|++++++ .++++|||||||+|||+|+|||++||||||||++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~ 277 (366)
T KOG1489 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKG 277 (366)
T ss_pred CCCEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCE
T ss_conf 54321289886788987764058754554203444641125135451468504765344543467654899998875334
Q ss_pred HHHHCCCCCC---CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC-EEEEECCCCCCH
Q ss_conf 8752022221---101346667899877766750598899997465899889999999999862994-899988878899
Q gi|254780648|r 240 LLHIVSALEE---NVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQV-PFEFSSITGHGI 315 (335)
Q Consensus 240 Ll~VVD~s~~---d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~-vi~ISA~tg~GI 315 (335)
|+||||++.. +|+++++.+..||+.|...|.+||.+||+||+|++++++ +.+.++.+....+ |+++||++++|+
T Consensus 278 l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--~~l~~L~~~lq~~~V~pvsA~~~egl 355 (366)
T KOG1489 278 LLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK--NLLSSLAKRLQNPHVVPVSAKSGEGL 355 (366)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH--HHHHHHHHHCCCCCEEEEEECCCCCH
T ss_conf 8999977875558878999999999999865423585389974467366788--89999998737981787640046456
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780648|r 316 PQILECLHDK 325 (335)
Q Consensus 316 ~eL~~~I~e~ 325 (335)
++|++.|.+.
T Consensus 356 ~~ll~~lr~~ 365 (366)
T KOG1489 356 EELLNGLREL 365 (366)
T ss_pred HHHHHHHHHC
T ss_conf 8899877630
No 8
>pfam01018 GTP1_OBG GTP1/OBG. The N-terminal domain of the Spo0B-associated GTP-binding protein has the OBG fold, which is formed by three glycine-rich regions inserted into a small 8-stranded beta-sandwich these regions form six left-handed collagen-like helices packed and H-bonded together.
Probab=100.00 E-value=0 Score=414.79 Aligned_cols=156 Identities=54% Similarity=0.957 Sum_probs=155.0
Q ss_pred EEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 11499999983699984145256677799999888889865299996689872155414654205678665422133544
Q gi|254780648|r 3 FLDEAKVYIRSGDGGAGGISFRREKFIEFGGPDGGSGGRGGDVWIQATSNLNTLIDFRYQQHFKAQHGEKGMKRNRSGAK 82 (335)
Q Consensus 3 f~D~~~i~~~~G~GG~G~~sf~r~k~~~~g~p~gg~GG~Gg~v~~~~~~~~~~l~~~~~~~~~~A~~G~~G~~~~~~G~~ 82 (335)
|||+++|+|+||+||+||+||+||||+|+|||||||||+||||||++|++++||++|+++++|+|+||++|++++++|++
T Consensus 1 FvD~~~i~v~aG~GG~G~~sf~rek~~~~ggPdGG~GG~GG~V~l~ad~~l~tL~~~~~~~~~kA~nG~~G~~~~~~G~~ 80 (156)
T pfam01018 1 FVDQVEIYVAAGNGGNGCVSFRREKYVPKGGPDGGNGGRGGDVIFEADENLDTLLDFRYKKHFKAEDGKHGGSRNCHGKN 80 (156)
T ss_pred CEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 90589999996689895677871335546899899898887799998899492577421634997899998624575788
Q ss_pred CCCEEEECCCCCEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 4611998283323573258826645612684555226777763443326766767610136775302689999976
Q gi|254780648|r 83 GEDVVLTVPVGTQVFEEDGISLICDLDQEGQRIILAPGGNGGFGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKL 158 (335)
Q Consensus 83 g~d~~i~vP~GT~v~~~~~~~~~~dl~~~~~~~~~~~GG~GG~GN~~f~s~~n~~P~~~~~G~~G~~~~~~lelk~ 158 (335)
|+|++|+||+||+|+|.+++++|+||++++|+++||+||+||+||+||+||+||+|++||+|++||+++|.||||+
T Consensus 81 G~D~~I~VP~GT~V~d~~~~~vi~dl~~~g~~~lvakGG~GG~GN~~Fkss~n~aP~~~~~G~~Ge~~~~~LELKl 156 (156)
T pfam01018 81 GEDLVIKVPPGTVVLDLDNGELLADLVHHGQRLLAAKGGKGGLGNAAFKSPVNRAPGYALNGEPGEERDIRLELKL 156 (156)
T ss_pred CCCEEEEECCCCEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 8885898199658997999949999835893589853888874664004777889852569998608999999719
No 9
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=100.00 E-value=0 Score=321.74 Aligned_cols=167 Identities=47% Similarity=0.816 Sum_probs=153.8
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEE-CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 01124421677753035410145401212110000001026632-98689982264212473116775123443333357
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKE-GYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~-~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
|||||||+||||||||+|+||+++++|++|||||++|++|++.. ++.+++++||||++++||++.+++++||||++||+
T Consensus 1 ~~VAiiG~pNvGKSTLlN~l~~~~~~V~~~pgTT~~~~~g~i~~~~~~~i~~~DtpGi~~~~~~~~~l~~~~l~~i~~ad 80 (170)
T cd01898 1 ADVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CCEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 95899899999899999999678760325666523744779993698569996488644455466224899986133456
Q ss_pred HHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCHH
Q ss_conf 88752022221-10134666789987776675059889999746589988999999999986-29948999888788999
Q gi|254780648|r 239 VLLHIVSALEE-NVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQ-CGQVPFEFSSITGHGIP 316 (335)
Q Consensus 239 vLl~VVD~s~~-d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~-~~~~vi~ISA~tg~GI~ 316 (335)
+++||+|++.. ++.++++.+++||+.|+..+.+||.++|+||+|++++++..+..+++.+. ...++++|||++|+|++
T Consensus 81 vil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~gi~ 160 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLD 160 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf 17999989987898999999999999827444038650677620242835638999999985699958999754797999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780648|r 317 QILECLHDKI 326 (335)
Q Consensus 317 eL~~~I~e~L 326 (335)
+|+++|.+.|
T Consensus 161 ~L~~~I~~~L 170 (170)
T cd01898 161 ELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHC
T ss_conf 9999999669
No 10
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=100.00 E-value=1.4e-45 Score=297.85 Aligned_cols=163 Identities=26% Similarity=0.379 Sum_probs=139.4
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 01124421677753035410145401212110000001026632986899822642124731167751234433333578
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
|+|||||+||||||||||+||+|+++|++|||||++|+.|++.+++.+|+++|+||+|++|++++|+|.+||.++++|++
T Consensus 1 a~V~LVG~PN~GKSTLln~LT~a~~~v~~ypfTT~~pi~g~~~~~~~~iqlvDtPGli~~a~~g~g~g~~~l~~~r~aD~ 80 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCE
T ss_conf 95999999999999999999789954369897875747779998998999996730024633332068999999875899
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHH----------------------------------------------------
Q ss_conf 8752022221101346667899877766----------------------------------------------------
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAYNS---------------------------------------------------- 267 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~---------------------------------------------------- 267 (335)
++||+|++++ ..+++.+.+||+..+.
T Consensus 81 il~VvD~~~~--~~~~~~i~~eLe~~gi~l~~~~~~v~i~~~~~~gi~i~~~~~~~~~~~~~v~~il~e~~i~~a~v~i~ 158 (233)
T cd01896 81 ILMVLDATKP--EGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred EEEEEECCCC--HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
T ss_conf 9999847982--66789999999860511035787625777135867860456666688899999999827676437860
Q ss_pred --------------HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf --------------750598899997465899889999999999862994899988878899999999999998545
Q gi|254780648|r 268 --------------ELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 268 --------------~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e~L~~~r 330 (335)
....+|.++|+||+|+++.+++... .+ ..++++|||.++.|+++|++.|++.|.-.|
T Consensus 159 ~~~t~dd~~d~i~~n~~y~P~i~V~NKiDl~~~ee~~~~----~~--~~~~i~ISA~~g~gld~L~~~I~~~L~liR 229 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLL----AR--QPNSVVISAEKGLNLDELKERIWDKLGLIR 229 (233)
T ss_pred CCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHH----HC--CCCEEEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 578888989987357676737999974036998999986----46--798599988889898999999999839689
No 11
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=100.00 E-value=6.3e-43 Score=280.05 Aligned_cols=163 Identities=39% Similarity=0.655 Sum_probs=142.9
Q ss_pred EEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEEC-CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 44216777530354101454012121100000010266329-86899822642124731167751234433333578875
Q gi|254780648|r 164 IIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEG-YKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLH 242 (335)
Q Consensus 164 lVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~-~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl~ 242 (335)
|||+||||||||+|+||+++++|++|||||++|+.|++... +.+++++||||++++++++++++.+||+|+++|++++|
T Consensus 1 ivG~PNvGKSTL~N~Lt~~~~~v~~~pgTTr~~~~g~~~~~~~~~i~~~DtpGi~~~~~~~~~~~~~~l~~~~~~d~il~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 96999888999999996899603078996761246799947996699995787545733787899999987410889999
Q ss_pred HCCCCCC------CHHHHHHHHHHHHHHHHHH-----HCCCCEEEEEECCCCCCHHHHHHHHHH-HHHHCCCCEEEEECC
Q ss_conf 2022221------1013466678998777667-----505988999974658998899999999-998629948999888
Q gi|254780648|r 243 IVSALEE------NVQAAYQCILDELSAYNSE-----LRKKIEIVGLSQIDTVDSDTLARKKNE-LATQCGQVPFEFSSI 310 (335)
Q Consensus 243 VVD~s~~------d~~~~~~~I~~EL~~y~~~-----L~~Kp~IIVlNKiDl~~~e~~~~~~~~-l~~~~~~~vi~ISA~ 310 (335)
|+|+++. ++.++++.++.||..++.. +..||.++|+||+|+++.++..+.... +......++|+|||+
T Consensus 81 vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ii~iSA~ 160 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAK 160 (176)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECEECCCHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 99898765545445899999999999971156655543269719999686034700315999999974689958999777
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 7889999999999999
Q gi|254780648|r 311 TGHGIPQILECLHDKI 326 (335)
Q Consensus 311 tg~GI~eL~~~I~e~L 326 (335)
++.|+++|++.|.+.|
T Consensus 161 ~~~gi~~L~~~i~~~L 176 (176)
T cd01881 161 TEEGLDELIRAIYELL 176 (176)
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 8879999999999659
No 12
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=100.00 E-value=5.4e-41 Score=268.34 Aligned_cols=153 Identities=30% Similarity=0.496 Sum_probs=121.0
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE----EEEC-----------------CE---EEEEECCCCCC
Q ss_conf 124421677753035410145401212110000001026----6329-----------------86---89982264212
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI----VKEG-----------------YK---EFILADIPGII 217 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv----v~~~-----------------~~---~~~i~D~PGlI 217 (335)
|||||+||||||||+|++|.+..++|||||||++||+|+ +... .. .+.++|+|||+
T Consensus 1 iGiVGlPNvGKSTlFnAlT~~~~~~anyPF~TIePN~Gv~~v~v~~p~~~l~~~~~~~~~~~~~~~r~vPve~vDIAGLV 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEECCEEEEECHHHH
T ss_conf 93448898988999999977998512799667677416200556884166643304331201477400332675210010
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-------------CCHHHHHHHHHHHHHHHHHH----------------
Q ss_conf 4731167751234433333578875202222-------------11013466678998777667----------------
Q gi|254780648|r 218 KNAHQGAGIGDRFLKHTERTHVLLHIVSALE-------------ENVQAAYQCILDELSAYNSE---------------- 268 (335)
Q Consensus 218 egA~~~~glG~~FLrhIer~~vLl~VVD~s~-------------~d~~~~~~~I~~EL~~y~~~---------------- 268 (335)
+|||+|+|||.+||-||.+|++|+||||++. -||.+|+++|..||..++.+
T Consensus 81 ~GAskG~GLGNkFL~~iRe~DaiihVVd~sg~td~eg~~~~~g~~DP~~Die~I~~EL~lw~l~~l~k~~~k~~r~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 56645776659999999847889998504788678876477899596888999999999999999999999988887604
Q ss_pred ---------------------------------------------------HCCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf ---------------------------------------------------50598899997465899889999999999
Q gi|254780648|r 269 ---------------------------------------------------LRKKIEIVGLSQIDTVDSDTLARKKNELA 297 (335)
Q Consensus 269 ---------------------------------------------------L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~ 297 (335)
+..||+++|+||+|....+......+ .
T Consensus 161 ~~~~~~~l~e~lsgl~~~~~~v~~~l~~~~~~~~~~~w~~ee~~~l~~~~l~~~KP~i~vaNk~D~~~~~~~~~~~~--~ 238 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLR--L 238 (318)
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHH--H
T ss_conf 65389999998720364699999999854688872218999999999999986388799974344666210588999--8
Q ss_pred HHCCCCEEEEECCCCCCHH
Q ss_conf 8629948999888788999
Q gi|254780648|r 298 TQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 298 ~~~~~~vi~ISA~tg~GI~ 316 (335)
+..+..++++||....-+.
T Consensus 239 k~~~~~vV~~sA~~E~~L~ 257 (318)
T cd01899 239 KYPDEIVVPTSAEAELALR 257 (318)
T ss_pred HCCCCCEEEECHHHHHHHH
T ss_conf 6679846651299999999
No 13
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=8.6e-39 Score=254.99 Aligned_cols=166 Identities=28% Similarity=0.405 Sum_probs=128.9
Q ss_pred CCCCCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE----------------
Q ss_conf 6775302689999976301124421677753035410145401212110000001026632986----------------
Q gi|254780648|r 143 PGILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK---------------- 206 (335)
Q Consensus 143 ~G~~G~~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~---------------- 206 (335)
.|.+|-.+. +||||+||||||||+|++|.+.+.+|||||||++||+|++...+.
T Consensus 16 ~~~~~~~m~----------iGivGlPNvGKSTlFnAlT~~~v~~aNyPF~TIepN~gvv~VpD~Rl~~l~~~~~~kk~ip 85 (392)
T PTZ00258 16 LGRPGNNLK----------MGIVGLPNVGKSTTFNALSKQQVPAENFPFCTIDPNTARVPVPDERFDKLCQFFKPKSIVP 85 (392)
T ss_pred CCCCCCCCE----------EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEE
T ss_conf 477777855----------6786699997899999987799742489988877832799678456889987518776101
Q ss_pred -EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC----------CCHHHHHHHHHHHHHHHHHH-------
Q ss_conf -899822642124731167751234433333578875202222----------11013466678998777667-------
Q gi|254780648|r 207 -EFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALE----------ENVQAAYQCILDELSAYNSE------- 268 (335)
Q Consensus 207 -~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl~VVD~s~----------~d~~~~~~~I~~EL~~y~~~------- 268 (335)
.+.++|+|||++|||+|+|||.+||-||..|++|+||||+++ .||++|+++|..||-..+.+
T Consensus 86 a~ve~vDIAGLV~GAs~G~GLGNkFL~~iR~~DaiihVVR~F~d~~I~hv~g~vDPv~Die~I~~ELilaDl~~vekr~~ 165 (392)
T PTZ00258 86 ATLDIVDIAGLVKGASKGEGLGNAFLSHIRACDGIYHVVRAFEDEEITHVEGEVDPIRDLEIISSELVLKDLEFVEKLLD 165 (392)
T ss_pred EEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 46899973455787302688518999998840079999987245777788999797999999999999988999999999
Q ss_pred ----------------------------------------------------HCCCCEEEEEECCC--CC-CHHH-HHHH
Q ss_conf ----------------------------------------------------50598899997465--89-9889-9999
Q gi|254780648|r 269 ----------------------------------------------------LRKKIEIVGLSQID--TV-DSDT-LARK 292 (335)
Q Consensus 269 ----------------------------------------------------L~~Kp~IIVlNKiD--l~-~~e~-~~~~ 292 (335)
|..||+++|+|+.+ +. +... ..+.
T Consensus 166 rl~k~~~~~~~k~~~~~~~~l~k~~~~L~~g~~~~~~~~~~ee~~~l~~~~llT~KP~lyvaNv~E~~~~~~~n~~~~~l 245 (392)
T PTZ00258 166 KLTKVINRGKDKSKKEELDVLKKVKELLEEGKWVRDGKWTDKEIEFLNEYQLLTAKPMIYLVNMSEKDFVRQKNKWLAKI 245 (392)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCHHHHHH
T ss_conf 98867614645768999999999999998799320031577899999997887517828999868666432025899999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 99999862994899988878899999
Q gi|254780648|r 293 KNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 293 ~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
...+.+..+..++++||....-+.+|
T Consensus 246 ~~~~~~~~~~~~I~isA~~E~eL~~l 271 (392)
T PTZ00258 246 KEWVDENRPGPIIPVSAELEEQLAQL 271 (392)
T ss_pred HHHHHHHCCCCEEEEECHHHHHHHHC
T ss_conf 99998638983999630637887633
No 14
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-39 Score=258.05 Aligned_cols=160 Identities=28% Similarity=0.482 Sum_probs=129.7
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE------------------EEEEECCCCCCCCCCC
Q ss_conf 1124421677753035410145401212110000001026632986------------------8998226421247311
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK------------------EFILADIPGIIKNAHQ 222 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~------------------~~~i~D~PGlIegA~~ 222 (335)
-+||||+||||||||+|++|++.+++|||||||++||.|++...+. .+.++|++||++|||+
T Consensus 4 ~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~ 83 (372)
T COG0012 4 KIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASK 83 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCC
T ss_conf 26774189885888999997489642489854265773279647367899987538997477610489982453788546
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCC----------CHHHHHHHHHHHHHHHHHH------------------------
Q ss_conf 677512344333335788752022221----------1013466678998777667------------------------
Q gi|254780648|r 223 GAGIGDRFLKHTERTHVLLHIVSALEE----------NVQAAYQCILDELSAYNSE------------------------ 268 (335)
Q Consensus 223 ~~glG~~FLrhIer~~vLl~VVD~s~~----------d~~~~~~~I~~EL~~y~~~------------------------ 268 (335)
|+|||.+||-||+.+++|+||||++++ ||.+|+++|..||-..+.+
T Consensus 84 GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~k~~k~a~~~~~~~k~~~ 163 (372)
T COG0012 84 GEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDKELK 163 (372)
T ss_pred CCCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 88864787876551485899998538986547878839277799999999999999999999999988750662379999
Q ss_pred ----------------------------------------HCCCCEEEEEECCCCCCHHH--HHHHHHHHHHHCCCCEEE
Q ss_conf ----------------------------------------50598899997465899889--999999999862994899
Q gi|254780648|r 269 ----------------------------------------LRKKIEIVGLSQIDTVDSDT--LARKKNELATQCGQVPFE 306 (335)
Q Consensus 269 ----------------------------------------L~~Kp~IIVlNKiDl~~~e~--~~~~~~~l~~~~~~~vi~ 306 (335)
+..||+++++||.|...++. ..+.++++.+..+.++++
T Consensus 164 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vv~ 243 (372)
T COG0012 164 EELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVP 243 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99998887899998200220277445899999998876564049869999777654311169999999976650895999
Q ss_pred EECCCCCCHHHHHH
Q ss_conf 98887889999999
Q gi|254780648|r 307 FSSITGHGIPQILE 320 (335)
Q Consensus 307 ISA~tg~GI~eL~~ 320 (335)
+||....-+.+|-+
T Consensus 244 ~sA~~E~eL~~l~~ 257 (372)
T COG0012 244 VSAAIELELRELAD 257 (372)
T ss_pred EEHHHHHHHHHCCC
T ss_conf 41899999985746
No 15
>PRK09601 translation-associated GTPase; Reviewed
Probab=100.00 E-value=1.6e-38 Score=253.43 Aligned_cols=152 Identities=31% Similarity=0.506 Sum_probs=125.5
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE-----------------EEEEECCCCCCCCCCCC
Q ss_conf 1124421677753035410145401212110000001026632986-----------------89982264212473116
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK-----------------EFILADIPGIIKNAHQG 223 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~-----------------~~~i~D~PGlIegA~~~ 223 (335)
-+||||+||||||||+|++|++.+.++||||||.+||.|++...+. ++.++|+|||++|||+|
T Consensus 4 kiGivGlPnvGKSTlFnalT~~~~~~~nyPf~Ti~pn~g~v~VpD~r~~~l~~~~~p~k~i~a~v~~vDiaGLv~gAs~G 83 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDPRLDKLAEIVKPKKIVPTTIEFVDIAGLVKGASKG 83 (364)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf 48887799998899999996799864589988878800688578545899987628765011258999657767875346
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCC----------CHHHHHHHHHHHHHHHHHH-------------------------
Q ss_conf 77512344333335788752022221----------1013466678998777667-------------------------
Q gi|254780648|r 224 AGIGDRFLKHTERTHVLLHIVSALEE----------NVQAAYQCILDELSAYNSE------------------------- 268 (335)
Q Consensus 224 ~glG~~FLrhIer~~vLl~VVD~s~~----------d~~~~~~~I~~EL~~y~~~------------------------- 268 (335)
+|||.+||-||..+++|+||||++++ ||.+|+++|..||...+.+
T Consensus 84 ~GLGN~FL~~iR~~DaiihVVr~F~d~~i~hv~G~vDP~rDie~I~~EL~l~Dl~~vek~~~rl~k~~k~~~k~~~~e~~ 163 (364)
T PRK09601 84 EGLGNKFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLESVEKRLERLEKKAKSGDKEAKAELE 163 (364)
T ss_pred CCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 77428999988734756775000268754689999697889999999999999999999999997553132445799999
Q ss_pred ---------------------------------HCCCCEEEEEE--CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf ---------------------------------50598899997--465899889999999999862994899988878
Q gi|254780648|r 269 ---------------------------------LRKKIEIVGLS--QIDTVDSDTLARKKNELATQCGQVPFEFSSITG 312 (335)
Q Consensus 269 ---------------------------------L~~Kp~IIVlN--KiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg 312 (335)
|..||+++|+| +.|+.......+.+.++.+..+.+++++||.-.
T Consensus 164 ~L~k~~~~Le~~~~lr~~~~~~ee~~~i~~~~lLT~KP~i~v~Nv~e~d~~~~n~~~~~l~~~~~~~~~~vi~~sa~~E 242 (364)
T PRK09601 164 LLEKLLEHLEEGKPARSLELTEEEKKLLKGLQLLTAKPVLYVANVDEDDLADGNPYVDKVREIAAKEGAEVVVICAKIE 242 (364)
T ss_pred HHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCHHHHHHHHHHHHCCCEEEEEEHHHH
T ss_conf 9999999986799666504788899999986565338759998768655112558999999999876991898634444
No 16
>PRK09602 translation-associated GTPase; Reviewed
Probab=100.00 E-value=8.1e-39 Score=255.17 Aligned_cols=146 Identities=28% Similarity=0.505 Sum_probs=115.9
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEE----C--------------------CEEEEEECCCCC
Q ss_conf 1124421677753035410145401212110000001026632----9--------------------868998226421
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKE----G--------------------YKEFILADIPGI 216 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~----~--------------------~~~~~i~D~PGl 216 (335)
-+||||+||||||||||+||++++.+|||||||++||+|++.. . ..++.++|+|||
T Consensus 4 k~GIVGLPNvGKSTlFnaLT~~~~~~aNyPF~TIePn~Gi~~v~v~~pd~~l~~~~~~~~~~~~~~~~~vpie~vDIAGL 83 (396)
T PRK09602 4 QIGLVGKPNVGKSTFFSAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGVRFIPVELIDVAGL 83 (396)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCC
T ss_conf 48888899998899999997799864589988877843625233688436665430654221357733655899875556
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-------------CCHHHHHHHHHHHHHHHHH----------------
Q ss_conf 24731167751234433333578875202222-------------1101346667899877766----------------
Q gi|254780648|r 217 IKNAHQGAGIGDRFLKHTERTHVLLHIVSALE-------------ENVQAAYQCILDELSAYNS---------------- 267 (335)
Q Consensus 217 IegA~~~~glG~~FLrhIer~~vLl~VVD~s~-------------~d~~~~~~~I~~EL~~y~~---------------- 267 (335)
++|||+|.|||.+||.||+.+++|+||||+++ .||..|+++|..||...+.
T Consensus 84 VkGAS~GeGLGNkFLs~IRevDaI~hVVr~~~~~d~e~~~~~~g~~DP~~DieiI~~EL~laDl~~lek~~~r~~k~~k~ 163 (396)
T PRK09602 84 VPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDVKFLENEIDMWIYGILEKNWEKLSRKAQA 163 (396)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76501168760899998872687999975358866656526678869077899999999999999987668989999870
Q ss_pred ---------------------------------------------------HHCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf ---------------------------------------------------75059889999746589988999999999
Q gi|254780648|r 268 ---------------------------------------------------ELRKKIEIVGLSQIDTVDSDTLARKKNEL 296 (335)
Q Consensus 268 ---------------------------------------------------~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l 296 (335)
-|..||.+.|+||.|....++..+ .+
T Consensus 164 ~~~~~~~~~~e~l~~l~~~~~~v~~~l~~~~~~~~~~~~~~ee~~~l~~~~llt~KP~iyv~N~~D~~~~~~~~~---~l 240 (396)
T PRK09602 164 EKFDLEEALAEQLSGLGISEEHVKEALRELGLPEDPSKWSEEDLLKFARELRKISKPMVIAANKADLPEAEENIE---RL 240 (396)
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHH---HH
T ss_conf 575389999999740354699999999865887660207988999999987874187899987534323168999---98
Q ss_pred HHHCCCCEEEEECC
Q ss_conf 98629948999888
Q gi|254780648|r 297 ATQCGQVPFEFSSI 310 (335)
Q Consensus 297 ~~~~~~~vi~ISA~ 310 (335)
. .....++++||.
T Consensus 241 ~-~~~~~vi~~sa~ 253 (396)
T PRK09602 241 K-EKDYIVVPTSAE 253 (396)
T ss_pred H-HCCCCEEEECHH
T ss_conf 7-348857750189
No 17
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=9e-39 Score=254.89 Aligned_cols=164 Identities=28% Similarity=0.430 Sum_probs=138.3
Q ss_pred EECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 30112442167775303541014540121211000000102663298689982264212473116775123443333357
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
-|-|+|||+||+|||||||+||++++++|+|||||+.|+.|++++++.++++.|+||||+||+.|+|.|.++|--+..|+
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~vPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vls~~R~AD 142 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 73899976887458999988768876434567410244574475478169997276312576568887646546521588
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHH---------------------------------------------------
Q ss_conf 88752022221101346667899877766---------------------------------------------------
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNS--------------------------------------------------- 267 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~--------------------------------------------------- 267 (335)
+++.|+|+.... ..++.|..||+.-..
T Consensus 143 lIiiVld~~~~~--~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 143 LIIIVLDVFEDP--HHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred EEEEEEECCCCH--HHHHHHHHHHHHCCEEECCCCCCEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 899997168882--488999999985676821799965999952598798045456668999999999972836306999
Q ss_pred ---------------HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf ---------------750598899997465899889999999999862994899988878899999999999998545
Q gi|254780648|r 268 ---------------ELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 268 ---------------~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e~L~~~r 330 (335)
...-+|.++|+||+|++..++.....+.. +.++|||.++.|+++|++.|++.|.-+|
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~------~~v~isa~~~~nld~L~e~i~~~L~liR 292 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP------NSVPISAKKGINLDELKERIWDVLGLIR 292 (365)
T ss_pred ECCCCHHHHHHHHHHCCEEEEEEEEEECCCCCCHHHHHHHHHCC------CEEEEECCCCCCHHHHHHHHHHHHCEEE
T ss_conf 46886899999984162132368999525566878899997345------6289865568798899999998748189
No 18
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=100.00 E-value=9.3e-38 Score=248.73 Aligned_cols=160 Identities=25% Similarity=0.397 Sum_probs=128.9
Q ss_pred EECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEE-CCEEEEEECCCCCCCCCCCCCCCHHHH---HHHH
Q ss_conf 301124421677753035410145401212110000001026632-986899822642124731167751234---4333
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKE-GYKEFILADIPGIIKNAHQGAGIGDRF---LKHT 234 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~-~~~~~~i~D~PGlIegA~~~~glG~~F---LrhI 234 (335)
++-|||||+||||||||||+||++++.|++|||||++|..+.+.. +..+++++||||+|.+.. ..+-..| |+|+
T Consensus 41 ~p~VaivG~PNvGKSTLlN~L~g~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~i~~~p--~~lie~~~~tle~i 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTLEEV 118 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCC--HHHHHHHHHHHHHH
T ss_conf 9879998899998999999994899634156776457636689956997799983686446783--78999999999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 33578875202222110134666789987776675059889999746589988999999999986299489998887889
Q gi|254780648|r 235 ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHG 314 (335)
Q Consensus 235 er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~G 314 (335)
++|++++||+|+++++..++++.+.+.|+.+ ...++|.++|+||+|+++.+..... ......++++|||++|+|
T Consensus 119 ~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l--~~~~k~~i~V~NKiDl~~~~~~~~~----~~~~~~~~i~ISA~~g~G 192 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKEL--GAEDIPMILVLNKIDLLDDEELEER----LEAGRPDAVFISAKTGEG 192 (204)
T ss_pred HHCCEEEEEEECCCCCHHHHHHHHHHHHHHH--CCCCCCEEEEEECCCCCCCHHHHHH----HHHCCCCEEEEECCCCCC
T ss_conf 7398999999799853667799999999980--6555760788867047995758999----970899879998868949
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780648|r 315 IPQILECLHDKI 326 (335)
Q Consensus 315 I~eL~~~I~e~L 326 (335)
+++|++.|.+.|
T Consensus 193 id~L~~~I~e~L 204 (204)
T cd01878 193 LDELLEAIEELL 204 (204)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999559
No 19
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=100.00 E-value=3.7e-37 Score=245.12 Aligned_cols=160 Identities=24% Similarity=0.387 Sum_probs=127.2
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCC----HHHHHHHHHH
Q ss_conf 112442167775303541014540121211000000102663298689982264212473116775----1234433333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGI----GDRFLKHTER 236 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~gl----G~~FLrhIer 236 (335)
-|+|||+||||||||+|+||+++++|++|||||++++.|.+..++.+++++||||+++.+++..+. ...+++|+
T Consensus 2 ~VaivG~pNvGKStL~N~L~g~~~~v~~~p~TTr~~~~~~~~~~~~~~~liDTpGi~~~~~~~~~~ie~~~~~~l~~~-- 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL-- 79 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC--
T ss_conf 799988999889999999958986023758723574368999837276872488655674788889999999999835--
Q ss_pred HHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 57887520222211--0134666789987776675059889999746589988999999999986299489998887889
Q gi|254780648|r 237 THVLLHIVSALEEN--VQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHG 314 (335)
Q Consensus 237 ~~vLl~VVD~s~~d--~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~G 314 (335)
+++++||+|+++.+ ..++...+.+++.. .+.++|.++|+||+|+++++.+.+..+ +.+..+.++++|||++|+|
T Consensus 80 ~d~il~viD~~~~~~~~~~~~~~l~~~i~~---~~~~~p~i~v~NK~Dl~~~~~~~~~~~-~~~~~~~~vi~ISA~~g~G 155 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKP---LFKNKPVIVVLNKIDLLTFEDLSEIEE-EEELEGEEVLKISTLTEEG 155 (168)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHH---HHCCCCEEEEEECCCCCCCCCHHHHHH-HHHCCCCCEEEEECCCCCC
T ss_conf 776899996887678489999999998776---525888799994753458100799999-9970899889998158969
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780648|r 315 IPQILECLHDKI 326 (335)
Q Consensus 315 I~eL~~~I~e~L 326 (335)
+++|++.|.+.|
T Consensus 156 i~~L~~~i~ell 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999963
No 20
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=100.00 E-value=3.7e-37 Score=245.12 Aligned_cols=156 Identities=23% Similarity=0.367 Sum_probs=128.3
Q ss_pred EEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCC--CCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 442167775303541014540121211000000102663298689982264212--473116775123443333357887
Q gi|254780648|r 164 IIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGII--KNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 164 lVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlI--egA~~~~glG~~FLrhIer~~vLl 241 (335)
|||+||||||||+|+|+++++.|++|||||++|..|.+..++.+++++||||+. +..++.......++.+ +++++++
T Consensus 1 ivG~pNvGKSTL~N~L~g~~~~vs~~pgtTrd~~~~~~~~~~~~~~lvDtpGi~~~~~~~~~e~i~~~~~~~-~~~d~vl 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH-CCCCCEE
T ss_conf 979898889999999959986461789827634788996299379999798741256413567899999985-1787179
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 52022221101346667899877766750598899997465899889999999999862994899988878899999999
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILEC 321 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~ 321 (335)
||+|+++ +..++..+. ++.. .++|.++|+||+|+++++......+.+.+..+.++++|||++|+|+++|++.
T Consensus 80 ~vvD~~~--~~~~l~~~~-~l~~-----~~~p~ivV~NK~D~~~~~~~~~~~~~l~~~~~~~ii~iSA~~g~Gi~~L~~~ 151 (158)
T cd01879 80 NVVDATN--LERNLYLTL-QLLE-----LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEECCH--HHHHHHHHH-HHHH-----CCCCEEEEEEHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
T ss_conf 9977740--677689999-9986-----5998899940277655225466799999871994899987789799999999
Q ss_pred HHHHHHH
Q ss_conf 9999985
Q gi|254780648|r 322 LHDKIFS 328 (335)
Q Consensus 322 I~e~L~~ 328 (335)
|.+.+++
T Consensus 152 i~el~~k 158 (158)
T cd01879 152 IAELAEK 158 (158)
T ss_pred HHHHHCC
T ss_conf 9998675
No 21
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=100.00 E-value=5.6e-37 Score=244.00 Aligned_cols=159 Identities=20% Similarity=0.310 Sum_probs=130.2
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCC--CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 112442167775303541014540121211000000102663298689982264212--473116775123443333357
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGII--KNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlI--egA~~~~glG~~FLrhIer~~ 238 (335)
-|+|||+||||||||+|+|+++++.|+++||||+++..|.+..++.+++++||||+. +..++...+..+|+.+ ++++
T Consensus 1 tVaIvG~PNvGKSTLlN~L~g~~~~Vs~~pGtTrd~~~~~~~~~~~~~~lvDTpGi~~~~~~~~~e~v~~~~~~~-~~aD 79 (188)
T pfam02421 1 TIALVGNPNVGKTTLFNALTGARQHVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGTYSLSPYSEEEKVARDYLLE-EKPD 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH-CCCC
T ss_conf 989988999899999999959996563899972333576875251679999688850146532789999999862-3687
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 88752022221101346667899877766750598899997465899889999999999862994899988878899999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
+++||+|++.. ..+... ..|+.. .++|.|+|+||+|+++.+......+.+.+..+.++++|||++|+|+++|
T Consensus 80 lvl~vvDa~~~--er~l~l-~~~l~~-----~~~p~IvVlNK~Dl~~~~~~~~~~~~l~~~lg~~vi~ISA~~g~Gi~eL 151 (188)
T pfam02421 80 VIINVVDATNL--ERNLYL-TLQLLE-----LGIPVVVALNMMDEAEKKGIKIDIKKLSELLGVPVVPTSARKGEGIDEL 151 (188)
T ss_pred CEEEEEECCCH--HHHHHH-HHHHHH-----CCCCEEEEECCCHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHH
T ss_conf 36999767624--544899-999997-----6998899961702010036520399999873996899993169999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999985
Q gi|254780648|r 319 LECLHDKIFS 328 (335)
Q Consensus 319 ~~~I~e~L~~ 328 (335)
++.|.+.++.
T Consensus 152 ~~~I~~~~~~ 161 (188)
T pfam02421 152 KDAIIEVAEG 161 (188)
T ss_pred HHHHHHHHHC
T ss_conf 9999999726
No 22
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=100.00 E-value=5.7e-37 Score=243.95 Aligned_cols=159 Identities=24% Similarity=0.380 Sum_probs=132.9
Q ss_pred EECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEE-CCEEEEEECCCCCCCCCCCCCCCHHHH---HHHH
Q ss_conf 301124421677753035410145401212110000001026632-986899822642124731167751234---4333
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKE-GYKEFILADIPGIIKNAHQGAGIGDRF---LKHT 234 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~-~~~~~~i~D~PGlIegA~~~~glG~~F---LrhI 234 (335)
+--||||||||||||||||+||++.+.++||||||++|+.+.+.. +..+++++||+|+|.. ....|...| |+++
T Consensus 189 ~p~ValVGYTNAGKSTL~n~Lt~~~~~~~d~lFaTLd~t~r~~~l~~~~~~ll~DTVGFI~~--LP~~Li~aF~sTLee~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRATLEEV 266 (351)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCEEECCCCCEEEEEECCCHHHH--CCHHHHHHHHHHHHHH
T ss_conf 97699966788778999999851776410343135367320488799976999815005630--8867999999999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 33578875202222110134666789987776675059889999746589988999999999986299489998887889
Q gi|254780648|r 235 ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHG 314 (335)
Q Consensus 235 er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~G 314 (335)
..||+|+||||+|+++..++++.+.+.|+.. .+.++|+|+|+||+|+++++..... .... ...++|||++++|
T Consensus 267 ~~aDlllhVvD~S~~~~~~~~~~v~~~L~el--g~~~~p~i~V~NKiD~~~~~~~~~~----~~~~-~~~v~ISA~~g~g 339 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEEVLEEL--GAEDIPQLLVYNKIDLLDEPRIERL----EEGY-PEAVFVSAKTGEG 339 (351)
T ss_pred HHCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCCCCCEEEEEECHHCCCHHHHHHH----HHCC-CCEEEEECCCCCC
T ss_conf 8598999980588847899999999999976--9999988999967015895778998----7379-9879996899989
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780648|r 315 IPQILECLHDKI 326 (335)
Q Consensus 315 I~eL~~~I~e~L 326 (335)
+++|++.|.+.|
T Consensus 340 i~~L~~~I~~~L 351 (351)
T TIGR03156 340 LDLLLEAIAERL 351 (351)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999559
No 23
>TIGR00092 TIGR00092 GTP-binding protein YchF; InterPro: IPR004396 This is a family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined . This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and a C-terminal domain composed of a six-stranded half-barrel curved around an alpha helix. The central and C-terminal domains are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; GO: 0005525 GTP binding.
Probab=100.00 E-value=1.7e-36 Score=241.04 Aligned_cols=169 Identities=28% Similarity=0.441 Sum_probs=134.0
Q ss_pred EEEEECCCCCCCEEEEEECCCCC-HHHHHHHCCCEECCEEEEECCE------------------EEEEECCCCCCCCCCC
Q ss_conf 12442167775303541014540-1212110000001026632986------------------8998226421247311
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKP-KIADYPFTTLYPNLGIVKEGYK------------------EFILADIPGIIKNAHQ 222 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~-kIa~ypFTT~~P~lGvv~~~~~------------------~~~i~D~PGlIegA~~ 222 (335)
-|+||+|||||||||||||++.. .+|||||.|++|+.|+|...+. .+.|+||+||+.|||+
T Consensus 5 aGIVGLpNVGKSTlF~AiT~~~~ge~ANYPFaTIePn~g~V~vpd~RLd~La~i~k~~k~evptt~~fvDIAGLvkGAS~ 84 (390)
T TIGR00092 5 AGIVGLPNVGKSTLFNAITNLQLGEAANYPFATIEPNTGVVNVPDPRLDKLAEIYKPEKVEVPTTLEFVDIAGLVKGASK 84 (390)
T ss_pred CCCEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCEEECCEEEEEEEECCCCCCCCC
T ss_conf 65300687605579999982667776688876516764446258853334776406420411404899862234100015
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCC----------CHHHHHHHHHHHHHHHHHH------------------------
Q ss_conf 677512344333335788752022221----------1013466678998777667------------------------
Q gi|254780648|r 223 GAGIGDRFLKHTERTHVLLHIVSALEE----------NVQAAYQCILDELSAYNSE------------------------ 268 (335)
Q Consensus 223 ~~glG~~FLrhIer~~vLl~VVD~s~~----------d~~~~~~~I~~EL~~y~~~------------------------ 268 (335)
|.|||.+||.||+.++.|+|||-|.++ ||+.|+++|.+||..-|.+
T Consensus 85 GeGLGN~FLanIReVd~I~hVVRCF~d~~I~HV~G~VDPV~D~evI~~EL~LaDle~~~~~~E~~~~~i~~~~k~a~~~D 164 (390)
T TIGR00092 85 GEGLGNQFLANIREVDAICHVVRCFEDDDIIHVEGKVDPVRDLEVINNELILADLEFVEKILERLEKRIGKVKKKAKEGD 164 (390)
T ss_pred CCCCHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 78723344310320331047886330773588517517623268888888888899999999999999997404231003
Q ss_pred -------------------------------------------HCCCCEEEEEECC--CCCC--HHHHHHHHHHHHHHC-
Q ss_conf -------------------------------------------5059889999746--5899--889999999999862-
Q gi|254780648|r 269 -------------------------------------------LRKKIEIVGLSQI--DTVD--SDTLARKKNELATQC- 300 (335)
Q Consensus 269 -------------------------------------------L~~Kp~IIVlNKi--Dl~~--~e~~~~~~~~l~~~~- 300 (335)
|.-||.++++|=. |+.. ...+....+.+.+..
T Consensus 165 K~~K~E~~lL~~~~~~L~~g~~~~~~~dhl~~~E~~~iks~~lLT~KP~l~~~NVsE~D~~~~~N~~~~~~~e~~~~~~~ 244 (390)
T TIGR00092 165 KEAKEELALLEKILEGLENGQMVRHVGDHLTEEELKIIKSLNLLTAKPILYLANVSEDDLVNLDNKYLLRVKEIAAKQKP 244 (390)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCHHHHHHHEEECCCHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 77888899999999998638843310234588899999862212100140543168110036788378999999972389
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 994899988878899999999999998545
Q gi|254780648|r 301 GQVPFEFSSITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 301 ~~~vi~ISA~tg~GI~eL~~~I~e~L~~~r 330 (335)
...++++||.-..-+-+|...-.+...+..
T Consensus 245 ~~~~~~vsa~~E~~L~eL~~~~~~~f~~~l 274 (390)
T TIGR00092 245 GDKVIPVSAALESELSELDDEERQDFLKEL 274 (390)
T ss_pred CCEEEEEEHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 972888668788887438864247999860
No 24
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00 E-value=5.5e-36 Score=238.00 Aligned_cols=157 Identities=31% Similarity=0.515 Sum_probs=128.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE-----------------EEEEECCCCCCCCCCCCC
Q ss_conf 124421677753035410145401212110000001026632986-----------------899822642124731167
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK-----------------EFILADIPGIIKNAHQGA 224 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~-----------------~~~i~D~PGlIegA~~~~ 224 (335)
|||||+||||||||+|+||+++...++|||+|.+||+|++...+. ++.++|+|||++|||+|.
T Consensus 1 ~GivGlpnvGKstlFnalT~~~~~~~nypf~ti~pn~g~v~VpD~Rl~~L~~~~~p~k~i~a~vefvDIaGLvkgAs~Ge 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCC
T ss_conf 95647899988999999977998745899777268058996775658899873177651235789985465567752367
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCC----------CHHHHHHHHHHHHHHHHHH--------------------------
Q ss_conf 7512344333335788752022221----------1013466678998777667--------------------------
Q gi|254780648|r 225 GIGDRFLKHTERTHVLLHIVSALEE----------NVQAAYQCILDELSAYNSE-------------------------- 268 (335)
Q Consensus 225 glG~~FLrhIer~~vLl~VVD~s~~----------d~~~~~~~I~~EL~~y~~~-------------------------- 268 (335)
|||.+||.||+.+++|+|||++.++ ||..|+++|..||-..|.+
T Consensus 81 GLGN~FL~~Ir~vDai~hVVR~F~d~~I~Hv~g~vDP~rDieiI~~ELiLaDLe~vEKrlekl~K~~k~~dk~~~~e~~~ 160 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGDKEAKAELEL 160 (274)
T ss_pred CCCHHHHHHHHHCCEEEEEHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 65089999987346346532111577301789997979999999999999999999999999887750477778999999
Q ss_pred --------------------------------HCCCCEEEEEECC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf --------------------------------5059889999746--589988999999999986299489998887889
Q gi|254780648|r 269 --------------------------------LRKKIEIVGLSQI--DTVDSDTLARKKNELATQCGQVPFEFSSITGHG 314 (335)
Q Consensus 269 --------------------------------L~~Kp~IIVlNKi--Dl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~G 314 (335)
|..||++.|+|-. |+.+..........+.+..+.+++++||.-..-
T Consensus 161 L~ki~~~Le~g~~~r~~~~~~ee~~~i~~l~LLT~KPviyV~Nv~E~d~~~~~~~~~~~~~~~~~~~~~~I~isakiE~E 240 (274)
T cd01900 161 LEKIKEHLEEGKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEVIPISAKIEAE 240 (274)
T ss_pred HHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHH
T ss_conf 99999998679810205689889999986316533875999978867743662889999999766899099978999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780648|r 315 IPQI 318 (335)
Q Consensus 315 I~eL 318 (335)
+.+|
T Consensus 241 i~~L 244 (274)
T cd01900 241 LAEL 244 (274)
T ss_pred HHCC
T ss_conf 9679
No 25
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=100.00 E-value=3.3e-35 Score=233.29 Aligned_cols=160 Identities=26% Similarity=0.334 Sum_probs=127.3
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCH-HHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCC-CCCCHHHHHHHHHHHH
Q ss_conf 1124421677753035410145401-2121100000010266329868998226421247311-6775123443333357
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPK-IADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQ-GAGIGDRFLKHTERTH 238 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~k-Ia~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~-~~glG~~FLrhIer~~ 238 (335)
-|+|||+||||||||+|+|++++.. ++++|+||++|..|++..++.+++++||||+++..+. ...+-..+++++++++
T Consensus 5 ~V~ivG~pN~GKSsL~N~L~~~~~a~vs~~~gtTr~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~l~~~D 84 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVD 84 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999999999999995897033238898263442368984997899995898665145677899999998651365
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-HHHHHHHHHHHHHCC-CCEEEEECCCCCCHH
Q ss_conf 887520222211013466678998777667505988999974658998-899999999998629-948999888788999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS-DTLARKKNELATQCG-QVPFEFSSITGHGIP 316 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~-e~~~~~~~~l~~~~~-~~vi~ISA~tg~GI~ 316 (335)
+++||+|+++.....+.+ +.+.|.. ..+|.++|+||+|+++. +...+....+.+..+ .++++|||++|+|++
T Consensus 85 ~il~vvD~~~~~~~~d~~-i~~~l~~-----~~~~~iivlNK~Dl~~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~Gid 158 (168)
T cd04163 85 LVLFVVDASEPIGEGDEF-ILELLKK-----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVD 158 (168)
T ss_pred EEEEEEECCCCCCHHHHH-HHHHHHH-----CCCCEEEEEECEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf 589999789898667799-9999998-----0998599997887047877899999999961899968999777896999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780648|r 317 QILECLHDKI 326 (335)
Q Consensus 317 eL~~~I~e~L 326 (335)
+|++.|.+.|
T Consensus 159 ~L~~~i~~~L 168 (168)
T cd04163 159 ELLEEIVKYL 168 (168)
T ss_pred HHHHHHHHHC
T ss_conf 9999999539
No 26
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=100.00 E-value=2.6e-35 Score=233.92 Aligned_cols=162 Identities=27% Similarity=0.346 Sum_probs=135.3
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCH-HHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCC-CCCCHHHHHHHHHHHH
Q ss_conf 1124421677753035410145401-2121100000010266329868998226421247311-6775123443333357
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPK-IADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQ-GAGIGDRFLKHTERTH 238 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~k-Ia~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~-~~glG~~FLrhIer~~ 238 (335)
=|||||+||||||||+|+|.+.+.. |++.|+||+++..|++..++.+++++||||+++..+. ++.+-.+..+.+++++
T Consensus 10 ~VaivG~PNvGKSTL~N~l~~~k~siVS~k~~TTR~~i~gi~~~~~~q~i~iDTpGi~~~~~~l~~~~~~~~~~ai~~aD 89 (296)
T PRK00089 10 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVD 89 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999899988899999996896176149599872838999997997999998998667467787899999999997599
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCCHHH
Q ss_conf 8875202222110134666789987776675059889999746589988999999999986299-489998887889999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQ-VPFEFSSITGHGIPQ 317 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~-~vi~ISA~tg~GI~e 317 (335)
+++||+|++..- .++.+.+.+.|.. ..+|.++|+||+|+++.+++.+...++.+..+. ++|+|||++++|+++
T Consensus 90 lil~viD~~~~~-~~~d~~i~~~l~~-----~~kp~ilviNKiDlv~k~~l~~~~~~l~~~~~f~~if~iSA~~~~gi~~ 163 (296)
T PRK00089 90 LVLFVVDADEKI-GPGDEFILEKLKK-----VKTPVILVLNKIDLVDKEELLPLLEELSELMDFAEIVPISALKGDNVDE 163 (296)
T ss_pred EEEEEEECCCCC-CHHHHHHHHHHHH-----CCCCEEEEEEHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 999998578898-9889999998887-----4998899954788428988999999998537976599996778889899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999985
Q gi|254780648|r 318 ILECLHDKIFS 328 (335)
Q Consensus 318 L~~~I~e~L~~ 328 (335)
|++.|.+.+.+
T Consensus 164 L~~~l~~~lp~ 174 (296)
T PRK00089 164 LLDLIAKYLPE 174 (296)
T ss_pred HHHHHHHHCCC
T ss_conf 99999986798
No 27
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=100.00 E-value=3.4e-34 Score=227.14 Aligned_cols=159 Identities=25% Similarity=0.315 Sum_probs=123.8
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCH-HHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCC----HHHHHHHHH
Q ss_conf 1124421677753035410145401-21211000000102663298689982264212473116775----123443333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPK-IADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGI----GDRFLKHTE 235 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~k-Ia~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~gl----G~~FLrhIe 235 (335)
.|||||+||||||||+|+|++++.. +++|||||+++..+.+..++.+|+++||||+.+.++...++ -.+.+++++
T Consensus 4 ~V~ivG~pN~GKSTL~N~l~g~~~~~vs~~pgtTr~~~~~~~~~~~~~~~~vDtpGi~~~~~~~~~~e~~~~~~~~~~i~ 83 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIE 83 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEECCEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999899998999999983898444349999157332899999998899985788421344210688999999999998
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH--HHHHHHHHHHHC----CCCEEEEEC
Q ss_conf 35788752022221101346667899877766750598899997465899889--999999999862----994899988
Q gi|254780648|r 236 RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT--LARKKNELATQC----GQVPFEFSS 309 (335)
Q Consensus 236 r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~--~~~~~~~l~~~~----~~~vi~ISA 309 (335)
++++++||+|+++.-...+. .+.++|.. ..+|.++|+||+|+++++. ..+..+++.+.+ ..++++|||
T Consensus 84 ~~dvil~viDa~~~~~~~d~-~i~~~l~~-----~~~p~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ii~iSA 157 (174)
T cd01895 84 RADVVLLVIDATEGITEQDL-RIAGLILE-----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HCCCEEEEEECCCCCCHHHH-HHHHHHHH-----CCCCEEEEEECEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 42865899758989988999-99999998-----5998699985675267647789999999998734168992899974
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 8788999999999999
Q gi|254780648|r 310 ITGHGIPQILECLHDK 325 (335)
Q Consensus 310 ~tg~GI~eL~~~I~e~ 325 (335)
++|+|+++|++.|.+.
T Consensus 158 ~~g~Gi~~L~~~I~ei 173 (174)
T cd01895 158 LTGQGVDKLFDAIDEV 173 (174)
T ss_pred CCCCCHHHHHHHHHHH
T ss_conf 4798999999999986
No 28
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=100.00 E-value=1.3e-34 Score=229.75 Aligned_cols=150 Identities=23% Similarity=0.269 Sum_probs=123.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCH-HHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCH-HHHHHHHHHHHH
Q ss_conf 124421677753035410145401-212110000001026632986899822642124731167751-234433333578
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPK-IADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIG-DRFLKHTERTHV 239 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~k-Ia~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG-~~FLrhIer~~v 239 (335)
|+|||+||||||||+|+||+++.. |++|||||+++..+.+..++.+++++||||+.+.++.-...+ .+.+++++++++
T Consensus 4 ValvG~pN~GKStL~N~l~g~~~~ivs~~pgtTrd~~~~~~~~~~~~i~l~DTpG~~~~~~~~e~~~~~~~~~~i~~aDl 83 (157)
T cd04164 4 VVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADL 83 (157)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 99988999989999999968973343288984786326789539988999726775444578999999999863015767
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
Q ss_conf 87520222211013466678998777667505988999974658998899999999998629948999888788999999
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQIL 319 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~ 319 (335)
++||+|++.....++...+. .+.++|.++|+||+|++++++.. .+....++++|||++|+|+++|+
T Consensus 84 il~vvD~~~~~~~~~~~~~~--------~~~~~p~i~v~NKiDl~~~~~~~------~~~~~~~vi~ISA~~g~Gi~~L~ 149 (157)
T cd04164 84 VLFVIDASRGLDEEDLEILE--------LPADKPIIVVLNKSDLLPDSELL------SLLAGKPIIAISAKTGEGLDELK 149 (157)
T ss_pred EEEEEECCCCCCHHHHHHHH--------HHCCCCEEEEEECCCCCCCHHHH------HHCCCCCEEEEECCCCCCHHHHH
T ss_conf 99998898778888999998--------51479989999676014866679------85289977999852795999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780648|r 320 ECLHDK 325 (335)
Q Consensus 320 ~~I~e~ 325 (335)
+.|.+.
T Consensus 150 ~~I~e~ 155 (157)
T cd04164 150 EALLEL 155 (157)
T ss_pred HHHHHH
T ss_conf 999997
No 29
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=100.00 E-value=2.7e-34 Score=227.76 Aligned_cols=155 Identities=26% Similarity=0.334 Sum_probs=123.6
Q ss_pred EEEECCCCCCCEEEEEECCCCCH-HHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCC-CCCHHHHHHHHHHHHHH
Q ss_conf 24421677753035410145401-21211000000102663298689982264212473116-77512344333335788
Q gi|254780648|r 163 GIIGLPNAGKSTFLASVTRAKPK-IADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQG-AGIGDRFLKHTERTHVL 240 (335)
Q Consensus 163 glVG~PNaGKSTLln~ls~ak~k-Ia~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~-~glG~~FLrhIer~~vL 240 (335)
||||+||||||||+|+|++++.. |+++||||++++.+.+..++.+++++||||+++....- +-+-.+++.++++++++
T Consensus 1 aivG~pN~GKSsL~N~l~~~~~~ivs~~~gtTr~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~i~~ad~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEE
T ss_conf 90489998899999999588753540799935667899999999889998578755566067899999999999865907
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 75202222110134666789987776675059889999746589988999999999986299489998887889999999
Q gi|254780648|r 241 LHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILE 320 (335)
Q Consensus 241 l~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~ 320 (335)
+||+|++......+.+ +.+.|+. ..+|.++|+||+|+.+.+..... +.+....++++|||++++|+++|++
T Consensus 81 l~viDa~~~~~~~d~~-i~~~l~~-----~~kp~i~v~NK~D~~~~~~~~~~---~~~l~~~~~i~iSA~~g~Gid~L~~ 151 (157)
T cd01894 81 LFVVDGREGLTPADEE-IAKYLRK-----SKKPVILVVNKVDNIKEEDEAAE---FYSLGFGEPIPISAEHGRGIGDLLD 151 (157)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH-----HCCCEEEEEECCCCCCCHHHHHH---HHHCCCCCEEEEEEECCCCHHHHHH
T ss_conf 9999899999989999-9999998-----47980999978716586456999---9965999759999658949999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780648|r 321 CLHDKI 326 (335)
Q Consensus 321 ~I~e~L 326 (335)
.|.+.|
T Consensus 152 ~I~~~L 157 (157)
T cd01894 152 AILELL 157 (157)
T ss_pred HHHHHC
T ss_conf 999659
No 30
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=100.00 E-value=1.2e-33 Score=223.89 Aligned_cols=157 Identities=24% Similarity=0.290 Sum_probs=127.1
Q ss_pred EEECCCCCCCEEEEEECCCCC-HHHHHHHCCCEECCEEEEEC-CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 442167775303541014540-12121100000010266329-8689982264212473116775123443333357887
Q gi|254780648|r 164 IIGLPNAGKSTFLASVTRAKP-KIADYPFTTLYPNLGIVKEG-YKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 164 lVG~PNaGKSTLln~ls~ak~-kIa~ypFTT~~P~lGvv~~~-~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
|||+||||||||+|+|++++. .|+++||||+.|+.+.+... ..+++++||||+.+....+......++++++++++++
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~~~~~~~~D~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEE
T ss_conf 91979989999999995899610169899865645899995478659997279852223101689999999998689899
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH----HHHHCCCCEEEEECCCCCCHHH
Q ss_conf 520222211013466678998777667505988999974658998899999999----9986299489998887889999
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNE----LATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~----l~~~~~~~vi~ISA~tg~GI~e 317 (335)
||+|++......+.+.+ .++.. ..+|.++|+||+|++++++....... .......++++|||++++|+++
T Consensus 81 ~viD~~~~~~~~~~~~l-~~l~~-----~~~p~i~v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~ 154 (163)
T cd00880 81 FVVDADLRADEEEEKLL-ELLRE-----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEECCCCCCHHHHHHH-HHHHH-----HCCCEEEEEECEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 99878999755669999-99997-----1974278853420678789999999999998767998599997898979999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780648|r 318 ILECLHDKI 326 (335)
Q Consensus 318 L~~~I~e~L 326 (335)
|++.|.+.|
T Consensus 155 L~~~i~e~L 163 (163)
T cd00880 155 LREALIEAL 163 (163)
T ss_pred HHHHHHHHC
T ss_conf 999999519
No 31
>PRK11058 putative GTPase HflX; Provisional
Probab=99.97 E-value=2e-32 Score=216.42 Aligned_cols=166 Identities=25% Similarity=0.388 Sum_probs=134.5
Q ss_pred EECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEE-CCEEEEEECCCCCCCCCCCCCCCHHHH---HHHH
Q ss_conf 301124421677753035410145401212110000001026632-986899822642124731167751234---4333
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKE-GYKEFILADIPGIIKNAHQGAGIGDRF---LKHT 234 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~-~~~~~~i~D~PGlIegA~~~~glG~~F---LrhI 234 (335)
+.-||||||+|||||||+|+||++.+.++|+.|+||+|....+.. +..+++++||.|+|.+-- ..|-..| |.++
T Consensus 197 ~~~ValVGYTNAGKSTL~n~Lt~~~v~~~d~LFATLD~t~R~~~l~~~~~~lltDTVGFI~~LP--~~LveAF~sTLeEv 274 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLP--HDLVAAFKATLQET 274 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHCC--HHHHHHHHHHHHHH
T ss_conf 9769997357777899987775288763254501478620267869998699971506665198--99999999999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 33578875202222110134666789987776675059889999746589988999999999986299489998887889
Q gi|254780648|r 235 ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHG 314 (335)
Q Consensus 235 er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~G 314 (335)
..+++|+||||+|+++..++++.+.+.|+.. ...++|.|+|+||+|++++.... ........+ ..++|||++++|
T Consensus 275 ~~ADlLLhVvD~S~p~~~~q~~~v~~vL~el--g~~~~p~i~V~NKiD~~~~~~~~--~~~~~~~~p-~~V~iSA~tg~G 349 (426)
T PRK11058 275 RQATLLLHVIDAADVRVQENIEAVNTVLEEI--DAHEIPTLLVMNKIDMLDDFEPR--IDRDEENKP-IRVWLSAQTGAG 349 (426)
T ss_pred HCCCEEEEEEECCCCCHHHHHHHHHHHHHHC--CCCCCCEEEEEECCCCCCCHHHH--HHHHHCCCC-CEEEEECCCCCC
T ss_conf 6398899998499937999999999999975--99999779999770238964455--666533998-779997899989
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999985452
Q gi|254780648|r 315 IPQILECLHDKIFSIRG 331 (335)
Q Consensus 315 I~eL~~~I~e~L~~~r~ 331 (335)
++.|.+.|.+.+.....
T Consensus 350 i~~L~~~I~~~L~~~~~ 366 (426)
T PRK11058 350 IPLLFQALTERLSGEVA 366 (426)
T ss_pred HHHHHHHHHHHCCCCCE
T ss_conf 99999999987033768
No 32
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.97 E-value=2.8e-32 Score=215.48 Aligned_cols=157 Identities=21% Similarity=0.307 Sum_probs=116.6
Q ss_pred CEEEEECCCCCCCEEEEEECCCC--CHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCC-CCCCC-----CCCHHHHHH
Q ss_conf 11244216777530354101454--01212110000001026632986899822642124-73116-----775123443
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAK--PKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIK-NAHQG-----AGIGDRFLK 232 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak--~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIe-gA~~~-----~glG~~FLr 232 (335)
.|||||+||||||||+|+|++.+ +.++++|+||+.++... -+.+++++||||+.. ..+.. ..+-.+||+
T Consensus 1 eIaivG~pN~GKSTL~N~L~~~~~~~~vs~~~gtTr~i~~~~---~~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~l~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFN---VNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEEEEE---ECCEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 989998999999999999968996278607897785205885---38779999657840101687799999999999998
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-----CCCEEEE
Q ss_conf 33335788752022221101346667899877766750598899997465899889999999999862-----9948999
Q gi|254780648|r 233 HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQC-----GQVPFEF 307 (335)
Q Consensus 233 hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~-----~~~vi~I 307 (335)
+.+.++++++|+|++......+.+ +.+.|.. ..+|.++|+||+|++++++..+...++.+.. ..++++|
T Consensus 78 ~~~~~~~vi~viD~~~~~~~~d~~-i~~~l~~-----~~kp~iiVlNKiDlv~~~~~~~~~~~~~~~l~~~~~~~~ii~i 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLE-MLDWLEE-----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred HHHHHCEEEEEEECCCCCCHHHHH-HHHHHHH-----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 406334999999632237486899-9999987-----6998799998675378778999999999987421799839999
Q ss_pred ECCCCCCHHHHHHHHHHHH
Q ss_conf 8887889999999999999
Q gi|254780648|r 308 SSITGHGIPQILECLHDKI 326 (335)
Q Consensus 308 SA~tg~GI~eL~~~I~e~L 326 (335)
||++|+|+++|++.|.+.|
T Consensus 152 SA~~g~gi~~L~~~I~~~L 170 (170)
T cd01876 152 SSLKGQGIDELRALIEKWL 170 (170)
T ss_pred ECCCCCCHHHHHHHHHHHC
T ss_conf 8899977999999999859
No 33
>KOG1491 consensus
Probab=99.97 E-value=5.4e-32 Score=213.79 Aligned_cols=169 Identities=30% Similarity=0.461 Sum_probs=129.0
Q ss_pred CCCCCCCCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE-------------
Q ss_conf 0136775302689999976301124421677753035410145401212110000001026632986-------------
Q gi|254780648|r 140 YANPGILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK------------- 206 (335)
Q Consensus 140 ~~~~G~~G~~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~------------- 206 (335)
.+..|.+|.... +|+||+||+|||||+|+||+++...|||||||++|+.+.|...+.
T Consensus 11 ~~~~gR~~~~lk----------iGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~ 80 (391)
T KOG1491 11 KVLLGRDGNNLK----------IGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKS 80 (391)
T ss_pred CCCCCCCCCCCE----------EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCCEEECCCHHHHHHHHHCCCCC
T ss_conf 500057887640----------2575179874688999986079885678740256341122268258899988528766
Q ss_pred ----EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC----------CHHHHHHHHHHHHHHHHHH----
Q ss_conf ----8998226421247311677512344333335788752022221----------1013466678998777667----
Q gi|254780648|r 207 ----EFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALEE----------NVQAAYQCILDELSAYNSE---- 268 (335)
Q Consensus 207 ----~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl~VVD~s~~----------d~~~~~~~I~~EL~~y~~~---- 268 (335)
.+++.|++||+.|||+|.|||..||-||..++.|.|||+++++ ||+.|+++|.+||...+.+
T Consensus 81 ~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k 160 (391)
T KOG1491 81 KVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEK 160 (391)
T ss_pred EEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 12335789862123567645767407777765520311688874176530000588882252899999999968888888
Q ss_pred -------------------------------------------------------------HCCCCEEEEEECCCCCCHH
Q ss_conf -------------------------------------------------------------5059889999746589988
Q gi|254780648|r 269 -------------------------------------------------------------LRKKIEIVGLSQIDTVDSD 287 (335)
Q Consensus 269 -------------------------------------------------------------L~~Kp~IIVlNKiDl~~~e 287 (335)
|..||.+.++|++|.....
T Consensus 161 ~~e~~~k~~~~~~~~~~~~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~dy~r 240 (391)
T KOG1491 161 RLEKLEKKHKRTKSNLETKQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSEHDYAR 240 (391)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
T ss_conf 88777666532567677887777776799999998604888763100587788998876333038669998368650266
Q ss_pred HHHHHHH---HHHHHC--CCCEEEEECCCCCCHHHH
Q ss_conf 9999999---999862--994899988878899999
Q gi|254780648|r 288 TLARKKN---ELATQC--GQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 288 ~~~~~~~---~l~~~~--~~~vi~ISA~tg~GI~eL 318 (335)
...+.+. ++.+.. +..+++.|+.-..-+.++
T Consensus 241 ~knk~l~~i~~w~~~~~~g~~~i~fs~~~e~ql~~~ 276 (391)
T KOG1491 241 KKNKKLPKIKEWVDEVSPGDVVIVFSAAFESQLFEL 276 (391)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCC
T ss_conf 777877665445641488873887429998776214
No 34
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.97 E-value=6.4e-31 Score=207.26 Aligned_cols=158 Identities=27% Similarity=0.457 Sum_probs=128.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCC----CHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010266329868998226421247311677----512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAG----IGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~g----lG~~FLrhIer~ 237 (335)
|-+-|+||||||||+++||+|+|+||+|||||..-++|.+..++.+++++|||||.+..-+..+ -.+--|+||.
T Consensus 171 ivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~-- 248 (346)
T COG1084 171 IVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLA-- 248 (346)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHHCHHHHHHHHHHHHHC--
T ss_conf 898569987589999887548976678885336546765504870589842886457885773689999999999742--
Q ss_pred HHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf 7887520222211--01346667899877766750598899997465899889999999999862994899988878899
Q gi|254780648|r 238 HVLLHIVSALEEN--VQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGI 315 (335)
Q Consensus 238 ~vLl~VVD~s~~d--~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI 315 (335)
++++|++|.|+.+ +++....|.+|+.. +..+|.++|+||+|+.+.+.+.+....+..........+|+..+.++
T Consensus 249 ~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~----~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (346)
T COG1084 249 GVILFLFDPSETCGYSLEEQISLLEEIKE----LFKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGL 324 (346)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHH----HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHH
T ss_conf 85899976850028999999999999998----53887699974101246667899999987632655431354300017
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780648|r 316 PQILECLHDK 325 (335)
Q Consensus 316 ~eL~~~I~e~ 325 (335)
+.+.+.+...
T Consensus 325 d~~~~~v~~~ 334 (346)
T COG1084 325 DKLREEVRKT 334 (346)
T ss_pred HHHHHHHHHH
T ss_conf 8899999887
No 35
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.97 E-value=4.6e-30 Score=202.09 Aligned_cols=164 Identities=21% Similarity=0.272 Sum_probs=128.6
Q ss_pred CEEEEECCCCCCCEEEEEECCC-CCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCH----HHHHHHHH
Q ss_conf 1124421677753035410145-401212110000001026632986899822642124731167751----23443333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRA-KPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIG----DRFLKHTE 235 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~a-k~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG----~~FLrhIe 235 (335)
-||+||+||||||||+|+|.+. +.-|++-|.||++++--.+.++++.|.++||+||-..+....++- .+-++.|+
T Consensus 454 rIAIIGRPNVGKSTLiN~LlgeeR~IVs~iaGTTRDsId~~~~~~g~~~~lIDTAGiRkk~k~~~~iE~~S~~rt~~aI~ 533 (714)
T PRK09518 454 RVALVGRPNVGKSSLLNQLTREERAVVNDLAGTTRDPVDEIVNIDGKDWLFVDTAGIRRKQKKLTGAEYYASLRTQAAIE 533 (714)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECEEEEEEEECCEEEEEEECHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 58886699887899999996897588568898502305567999997899998600152443254322799999999886
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC----CCEEEEECCC
Q ss_conf 357887520222211013466678998777667505988999974658998899999999998629----9489998887
Q gi|254780648|r 236 RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCG----QVPFEFSSIT 311 (335)
Q Consensus 236 r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~----~~vi~ISA~t 311 (335)
||++.++|+|+++.-..+|.+++.. ... ..||.|||+||+|+++++......+++...+. .++++|||++
T Consensus 534 ~adVvllviDA~~git~QD~~Ia~~-i~~-----~gk~~IivvNKWDLv~~~~~~~~~~~i~~~l~~~~~apiv~iSA~~ 607 (714)
T PRK09518 534 RCELALILFDASQPISEQDLRVMSM-AVD-----AGRALVLAFNKWDLMDEFRRQRLEREIDTEFDRVMWAERVNISAKT 607 (714)
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHH-HHH-----HCCCEEEEEECHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 5889999986776752899999999-998-----5993799996143068668999999999756368999889996678
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 8899999999999998545
Q gi|254780648|r 312 GHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 312 g~GI~eL~~~I~e~L~~~r 330 (335)
|.|++.|++.+.+...+..
T Consensus 608 g~~v~kl~~~i~~~~~~~~ 626 (714)
T PRK09518 608 GRHTNRLARAMDKALESWD 626 (714)
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 9788999999999999960
No 36
>PRK04213 GTP-binding protein; Provisional
Probab=99.97 E-value=8.3e-31 Score=206.57 Aligned_cols=170 Identities=21% Similarity=0.321 Sum_probs=114.4
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCC--CCCCCCCC--CCHHHHHH---
Q ss_conf 011244216777530354101454012121100000010266329868998226421--24731167--75123443---
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGI--IKNAHQGA--GIGDRFLK--- 232 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGl--IegA~~~~--glG~~FLr--- 232 (335)
.-|||||+||||||||||+|++++++|+++|+||++++.. +..+++++||||+ +.+.++.. .+....++
T Consensus 2 P~VaivGRpNVGKSTL~N~L~g~k~~vs~~pg~Tr~~~~~----~~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~~~~ 77 (195)
T PRK04213 2 PEIIFVGRSNVGKSTLIRALTGKKVRVGKRPGVTLKPNEY----DWGDFILVDLPGFGFMSGVPKKVQERIKDEIVHYIE 77 (195)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEE----ECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8799976999889999999968985134899648734588----508899999999622245888899999999999999
Q ss_pred -HHHHHHHHHHHCCCCCC-CHHH-----HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH-HHHHHHHHHHHH-----
Q ss_conf -33335788752022221-1013-----4666789987776675059889999746589988-999999999986-----
Q gi|254780648|r 233 -HTERTHVLLHIVSALEE-NVQA-----AYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD-TLARKKNELATQ----- 299 (335)
Q Consensus 233 -hIer~~vLl~VVD~s~~-d~~~-----~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e-~~~~~~~~l~~~----- 299 (335)
+.++++++++|||++.. +..+ ....+..|+-.|-.+ ..+|.++|+||+|++... +....+.+....
T Consensus 78 ~~~~~~~~~~~vvD~~~~~~~~dr~~~~~~~~~D~~i~~~l~~-~~~p~ilv~NKiD~i~~~~~~l~~i~e~~~~~~~~~ 156 (195)
T PRK04213 78 DNADRIAAAVLVVDGKSFPEIIERWESRGEIPIDVEMFDFLRE-LGINPIVAVNKMDKIKNSEEVLDEIAERLGLYPPWR 156 (195)
T ss_pred HHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCEEEEEECHHHCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 9885178999999578654421123445677778999999987-499879999873305877888999999982576156
Q ss_pred -CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -299489998887889999999999999854523039
Q gi|254780648|r 300 -CGQVPFEFSSITGHGIPQILECLHDKIFSIRGENEF 335 (335)
Q Consensus 300 -~~~~vi~ISA~tg~GI~eL~~~I~e~L~~~r~e~Ef 335 (335)
....++++||+++ |+++|++.|.+.|.+.+.++=|
T Consensus 157 ~~~~~iv~iSakk~-Gid~L~~~I~~~L~E~~~~~~~ 192 (195)
T PRK04213 157 QWLDIIAPISAKKG-GIEALKGLINKRLREFKRDDLF 192 (195)
T ss_pred HCCCEEEEEECCCC-CHHHHHHHHHHHCHHHCCCHHH
T ss_conf 56987999845779-9999999999967553741065
No 37
>PRK00454 engB GTPase EngB; Reviewed
Probab=99.96 E-value=1.4e-30 Score=205.22 Aligned_cols=159 Identities=16% Similarity=0.244 Sum_probs=112.5
Q ss_pred ECEEEEECCCCCCCEEEEEECCCC--CHHHHHHHCCCEECCEEEEECCEEEEEECCCCC-CCCCCC-CC----CCHHHHH
Q ss_conf 011244216777530354101454--012121100000010266329868998226421-247311-67----7512344
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAK--PKIADYPFTTLYPNLGIVKEGYKEFILADIPGI-IKNAHQ-GA----GIGDRFL 231 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak--~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGl-IegA~~-~~----glG~~FL 231 (335)
.-|||||+||||||||+|+|++.+ ..++++|.||++-+. ...+.+++++||||+ ....+. .+ .+-..||
T Consensus 25 p~VaivGrpNvGKSTL~N~L~g~k~~a~vs~~pgtTr~i~~---~~~~~~~~lvDtpGyG~a~~~~~~~~~~~~~i~~yl 101 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINF---FEVNDGLRLVDLPGYGYAKVSKEEKEKWQKLIEEYL 101 (196)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEE---EECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 68999848988899999998689736997478886079888---761883389937997413277878889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-----CCCEEE
Q ss_conf 333335788752022221101346667899877766750598899997465899889999999999862-----994899
Q gi|254780648|r 232 KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQC-----GQVPFE 306 (335)
Q Consensus 232 rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~-----~~~vi~ 306 (335)
+.-+..+.+++|||+...-...|.++ .+.|.. ..+|.++|+||+|+++..+..+...++.+.. ..++++
T Consensus 102 ~~~~~l~~villIDa~~g~~~~D~~i-~~~l~~-----~~~p~iivlNKiD~l~~~~~~~~~~~i~~~l~~~~~~~~ii~ 175 (196)
T PRK00454 102 QKRENLKGVVLLIDSRHPLKELDLEM-IEWLKE-----AGIPVLIVLTKADKLKKGERKKLLKKVKKALARFAADPEVLL 175 (196)
T ss_pred HHHHCCCEEEEEEECCCCCCHHHHHH-HHHHHH-----CCCCCEEEEECCHHCCHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 96233363899997165898889999-999986-----277859999872516978999999999999761258982899
Q ss_pred EECCCCCCHHHHHHHHHHHHH
Q ss_conf 988878899999999999998
Q gi|254780648|r 307 FSSITGHGIPQILECLHDKIF 327 (335)
Q Consensus 307 ISA~tg~GI~eL~~~I~e~L~ 327 (335)
|||++++|+++|++.|.+.|.
T Consensus 176 ISA~~g~GI~eL~~~I~k~Lk 196 (196)
T PRK00454 176 FSSLKKTGIDELRAAIAKWLK 196 (196)
T ss_pred EECCCCCCHHHHHHHHHHHHC
T ss_conf 969999798999999999859
No 38
>COG1159 Era GTPase [General function prediction only]
Probab=99.96 E-value=3.6e-30 Score=202.73 Aligned_cols=158 Identities=28% Similarity=0.379 Sum_probs=126.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHH-HHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHH----HHHHHH
Q ss_conf 1244216777530354101454012-12110000001026632986899822642124731167751234----433333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKI-ADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRF----LKHTER 236 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kI-a~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~F----LrhIer 236 (335)
||+||+||||||||+|+|-++|..| ++-|.||+++..|++..++.|++++||||+.+..+ -||... ...+..
T Consensus 9 VaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~---~l~~~m~~~a~~sl~d 85 (298)
T COG1159 9 VAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH---ALGELMNKAARSALKD 85 (298)
T ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHEEEEEECCCCEEEEEECCCCCCCCH---HHHHHHHHHHHHHHCC
T ss_conf 9998699876899998985682575159853114421479986984499984898887651---7889999999987245
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCC-CCEEEEECCCCCC
Q ss_conf 5788752022221101346667899877766750598899997465899889-9999999998629-9489998887889
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCG-QVPFEFSSITGHG 314 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~-~~vi~ISA~tg~G 314 (335)
+++++||||+...--. .-+.+.+.|+. .+.|.++++||+|...++. +....+.+....+ .+++||||+++.|
T Consensus 86 vDlilfvvd~~~~~~~-~d~~il~~lk~-----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 86 VDLILFVVDADEGWGP-GDEFILEQLKK-----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred CCEEEEEEECCCCCCC-CHHHHHHHHHH-----CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 7599999866656891-07999997764-----38986999984025784778999999998508830179951015678
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999985
Q gi|254780648|r 315 IPQILECLHDKIFS 328 (335)
Q Consensus 315 I~eL~~~I~e~L~~ 328 (335)
++.|++.+.+.|.+
T Consensus 160 ~~~L~~~i~~~Lpe 173 (298)
T COG1159 160 VDTLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 89999999985888
No 39
>COG2262 HflX GTPases [General function prediction only]
Probab=99.96 E-value=5.4e-30 Score=201.66 Aligned_cols=166 Identities=27% Similarity=0.411 Sum_probs=133.5
Q ss_pred EECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEEC-CEEEEEECCCCCCCCCCCCCCCHHHH---HHHH
Q ss_conf 3011244216777530354101454012121100000010266329-86899822642124731167751234---4333
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEG-YKEFILADIPGIIKNAHQGAGIGDRF---LKHT 234 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~-~~~~~i~D~PGlIegA~~~~glG~~F---LrhI 234 (335)
+--|+||||.|||||||+|+||++..-++|-.|+|++|..-.+... +.+++++||-|+|..- -.-|--.| |..+
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~L--P~~LV~AFksTLEE~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDL--PHPLVEAFKSTLEEV 269 (411)
T ss_pred CCEEEEEEECCCCHHHHHHHHHCCCEECCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCC--CHHHHHHHHHHHHHH
T ss_conf 975898732344499999887245713046664210574048980799649986575671559--867999999989876
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 33578875202222110134666789987776675059889999746589988999999999986299489998887889
Q gi|254780648|r 235 ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHG 314 (335)
Q Consensus 235 er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~G 314 (335)
..+|+|+||||+|+++..++++...+.|+..+ ..++|+|+|+||+|++..+.. ...+....+ .+++|||++++|
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~--~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~-~~v~iSA~~~~g 343 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIG--ADEIPIILVLNKIDLLEDEEI---LAELERGSP-NPVFISAKTGEG 343 (411)
T ss_pred HCCCEEEEEEECCCHHHHHHHHHHHHHHHHCC--CCCCCEEEEEECCCCCCCHHH---HHHHHHCCC-CEEEEEECCCCC
T ss_conf 22777999740688518999999999999748--899978999764101573222---345663489-748998066759
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999854523
Q gi|254780648|r 315 IPQILECLHDKIFSIRGE 332 (335)
Q Consensus 315 I~eL~~~I~e~L~~~r~e 332 (335)
++.|++.|.+.+.....+
T Consensus 344 l~~L~~~i~~~l~~~~~~ 361 (411)
T COG2262 344 LDLLRERIIELLSGLRTE 361 (411)
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 899999999986312433
No 40
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.96 E-value=3.6e-30 Score=202.71 Aligned_cols=164 Identities=21% Similarity=0.260 Sum_probs=124.9
Q ss_pred ECEEEEECCCCCCCEEEEEECCC-CCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCC----HHHHHHHH
Q ss_conf 01124421677753035410145-40121211000000102663298689982264212473116775----12344333
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRA-KPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGI----GDRFLKHT 234 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~a-k~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~gl----G~~FLrhI 234 (335)
-+||+||+||||||||+|+|.+. +.=+.+-|.||+++.---++.+++.|+++||.|+-..+.-..++ -.+-++.|
T Consensus 179 ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI 258 (444)
T COG1160 179 IKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAI 258 (444)
T ss_pred EEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHH
T ss_conf 08999927878705888775068259845999862203312589988189999877877466412426887505467678
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH--HHHHHHHHHHHHHCC----CCEEEEE
Q ss_conf 3357887520222211013466678998777667505988999974658998--899999999998629----9489998
Q gi|254780648|r 235 ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS--DTLARKKNELATQCG----QVPFEFS 308 (335)
Q Consensus 235 er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~--e~~~~~~~~l~~~~~----~~vi~IS 308 (335)
+++++.+.|+|+++....+|.++..--.+ ..|+.+||+||+|+++. ..+.+..+++...++ .++++||
T Consensus 259 ~~a~vvllviDa~~~~~~qD~~ia~~i~~------~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 259 ERADVVLLVIDATEGISEQDLRIAGLIEE------AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred HHCCEEEEEEECCCCCHHHHHHHHHHHHH------CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 65688999998887836889999999997------589749999753257851667999999999872213677279997
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 887889999999999999854
Q gi|254780648|r 309 SITGHGIPQILECLHDKIFSI 329 (335)
Q Consensus 309 A~tg~GI~eL~~~I~e~L~~~ 329 (335)
|+++.++++|++.+.+.....
T Consensus 333 A~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred ECCCCCHHHHHHHHHHHHHHH
T ss_conf 047877278899999999986
No 41
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=99.96 E-value=4.7e-30 Score=202.05 Aligned_cols=164 Identities=19% Similarity=0.265 Sum_probs=128.2
Q ss_pred CEEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCH----HHHHHHHH
Q ss_conf 11244216777530354101454-01212110000001026632986899822642124731167751----23443333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIG----DRFLKHTE 235 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG----~~FLrhIe 235 (335)
-||+||+||||||||+|+|.+.. .-+.+-|.||++++-..+.+++..|+++||+|+...+.-..++- .+-|+.|+
T Consensus 213 rIAIvGrPNvGKStL~N~llg~~r~ivs~~~GTTRDsI~~~~~~~~~~~~liDTAGiRrk~kv~~~iE~~s~~rtl~aI~ 292 (474)
T PRK03003 213 RVALVGKPNVGKSSLLNKLAGEERSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRRKVGQASGHEFYASLRTHAAID 292 (474)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 79998089987889999985897567458998515440589999998999998987663553343145899999999987
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH----CCCCEEEEECCC
Q ss_conf 3578875202222110134666789987776675059889999746589988999999999986----299489998887
Q gi|254780648|r 236 RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQ----CGQVPFEFSSIT 311 (335)
Q Consensus 236 r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~----~~~~vi~ISA~t 311 (335)
+|++.++|+|+++.-..+|.+++.. +.. ..|+.|+++||+|+++.+......+++... ...++++|||++
T Consensus 293 ~advvilviDa~egit~QD~~Ia~~-v~~-----~gk~~IivvNKwDLv~~~~~~~~~~~i~~~l~~~~~~piv~ISA~~ 366 (474)
T PRK03003 293 AAEVAVVLIDASEPLTEQDQRVLSM-VIE-----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVRWAPRVNISAKT 366 (474)
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHH-HHH-----HCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 3355799985465874999999999-998-----0995799997144168678999999998645544898569998104
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 8899999999999998545
Q gi|254780648|r 312 GHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 312 g~GI~eL~~~I~e~L~~~r 330 (335)
+.|++.|++.+.+...+.+
T Consensus 367 g~~i~kL~~~i~~v~~~~~ 385 (474)
T PRK03003 367 GRAVQKLVPALETALESWD 385 (474)
T ss_pred CCCHHHHHHHHHHHHHHHC
T ss_conf 8798999999999999964
No 42
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=99.96 E-value=9e-30 Score=200.32 Aligned_cols=164 Identities=24% Similarity=0.304 Sum_probs=125.7
Q ss_pred CEEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCH----HHHHHHHH
Q ss_conf 11244216777530354101454-01212110000001026632986899822642124731167751----23443333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIG----DRFLKHTE 235 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG----~~FLrhIe 235 (335)
-||+||+||||||||+|+|.+.. .-+++-|+||+++....+.+.+..|.++||||+...+.-..++- .+-|+.|+
T Consensus 174 riaiiGrpNvGKStl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k~~~~iE~~s~~~t~~~i~ 253 (438)
T PRK00093 174 KIAIIGRPNVGKSTLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRRGKVTEGIEKYSVIRTLKAIE 253 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 59995588865567888765433320479998511232679998996799998989876564213788999999999986
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH--HHHHHHHHHHHC----CCCEEEEEC
Q ss_conf 35788752022221101346667899877766750598899997465899889--999999999862----994899988
Q gi|254780648|r 236 RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT--LARKKNELATQC----GQVPFEFSS 309 (335)
Q Consensus 236 r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~--~~~~~~~l~~~~----~~~vi~ISA 309 (335)
+|++.++|+|+++.-..+|..++ +.+.. ..||.++|+||+|+++.+. ..+..+++...+ ..++++|||
T Consensus 254 ~~dvvilviDa~~~~~~qD~~i~-~~i~~-----~gk~~ii~vNKwDLv~~~~~~~~~~~~~i~~~l~~~~~~pIvfiSA 327 (438)
T PRK00093 254 RADVVLLVIDATEGITEQDLRIA-GLALE-----AGRALVIVVNKWDLVEKDSKTMEEVKEELRRRLPFLDFAPIVFISA 327 (438)
T ss_pred HCCEEEEEEECCCCCCHHHHHHH-HHHHH-----CCCCEEEEEECHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 44669999976658848889999-99998-----1996699997022256638999999999997561258987799851
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 878899999999999998545
Q gi|254780648|r 310 ITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 310 ~tg~GI~eL~~~I~e~L~~~r 330 (335)
+++.|++.|++.+.+...+..
T Consensus 328 ~~g~gi~kl~~~i~~v~~~~~ 348 (438)
T PRK00093 328 LTGQGVDKLFESILEAYESAN 348 (438)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 477799999999999999960
No 43
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.96 E-value=7.2e-30 Score=200.90 Aligned_cols=164 Identities=26% Similarity=0.294 Sum_probs=126.5
Q ss_pred CEEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCH----HHHHHHHH
Q ss_conf 11244216777530354101454-01212110000001026632986899822642124731167751----23443333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIG----DRFLKHTE 235 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG----~~FLrhIe 235 (335)
-||+||+||||||||+|+|.+.+ .-+++-|+||+++....+.+.+.+|.++||||+...+.-...+- .+-++.|+
T Consensus 174 riaivGrPNvGKSTl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k~~~~~e~~s~~~t~~~i~ 253 (429)
T TIGR03594 174 KIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGIEKYSVLRTLKAIE 253 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 69997488765467777765433321479998631026879999990899998988763664230477999999999987
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-HHHHHHHHHHHHHHC----CCCEEEEECC
Q ss_conf 35788752022221101346667899877766750598899997465899-889999999999862----9948999888
Q gi|254780648|r 236 RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVD-SDTLARKKNELATQC----GQVPFEFSSI 310 (335)
Q Consensus 236 r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~-~e~~~~~~~~l~~~~----~~~vi~ISA~ 310 (335)
+|+++++|+|+++.-..+|.. |.+.+.. ..||.++|+||+|+++ .....+..+++...+ ..++++|||+
T Consensus 254 ~~dvvil~iD~~~~~~~qD~~-i~~~i~~-----~~k~~ii~~NK~Dli~~~~~~~~~~~~i~~~l~~~~~~pI~fiSA~ 327 (429)
T TIGR03594 254 RADVVLLVLDATEGITEQDLR-IAGLALE-----AGKALIIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISAL 327 (429)
T ss_pred HCCEEEEEEECCCCCCHHHHH-HHHHHHH-----CCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 447799999766588488899-9998987-----3997699997223037999999999999985623689868997345
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 78899999999999998545
Q gi|254780648|r 311 TGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 311 tg~GI~eL~~~I~e~L~~~r 330 (335)
++.|++.|++.+.+......
T Consensus 328 ~g~gi~kl~~~i~~~~~~~~ 347 (429)
T TIGR03594 328 TGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred CCCCHHHHHHHHHHHHHHHH
T ss_conf 77899999999999999972
No 44
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.96 E-value=7.6e-29 Score=194.68 Aligned_cols=160 Identities=26% Similarity=0.301 Sum_probs=123.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCH-HHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCC-CCCCHHHHHHHHHHHHH
Q ss_conf 124421677753035410145401-2121100000010266329868998226421247311-67751234433333578
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPK-IADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQ-GAGIGDRFLKHTERTHV 239 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~k-Ia~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~-~~glG~~FLrhIer~~v 239 (335)
|+|||+||||||||+|+|++.+.. |++.|.||++++.+.+..++.+|.++||||+.....+ .+-+-.+-+..|+.|++
T Consensus 2 VaIvGrpNVGKStLfN~L~~~~~aIv~~~~G~TRD~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~q~~~ai~~aDl 81 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADV 81 (429)
T ss_pred EEEECCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCE
T ss_conf 89999999878999999878861761598998877337999999907999989898987437899999999999986799
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
Q ss_conf 87520222211013466678998777667505988999974658998899999999998629948999888788999999
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQIL 319 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~ 319 (335)
++||||+.+.-..+|++. .+.|++ ..||.++|+||+|....+ ....++.+..-.++++|||.++.|+++|+
T Consensus 82 IlfVvD~~~git~~D~~i-~~~Lrk-----~~k~vilviNK~D~~~~~---~~~~ef~~LG~~~~i~iSA~h~~Gi~~L~ 152 (429)
T TIGR03594 82 ILFVVDGREGLTPEDEEI-AKWLRK-----SGKPVILVANKIDGKKED---AVAAEFYSLGFGEPIPISAEHGRGIGDLL 152 (429)
T ss_pred EEEEEECCCCCCHHHHHH-HHHHHH-----CCCCEEEEEECCCCCCHH---HHHHHHHHHCCCCEEEEEECCCCCHHHHH
T ss_conf 999985776898679999-999987-----199789999834675314---56999998368986887420467999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999998545
Q gi|254780648|r 320 ECLHDKIFSIR 330 (335)
Q Consensus 320 ~~I~e~L~~~r 330 (335)
+.|.+.+.+..
T Consensus 153 ~~i~~~l~~~~ 163 (429)
T TIGR03594 153 DAILELLPEEE 163 (429)
T ss_pred HHHHHHCCCCC
T ss_conf 99996588665
No 45
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=99.96 E-value=6.2e-29 Score=195.24 Aligned_cols=163 Identities=17% Similarity=0.219 Sum_probs=124.7
Q ss_pred EECEEEEECCCCCCCEEEEEECCCCCHH-HHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCC-CCCCHHHHHHHHHH
Q ss_conf 3011244216777530354101454012-121100000010266329868998226421247311-67751234433333
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVTRAKPKI-ADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQ-GAGIGDRFLKHTER 236 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls~ak~kI-a~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~-~~glG~~FLrhIer 236 (335)
+.=|||||+||||||||+|+|++.+..| ++.|.||++.+.+.+...+.+|+++||||+-...+. .+-+-.+-...|+.
T Consensus 38 lPiVaIvGRPNVGKStLFNrL~~~~~AIV~d~pGvTRDr~~~~~~~~~~~f~lvDTgG~~~~~~~~~~~i~~q~~~ai~e 117 (474)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYDAEWNGRRFVVQDTGGWEPDAKGLQALVAEQAEVAMRT 117 (474)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99899989999888999999868863880598998808636899999928999979999997478999999999999986
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 57887520222211013466678998777667505988999974658998899999999998629948999888788999
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
|++++||||+.+.-...|+++ .+.|++ .+||.++|+||+|....+. ...++.+..-.++++|||.+|.|+.
T Consensus 118 aD~IlfVvD~~~glt~~D~ei-a~~LRk-----~~kpviLVvNK~D~~~~~~---~~~efy~LGf~~~i~ISA~Hg~Gi~ 188 (474)
T PRK03003 118 ADAVLFVVDATVGATATDEAV-ARLLRR-----SGKPVFLAANKVDSERGEA---DAAALWSLGLGEPHPVSALHGRGVA 188 (474)
T ss_pred CCEEEEEEECCCCCCHHHHHH-HHHHHH-----CCCCEEEEEECCCCCCHHH---HHHHHHHHCCCCEEEEEHHCCCCHH
T ss_conf 999999996898988789999-999875-----3997799867556621023---4899997579986996020378979
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999998545
Q gi|254780648|r 317 QILECLHDKIFSIR 330 (335)
Q Consensus 317 eL~~~I~e~L~~~r 330 (335)
+|++.|.+.+.+..
T Consensus 189 dLld~i~~~l~~~~ 202 (474)
T PRK03003 189 DLLDAVLAALPEVP 202 (474)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999997487766
No 46
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.96 E-value=5.3e-30 Score=201.73 Aligned_cols=155 Identities=21% Similarity=0.338 Sum_probs=126.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCC--CCCCC----CCCHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001026632986899822642124--73116----775123443333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIK--NAHQG----AGIGDRFLKHTE 235 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIe--gA~~~----~glG~~FLrhIe 235 (335)
|||+|.||+|||||+|+||+++.+|+|||.+|.+...|.++.+++++.++|+||+.. ..|+. .-.-.+||. =+
T Consensus 6 IALvGNPN~GKSTLFN~LTG~~q~VgNwPGvTVEkk~G~~~~~~~~~~ivDLPG~YSL~~~S~e~s~dE~Var~~ll-~~ 84 (772)
T PRK09554 6 IGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL-SG 84 (772)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH-CC
T ss_conf 99888998789999999868998357899764742389999689469999799778699999777730899999861-39
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf 35788752022221101346667899877766750598899997465899889999999999862994899988878899
Q gi|254780648|r 236 RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGI 315 (335)
Q Consensus 236 r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI 315 (335)
+.|+++.|+|+++- ..++....+-++ ..+|.++++|++|..++....-..+.+.+.++.||+++||.+++|+
T Consensus 85 ~pDvvvnVvDAtnL--eRnLyLt~QllE------lg~PvVvaLNM~D~A~~~Gi~ID~~~Ls~~LGvPVV~~~A~~g~Gi 156 (772)
T PRK09554 85 DADLLINVVDASNL--ERNLYLTLQLLE------LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGI 156 (772)
T ss_pred CCCEEEEEEECCCH--HHHHHHHHHHHH------CCCCEEEEEECHHHHHHCCCEECHHHHHHHHCCCEEEEEECCCCCH
T ss_conf 99899998016875--442899999997------4999899987799898877932899999985899899982788799
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780648|r 316 PQILECLHDK 325 (335)
Q Consensus 316 ~eL~~~I~e~ 325 (335)
++|++.+.+.
T Consensus 157 ~eL~~ai~~~ 166 (772)
T PRK09554 157 EALKLAIDRY 166 (772)
T ss_pred HHHHHHHHHH
T ss_conf 9999999975
No 47
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=99.96 E-value=1.2e-28 Score=193.56 Aligned_cols=163 Identities=25% Similarity=0.308 Sum_probs=125.2
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCH-HHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCC--CCCHHHHHHHHHHH
Q ss_conf 1124421677753035410145401-21211000000102663298689982264212473116--77512344333335
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPK-IADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQG--AGIGDRFLKHTERT 237 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~k-Ia~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~--~glG~~FLrhIer~ 237 (335)
-|+|||+||||||||+|+|++.+.. |++.|.||++.+.|.+...+.+|.++||||+....... +-+-.+-+..|+.|
T Consensus 3 ~VaIvGrpNvGKStLfN~l~~~~~aIv~~~~G~TRD~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~~i~~q~~~ai~~a 82 (438)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFIVIDTGGIDPGDEDGFEKQMREQALLAIEEA 82 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 89998999987899999986886187159899984715899999992899998979898882079999999999999858
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 78875202222110134666789987776675059889999746589988999999999986299489998887889999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
++++||||+.+.-..+|++ |.+.|++ ..||.++|+||+|....+. ...++.+..-.++++|||.++.|+++
T Consensus 83 DlIlfVvD~~~git~~D~~-i~~~Lrk-----~~k~vilviNK~D~~~~~~---~~~ef~~LGf~~~i~iSA~h~~Gi~~ 153 (438)
T PRK00093 83 DVILFVVDGRAGLTPADEE-IAKILRK-----SNKPVILVVNKVDGKKMEA---DAYEFYSLGLGEPYPISAEHGRGIGD 153 (438)
T ss_pred CEEEEEEECCCCCCHHHHH-HHHHHHH-----CCCCEEEEEECCCCCCHHH---HHHHHHHHCCCCEEEEEECCCCCHHH
T ss_conf 9999998377689878999-9999997-----3997899997556632034---59999983689818885305669899
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999854523
Q gi|254780648|r 318 ILECLHDKIFSIRGE 332 (335)
Q Consensus 318 L~~~I~e~L~~~r~e 332 (335)
|++.|.+.+.+...+
T Consensus 154 L~~~i~~~l~~~~~~ 168 (438)
T PRK00093 154 LLDAILELLPEEEEE 168 (438)
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 999998548855434
No 48
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.95 E-value=1e-28 Score=193.96 Aligned_cols=165 Identities=19% Similarity=0.238 Sum_probs=126.3
Q ss_pred EEEECEEEEECCCCCCCEEEEEECCCCCHH-HHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCC--CCCHHHHHHH
Q ss_conf 763011244216777530354101454012-1211000000102663298689982264212473116--7751234433
Q gi|254780648|r 157 KLIADIGIIGLPNAGKSTFLASVTRAKPKI-ADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQG--AGIGDRFLKH 233 (335)
Q Consensus 157 k~iaDVglVG~PNaGKSTLln~ls~ak~kI-a~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~--~glG~~FLrh 233 (335)
+.+.-|||||+||||||||+|+|++.+-.| .+.|.+|++.+.+.+...+.+|.++||+|+-.. .++ ..+-.+....
T Consensus 277 ~~~p~VAIVGRPNVGKSTLFNRL~g~r~AIV~d~pGvTRDR~~~~~~~~~~~F~lvDTGG~~~~-~~~~~~~I~~Q~~~A 355 (714)
T PRK09518 277 EPVGTVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGRDFKLVDTGGWEAD-AEGIEAAIASQAEIA 355 (714)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEECCCCCCC-CHHHHHHHHHHHHHH
T ss_conf 8888799989998768999988628841684698998837555799999916999979999988-326999999999999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 33357887520222211013466678998777667505988999974658998899999999998629948999888788
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGH 313 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~ 313 (335)
|+.+++++||||+...-...|++ |.+-|++ .+||.++|+||+|-...+. ...++.+..-.++++|||.+|.
T Consensus 356 i~eADlIlFVVD~~~Glt~~D~~-ia~~LRk-----~~KpvilvvNK~D~~~~e~---~~~ef~~LG~~e~~~ISA~Hg~ 426 (714)
T PRK09518 356 MTLADAIVFVVDGQVGMTSTDEV-IARMLQR-----AGKPVVLVANKIDDQASEY---DVAEFWKLGLGEPYSISAMHGR 426 (714)
T ss_pred HHHCCEEEEEEECCCCCCHHHHH-HHHHHHH-----CCCCEEEEEECCCCCCCHH---HHHHHHHCCCCCCEEEECCCCC
T ss_conf 99689999999689798978999-9999985-----6998899998978876401---2999996599996898473578
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999985452
Q gi|254780648|r 314 GIPQILECLHDKIFSIRG 331 (335)
Q Consensus 314 GI~eL~~~I~e~L~~~r~ 331 (335)
|+.+|++.|.+.+.+...
T Consensus 427 G~~dLld~i~~~l~~~~~ 444 (714)
T PRK09518 427 GVADLLDVVLDSLKQHER 444 (714)
T ss_pred CHHHHHHHHHHHCCCCCC
T ss_conf 989999999965888875
No 49
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.95 E-value=1.3e-29 Score=199.32 Aligned_cols=152 Identities=22% Similarity=0.350 Sum_probs=126.9
Q ss_pred ECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCC--CCC-CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 21677753035410145401212110000001026632986899822642124--731-167751234433333578875
Q gi|254780648|r 166 GLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIK--NAH-QGAGIGDRFLKHTERTHVLLH 242 (335)
Q Consensus 166 G~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIe--gA~-~~~glG~~FLrhIer~~vLl~ 242 (335)
|.||||||||+|+||+++.+|+|||++|.+-.-|.+...++++.|+|+||+.. .-| .+.-.-.+||. -|+.|++++
T Consensus 1 GNPNVGKStlFN~LTG~~~~vGNwPG~TVek~eg~l~~~g~~i~ivDLPG~YSL~~~S~~dE~v~~dyl~-~e~~DLv~n 79 (733)
T TIGR00437 1 GNPNVGKSTLFNALTGANQKVGNWPGVTVEKKEGKLKFQGEDIEIVDLPGIYSLTTFSGLDEKVARDYLL-NEKPDLVVN 79 (733)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCEEEE
T ss_conf 9998158999987415870787358870787788975246278998448730058998742799989975-389967999
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 20222211013466678998777667505988999974658998899999999998629948999888788999999999
Q gi|254780648|r 243 IVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILECL 322 (335)
Q Consensus 243 VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I 322 (335)
|||+++- ..++....+-++ ...|.|+|+|++|..+++-+.-..+.|++.++.|++|+||..|.|+++|++.|
T Consensus 80 VVDA~nL--ERnL~LTLQL~E------~G~p~i~~LN~~DeA~k~GI~Id~~~Lee~LGvPVv~~~A~~g~G~~~L~~~i 151 (733)
T TIGR00437 80 VVDASNL--ERNLYLTLQLLE------LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIEELKDAI 151 (733)
T ss_pred EECHHHH--HHHHHHHHHHHH------HCCHHHHHHHHHHHHHHCCCEECHHHHHHHCCCCEEEEEEEECCCHHHHHHHH
T ss_conf 7256677--789999999997------16258568726789977296312577754338652565321057789999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780648|r 323 HDKI 326 (335)
Q Consensus 323 ~e~L 326 (335)
.+..
T Consensus 152 ~~v~ 155 (733)
T TIGR00437 152 REVA 155 (733)
T ss_pred HHHH
T ss_conf 9986
No 50
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.6e-28 Score=192.78 Aligned_cols=158 Identities=20% Similarity=0.306 Sum_probs=130.1
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCC--CCCCCCCCHHHHHHHHHHHH
Q ss_conf 1124421677753035410145401212110000001026632986899822642124--73116775123443333357
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIK--NAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIe--gA~~~~glG~~FLrhIer~~ 238 (335)
.|||+|.||+|||||+|+||+++.+|+|||.+|.+-..|.++..+.++.++|+||+.. ..|++.-.-.+||. =++.|
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll-~~~~D 83 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL-EGKPD 83 (653)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHH-CCCCC
T ss_conf 38985699854899999985667465478980699878899735854899868975658889920899999986-38998
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 88752022221101346667899877766750598899997465899889999999999862994899988878899999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
++++|+|+++- ..++....+ |.+ ..+|+++++|++|.....-..-..+++++..+.|++++||.+|+|+++|
T Consensus 84 ~ivnVvDA~nL--eRnLyltlQ-LlE-----~g~p~ilaLNm~D~A~~~Gi~Id~~~L~~~LGvPVv~tvA~~g~G~~~l 155 (653)
T COG0370 84 LIVNVVDATNL--ERNLYLTLQ-LLE-----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEEL 155 (653)
T ss_pred EEEEEECCCHH--HHHHHHHHH-HHH-----CCCCEEEEECCHHHHHHCCCCCCHHHHHHHHCCCEEEEEECCCCCHHHH
T ss_conf 89996023237--777899999-998-----5998599961275688649712699999986898899873058897999
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q gi|254780648|r 319 LECLHDKIF 327 (335)
Q Consensus 319 ~~~I~e~L~ 327 (335)
++.+.+...
T Consensus 156 ~~~i~~~~~ 164 (653)
T COG0370 156 KRAIIELAE 164 (653)
T ss_pred HHHHHHHCC
T ss_conf 999987432
No 51
>KOG1486 consensus
Probab=99.95 E-value=3.3e-28 Score=190.81 Aligned_cols=163 Identities=28% Similarity=0.430 Sum_probs=130.9
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 01124421677753035410145401212110000001026632986899822642124731167751234433333578
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
|-|+|||||.+||||||+++|..+.+.|+|+|||+.-..|++++++..+.+.|+||||||||+|+|.|.+...-...+++
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDl 142 (364)
T KOG1486 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADL 142 (364)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCHHHHHCCEEEEEEEECCEEEECCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCE
T ss_conf 37999648874478788876411022211024678730316876683479962753000211378877268887403658
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC------------------------------------------------
Q ss_conf 87520222211013466678998777667505------------------------------------------------
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAYNSELRK------------------------------------------------ 271 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~------------------------------------------------ 271 (335)
++.|+|++.. ..+-+.+..||+.-...|.+
T Consensus 143 ilMvLDatk~--e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~plT~~~ek~i~~ILheykI~Naevl~R 220 (364)
T KOG1486 143 ILMVLDATKS--EDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFR 220 (364)
T ss_pred EEEEECCCCC--HHHHHHHHHHHHHHCEECCCCCCCEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHEECCCEEEEE
T ss_conf 9999517761--56789999999974134147899758887436876774240452354999999998874455138984
Q ss_pred ------------------CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf ------------------98899997465899889999999999862994899988878899999999999998545
Q gi|254780648|r 272 ------------------KIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 272 ------------------Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e~L~~~r 330 (335)
-+++-|.||+|.+.-++... +..+ + ..+-||+-...|++.|++.||+.|.-.|
T Consensus 221 ed~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdr----lar~-P-nsvViSC~m~lnld~lle~iWe~l~L~r 291 (364)
T KOG1486 221 EDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDR----LARQ-P-NSVVISCNMKLNLDRLLERIWEELNLVR 291 (364)
T ss_pred CCCCHHHHHHHHHCCCEEEEEEEEEECCCEECHHHHHH----HHCC-C-CCEEEEECCCCCHHHHHHHHHHHHCEEE
T ss_conf 37866878888745632788889951244203888889----8628-9-8589980344688999999998741089
No 52
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.94 E-value=9.6e-28 Score=188.01 Aligned_cols=152 Identities=24% Similarity=0.236 Sum_probs=119.8
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCH-HHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHH-HHHHHHHH
Q ss_conf 01124421677753035410145401-21211000000102663298689982264212473116775123-44333335
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPK-IADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDR-FLKHTERT 237 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~k-Ia~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~-FLrhIer~ 237 (335)
.-|+|+|.||||||||||+|++.... |.+.|.||++..-..+..++..++++||+||-+-...=.-+|++ -++.++++
T Consensus 217 ~~v~i~G~PN~GKSSL~N~L~~~drAIVS~ipGTTRD~ie~~l~l~G~~v~l~DTAGiR~t~d~IE~~GI~ra~~~~~~A 296 (445)
T PRK05291 217 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETEDEVEKIGIERSRKAIEEA 296 (445)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 86998899987689999998578746731899974040223689999899999899766557458899999999999839
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 78875202222110134666789987776675059889999746589988999999999986299489998887889999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
+++++|+|++.....++...+ ..+..+|.++|+||+|+..+.. ...+++.|||++++|+++
T Consensus 297 Dlil~v~D~s~~~~~~~~~~~--------~~~~~~~~i~V~NK~DL~~~~~-----------~~~~~i~iSak~g~Gi~~ 357 (445)
T PRK05291 297 DLVLLVLDASEPLTEEDKEIL--------EEFKNKPVIVVLNKADLTGEKI-----------DGLPVIRISAKTGEGIDE 357 (445)
T ss_pred CEEEEEEECCCCCCCCHHHHH--------HHCCCCCEEEEEEHHHCCCCCC-----------CCCCEEEEECCCCCCHHH
T ss_conf 999999879988872259999--------8517998799985120466534-----------789759998378869999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999998545
Q gi|254780648|r 318 ILECLHDKIFSIR 330 (335)
Q Consensus 318 L~~~I~e~L~~~r 330 (335)
|++.|.+.+....
T Consensus 358 L~~~i~~~~~~~~ 370 (445)
T PRK05291 358 LEEALKQLVGFQG 370 (445)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999970468
No 53
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.94 E-value=1.1e-27 Score=187.66 Aligned_cols=148 Identities=19% Similarity=0.264 Sum_probs=103.5
Q ss_pred ECEEEEECCCCCCCEEEEEECCCC--CHHHHHHHCCCEECCEEEEECCEEEEEECCCCC-CCCCCCC--CCC---HHHHH
Q ss_conf 011244216777530354101454--012121100000010266329868998226421-2473116--775---12344
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAK--PKIADYPFTTLYPNLGIVKEGYKEFILADIPGI-IKNAHQG--AGI---GDRFL 231 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak--~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGl-IegA~~~--~gl---G~~FL 231 (335)
--||+||+||||||||+|+|++.+ ..++++|.||+.-+.. ..+.+++++||||+ ....++. ..+ =.+||
T Consensus 19 p~IaivGrpNvGKSTL~N~L~g~k~~a~vs~~pGtTr~i~~~---~~~~~~~lvDtpGyG~~~~~~~~~~~~~~~~~~~~ 95 (179)
T TIGR03598 19 PEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFF---EVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYL 95 (179)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEE---EECCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 789998699988899999986898558970899736602320---10473699977760211278888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-----CCCEEE
Q ss_conf 333335788752022221101346667899877766750598899997465899889999999999862-----994899
Q gi|254780648|r 232 KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQC-----GQVPFE 306 (335)
Q Consensus 232 rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~-----~~~vi~ 306 (335)
...+..+.+++|+|+...-..+|.+++ +.|.. ..+|.++|+||+|+++.++..+..+++.+.+ ..++++
T Consensus 96 ~~~~~l~~villiDa~~gl~~~D~~i~-~~l~~-----~~kp~iivlNK~Dll~~~~~~~~~~~i~~~l~~~~~~~~v~~ 169 (179)
T TIGR03598 96 RGRENLKGVVLLMDIRHPLKELDLEML-EWLDE-----RGIPVLIVLTKADKLKKSERNKQLKKIKKALKKDADDPSVQL 169 (179)
T ss_pred HHHHHHHCEEEEEECCCCCCHHHHHHH-HHHHH-----CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 998864302898743779989999999-99997-----599889999781306989999999999999733668894899
Q ss_pred EECCCCCCHH
Q ss_conf 9888788999
Q gi|254780648|r 307 FSSITGHGIP 316 (335)
Q Consensus 307 ISA~tg~GI~ 316 (335)
|||++++|+|
T Consensus 170 ISA~~g~GID 179 (179)
T TIGR03598 170 FSSLKKTGIE 179 (179)
T ss_pred EECCCCCCCC
T ss_conf 9799983879
No 54
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.93 E-value=5.3e-26 Score=177.46 Aligned_cols=158 Identities=27% Similarity=0.304 Sum_probs=124.3
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHH-HHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCC--CCCCHHHHHHHHHHH
Q ss_conf 11244216777530354101454012-121100000010266329868998226421247311--677512344333335
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKI-ADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQ--GAGIGDRFLKHTERT 237 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kI-a~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~--~~glG~~FLrhIer~ 237 (335)
-|||||+||||||||+|+|++.+..| +|+|.||++++.+..+..+..|.++||+||.++..+ ..-+-.+-+..|+++
T Consensus 5 ~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eA 84 (444)
T COG1160 5 VVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEA 84 (444)
T ss_pred EEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 89998999875899998875770267606999755775450698386079997899776881289999999999999767
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 78875202222110134666789987776675059889999746589988999999999986299489998887889999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
++++||||+.+.-..+| +.+-+-|.. .+||.++|+||+|-.+.+ +...++....-.++++|||.+|.|+.+
T Consensus 85 DvilfvVD~~~Git~~D-~~ia~~Lr~-----~~kpviLvvNK~D~~~~e---~~~~efyslG~g~~~~ISA~Hg~Gi~d 155 (444)
T COG1160 85 DVILFVVDGREGITPAD-EEIAKILRR-----SKKPVILVVNKIDNLKAE---ELAYEFYSLGFGEPVPISAEHGRGIGD 155 (444)
T ss_pred CEEEEEEECCCCCCHHH-HHHHHHHHH-----CCCCEEEEEECCCCCHHH---HHHHHHHHCCCCCCEEEEHHHCCCHHH
T ss_conf 99999984887899789-999999985-----399889999766673045---648999864789826842553569899
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q gi|254780648|r 318 ILECLHDKIF 327 (335)
Q Consensus 318 L~~~I~e~L~ 327 (335)
|++.+.+.+.
T Consensus 156 Lld~v~~~l~ 165 (444)
T COG1160 156 LLDAVLELLP 165 (444)
T ss_pred HHHHHHHHCC
T ss_conf 9999997567
No 55
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.93 E-value=1.8e-26 Score=180.35 Aligned_cols=158 Identities=23% Similarity=0.199 Sum_probs=123.2
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCH-HHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHH-HHHHHHHHH
Q ss_conf 1124421677753035410145401-21211000000102663298689982264212473116775123-443333357
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPK-IADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDR-FLKHTERTH 238 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~k-Ia~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~-FLrhIer~~ 238 (335)
-|+|||.||||||||||+|++..-. |.|.|.||++-.-..++.++..+.++||+||.|-...=.-+|.+ -.+.++.++
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~AD 298 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEAD 298 (454)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 49998799886799999886678667428999741037899998988999985677666734899999999999998599
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 88752022221101346667899877766750598899997465899889999999999862994899988878899999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
+++||+|++.+.+.++...+. ..-.++|.++|+||+|+..+...... ....+.+++.+||++++|++.|
T Consensus 299 lvL~v~D~~~~~~~~d~~~~~-------~~~~~~~~i~v~NK~DL~~~~~~~~~----~~~~~~~~i~iSa~t~~Gl~~L 367 (454)
T COG0486 299 LVLFVLDASQPLDKEDLALIE-------LLPKKKPIIVVLNKADLVSKIELESE----KLANGDAIISISAKTGEGLDAL 367 (454)
T ss_pred EEEEEEECCCCCCHHHHHHHH-------HCCCCCCEEEEEECHHCCCCCCCCHH----HCCCCCCEEEEEECCCCCHHHH
T ss_conf 899997088777601177887-------24368977999960211564321012----0267882699982576579999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999854
Q gi|254780648|r 319 LECLHDKIFSI 329 (335)
Q Consensus 319 ~~~I~e~L~~~ 329 (335)
.+.|.+.+...
T Consensus 368 ~~~i~~~~~~~ 378 (454)
T COG0486 368 REAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHC
T ss_conf 99999998630
No 56
>KOG1490 consensus
Probab=99.93 E-value=9.9e-26 Score=175.82 Aligned_cols=167 Identities=22% Similarity=0.317 Sum_probs=132.7
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCC----CHHHHHHHHHH
Q ss_conf 11244216777530354101454012121100000010266329868998226421247311677----51234433333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAG----IGDRFLKHTER 236 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~g----lG~~FLrhIer 236 (335)
..-|+|+||||||||+|.+|+|.+.|.+|||||..-.+|.+.+.+.+|.++|||||..-.-|..+ ..+.-|.|+.
T Consensus 170 TlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLr- 248 (620)
T KOG1490 170 TLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLR- 248 (620)
T ss_pred EEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH-
T ss_conf 1798527887737643552015555577665510121002032402344038841247605432179999999998756-
Q ss_pred HHHHHHHCCCCCCCH---HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH----HHHHHHHHHHCCCCEEEEEC
Q ss_conf 578875202222110---13466678998777667505988999974658998899----99999999862994899988
Q gi|254780648|r 237 THVLLHIVSALEENV---QAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL----ARKKNELATQCGQVPFEFSS 309 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~---~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~----~~~~~~l~~~~~~~vi~ISA 309 (335)
.++||+.|.|+.+. .++++ |-+ +..+-+.+||.|+|+||+|++..+.+ .+++..+.+..+.+++..|+
T Consensus 249 -aaVLYfmDLSe~CGySva~Qvk-Lfh---sIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~ 323 (620)
T KOG1490 249 -SAVLYFMDLSEMCGYSVAAQVK-LYH---SIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC 323 (620)
T ss_pred -HHHEEEEECHHHHCCCHHHHHH-HHH---HHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf -5641134322120888999999-998---76788628846999520025686566878899999988604833887325
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 878899999999999998545230
Q gi|254780648|r 310 ITGHGIPQILECLHDKIFSIRGEN 333 (335)
Q Consensus 310 ~tg~GI~eL~~~I~e~L~~~r~e~ 333 (335)
++.+|+-+++..-++.|...|-|+
T Consensus 324 ~~eegVm~Vrt~ACe~LLa~RVE~ 347 (620)
T KOG1490 324 VQEEGVMDVRTTACEALLAARVEQ 347 (620)
T ss_pred CCHHCEEEHHHHHHHHHHHHHHHH
T ss_conf 540020007778999999999999
No 57
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=99.93 E-value=3.2e-26 Score=178.81 Aligned_cols=139 Identities=19% Similarity=0.231 Sum_probs=98.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298689982264212473116775123443333357887
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
|+|||+||||||||+|+|.+.+-. .+-|-||.. +..++||||+.. +++.+..........+++++
T Consensus 4 VaivGrpNvGKSTLlN~L~g~~i~-~~K~qtt~~-----------~~~~IDTPG~~~---~~~~~~~~~~~~~~daDvil 68 (143)
T pfam10662 4 IMLIGRSGCGKTTLTQALNGEELK-YKKTQAIEF-----------SDNMIDTPGEYL---ENRRFYSALIVTAADADVIA 68 (143)
T ss_pred EEEECCCCCCHHHHHHHHCCCCEE-ECCCEEEEE-----------CCCEEECCCCCC---CCHHHHHHHHHHHHHCCEEE
T ss_conf 999899999999999997599445-178707985-----------574899987665---62899999999996499999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHH
Q ss_conf 520222211013466678998777667505988999974658998899999999998629-9489998887889999999
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCG-QVPFEFSSITGHGIPQILE 320 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~-~~vi~ISA~tg~GI~eL~~ 320 (335)
+|+|++++.- .+... -.+..+||.++|+||+|+++.++..+..+++.+..+ .++|||||++|+|+++|++
T Consensus 69 ~vvDa~~~~~--~~~~~-------~~~~~~kpvIlViNKiD~~~~~~~l~~~~~~~~~~~~~~i~~iSA~~g~Gid~L~~ 139 (143)
T pfam10662 69 LVQDATEPWS--VFPPG-------FASMFNKPVIGIITKIDLAKDEANIEMVEEWLNNAGAEKIFEVSAVTNEGIDELFA 139 (143)
T ss_pred EEEECCCCCC--CCCHH-------HHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
T ss_conf 9987788667--56877-------89754798899998022457566789999999758998799988989989999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780648|r 321 CLHD 324 (335)
Q Consensus 321 ~I~e 324 (335)
+|.+
T Consensus 140 ~l~e 143 (143)
T pfam10662 140 YLEE 143 (143)
T ss_pred HHHC
T ss_conf 9749
No 58
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=3.3e-25 Score=172.61 Aligned_cols=150 Identities=23% Similarity=0.273 Sum_probs=106.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCC---HHHHHHHCCCEECCEEEEE-CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12442167775303541014540---1212110000001026632-9868998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKP---KIADYPFTTLYPNLGIVKE-GYKEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~---kIa~ypFTT~~P~lGvv~~-~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
||++|.||+|||||+|+|++.+. .....+++|.++....+.. ++.++.|+|+||. +. +-...++.+..+
T Consensus 3 VaivG~~n~GKSTL~n~L~g~~~d~~~~e~~~giTi~~~~~~~~~~~~~~i~~iDtPGh-----~~--~~~~~~~~~~~a 75 (164)
T cd04171 3 IGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH-----EK--FIKNMLAGAGGI 75 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCHHHHCCCEEEEEEEEEEECCCCCEEEEEECCCH-----HH--HHHHHHHHHHHC
T ss_conf 99992688729999999849646633333348637985468786489989999948787-----99--999999987426
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEECC
Q ss_conf 788752022221101346667899877766750598-899997465899889999999999862------9948999888
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKI-EIVGLSQIDTVDSDTLARKKNELATQC------GQVPFEFSSI 310 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp-~IIVlNKiDl~~~e~~~~~~~~l~~~~------~~~vi~ISA~ 310 (335)
++.++|||+++. ..++-.....-++. ...| .++|+||+|+++++......+++.+.. +.+++||||+
T Consensus 76 D~~llVvda~~g-~~~q~~e~~~~~~~-----~~i~~~ivvlNK~D~v~~~~~~~~~~~i~~~l~~~~~~~~pii~iSA~ 149 (164)
T cd04171 76 DLVLLVVAADEG-IMPQTREHLEILEL-----LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAV 149 (164)
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHHH-----CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 725899861778-88889999999987-----388727873463425797899999999999997439999829994698
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 78899999999999
Q gi|254780648|r 311 TGHGIPQILECLHD 324 (335)
Q Consensus 311 tg~GI~eL~~~I~e 324 (335)
+|+|+++|++.|.+
T Consensus 150 tG~Gi~eL~~~I~e 163 (164)
T cd04171 150 TGEGIEELKEYLDE 163 (164)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 98299999999984
No 59
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=99.92 E-value=3.3e-25 Score=172.62 Aligned_cols=155 Identities=20% Similarity=0.224 Sum_probs=106.0
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCC-----------------CEECCEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 0112442167775303541014540121211000-----------------00010266329868998226421247311
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTT-----------------LYPNLGIVKEGYKEFILADIPGIIKNAHQ 222 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT-----------------~~P~lGvv~~~~~~~~i~D~PGlIegA~~ 222 (335)
-.||+||.||||||||+|+|......|.....+| +......+..++.++.++||||-.+
T Consensus 4 rnVaivG~~n~GKSTL~n~Ll~~~~~i~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDtPGh~~---- 79 (185)
T pfam00009 4 RNIGIIGHVDHGKTTLTDALLYVTGAIDKRGEVKQEGELDRLKEERERGITIKIAAVSFETKKRHINIIDTPGHVD---- 79 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEEEEEEECCCEEEEEECCCCCC----
T ss_conf 7899993899449999999971548765464310033336558888578269876999960893689998998714----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--
Q ss_conf 677512344333335788752022221101346667899877766750598899997465899889999999999862--
Q gi|254780648|r 223 GAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQC-- 300 (335)
Q Consensus 223 ~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~-- 300 (335)
.-...++-++.+++.++|||+++.--.++.+ +...+.. ..+|.++|+||+|+++.+...+..+++.+.+
T Consensus 80 ---f~~~~~~~l~~aD~~vlVvda~~G~~~qt~~-~~~~~~~-----~~~p~iv~vNKiD~v~~~~~~~~~~e~~~~ll~ 150 (185)
T pfam00009 80 ---FTKEMIRGAAQADGAILVVDAVEGVMPQTRE-HLLLAKQ-----LGVPIIVFINKMDRVDDAELDEVVEEISRELLE 150 (185)
T ss_pred ---HHHHHHHHHHHCCCCEEEEECCCCCCCCCHH-HHHHHHH-----HCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf ---3999999986465642999867685323099-9999998-----289879999773277767699999999999888
Q ss_pred -------CCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf -------994899988878899999999999998
Q gi|254780648|r 301 -------GQVPFEFSSITGHGIPQILECLHDKIF 327 (335)
Q Consensus 301 -------~~~vi~ISA~tg~GI~eL~~~I~e~L~ 327 (335)
..+++||||++|+|+++|++.|.+.+.
T Consensus 151 ~~~~~~~~~pivpiSA~~G~gv~~Ll~~i~~~lP 184 (185)
T pfam00009 151 KYGFGGETIPVIPGSALTGEGIDTLLEALDLYLP 184 (185)
T ss_pred HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7324899886999678999798999999997785
No 60
>KOG1487 consensus
Probab=99.91 E-value=6.2e-26 Score=177.04 Aligned_cols=166 Identities=27% Similarity=0.411 Sum_probs=136.3
Q ss_pred EEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 76301124421677753035410145401212110000001026632986899822642124731167751234433333
Q gi|254780648|r 157 KLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTER 236 (335)
Q Consensus 157 k~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer 236 (335)
-..|-|+|||||.+|||||++.++.....+|+|.|||+...-|++++..-.+.+.|+||+||||.+|+|.|.+.+.-...
T Consensus 57 tg~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487 57 TGDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ECCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCEEECCCCCEEEECCCCHHCCCCCCCCCCCEEEEEEEC
T ss_conf 12415537853766624332230188876554332268970666740456234304854001464678876078888301
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC--------------------------------------------
Q ss_conf 578875202222110134666789987776675059--------------------------------------------
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKK-------------------------------------------- 272 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~K-------------------------------------------- 272 (335)
|.+|+.|+|+.. |+..-++|.+||+.|...|.++
T Consensus 137 cnli~~vld~~k--p~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~ 214 (358)
T KOG1487 137 CNLIFIVLDVLK--PLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRF 214 (358)
T ss_pred CCEEEEEEECCC--CCCHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCHHEEEEC
T ss_conf 658998711067--521788998763103666148899763012444743001320027889999887643102305635
Q ss_pred ------------------CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf ------------------8899997465899889999999999862994899988878899999999999998545
Q gi|254780648|r 273 ------------------IEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 273 ------------------p~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e~L~~~r 330 (335)
|.+.++||+|.+.-+++.-+. ......||||.+++|+|+|++.+++.+.-.|
T Consensus 215 DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdii~------~iphavpISA~~~wn~d~lL~~mweyL~Lvr 284 (358)
T KOG1487 215 DATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDIIY------TIPHAVPISAHTGWNFDKLLEKMWEYLKLVR 284 (358)
T ss_pred CCCHHHHHHHHCCCCEEEEEEEEECCCCEEEEECCCEEE------ECCCEEECCCCCCCCHHHHHHHHHHCCHHEE
T ss_conf 764222432200573156655562223501210132011------0563245245666556788988730600248
No 61
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.90 E-value=2.3e-23 Score=161.49 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=101.8
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE---EEEECCEEEEEECCCCCCCCCCCCCCCHHHHH--H--HH
Q ss_conf 12442167775303541014540121211000000102---66329868998226421247311677512344--3--33
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG---IVKEGYKEFILADIPGIIKNAHQGAGIGDRFL--K--HT 234 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG---vv~~~~~~~~i~D~PGlIegA~~~~glG~~FL--r--hI 234 (335)
||++|.||+|||||+|+|+..+.....++.+|.+.... ....+..+|.++||||- + .|. + -.
T Consensus 3 VaivG~~n~GKSTL~n~L~~~~~~~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh-----~------~f~~~~~~~~ 71 (168)
T cd01887 3 VTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH-----E------AFTNMRARGA 71 (168)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEECCCCEEEECEEEEEEEECCCCEEEEEECCCC-----H------HHHHHHHHHH
T ss_conf 9999489985989999985867504516981687153999988258871899989981-----6------7799999998
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH--HHHHHHHHHHHH----HC--CCCEEE
Q ss_conf 3357887520222211013466678998777667505988999974658998--899999999998----62--994899
Q gi|254780648|r 235 ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS--DTLARKKNELAT----QC--GQVPFE 306 (335)
Q Consensus 235 er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~--e~~~~~~~~l~~----~~--~~~vi~ 306 (335)
.-++++++|||+.+..-.++++ +.+.++. .++|.++|+||+|+++. +.....+.++.. .. ..+++|
T Consensus 72 ~~aD~~ilvvda~~g~~~~~~~-~~~~l~~-----~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~iIp 145 (168)
T cd01887 72 SLTDIAILVVAADDGVMPQTIE-AIKLAKA-----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVP 145 (168)
T ss_pred HHCCEEEEEEECCCCCCHHHHH-HHHHHHH-----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEE
T ss_conf 6268899998646675458999-9999987-----699789999893089879899999999975452455289875999
Q ss_pred EECCCCCCHHHHHHHHHHHHH
Q ss_conf 988878899999999999998
Q gi|254780648|r 307 FSSITGHGIPQILECLHDKIF 327 (335)
Q Consensus 307 ISA~tg~GI~eL~~~I~e~L~ 327 (335)
|||++|+|+++|++.|...-+
T Consensus 146 vSA~tG~gi~~L~~~i~~~a~ 166 (168)
T cd01887 146 TSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred EECCCCCCHHHHHHHHHHHHH
T ss_conf 989999899999999999971
No 62
>TIGR00450 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 The GTP-binding domain of all TrmE/ThdF orthologues is found in the C-terminal portion of the molecule. The N-terminal half can be removed without affecting the GTP-binding/hydrolysis function of the GTP-binding domain. The last four amino acids of all orthologues of ThdF/TrmE are highly conserved, being either CIGK or CLGK. This matches the Caax (where 'a' represents an aliphatic amino acid, and 'x' represents any amino acid) motif for isoprenylation that anchors small GTP-binding proteins to cell membranes in eukaryotic cells. However, protein isoprenylation has never been shown to occur in bacteria. Interestingly, biochemical experiments have shown that the Escherichia coli TrmE protein peripherally associates with the membrane fraction . Although the biochemical properties of TrmE have been investigated for the E. coli and Thermotoga maritima proteins, nothing is known about the relationship of this protein to tRNA modification. Orthologues of TrmE are present in eukaryotes and bacteria, but are not present in archaea. In Saccharomyces cerevisiae, Mss1p is a nuclear-encoded mitochondrial protein that is the yeast orthologue of TrmE. Mss1p interacts with the 15S rRNA of the yeast mitochondria, which is equivalent to the 16S rRNA of bacteria. Subsequent analysis of the S. cerevisiae MTO1 gene suggests that MSS1 and MTO1 act together in a pathway involved in optimizing mitochondrial protein synthesis. TrmE may play a role in tRNA processing and may be directly or indirectly involved in regulating ribosome function.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006400 tRNA modification, 0005622 intracellular.
Probab=99.88 E-value=8.7e-24 Score=164.04 Aligned_cols=162 Identities=21% Similarity=0.239 Sum_probs=115.5
Q ss_pred ECEEEEECCCCCCCEEEEEECCC-CCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHH-HHHHHHHH
Q ss_conf 01124421677753035410145-40121211000000102663298689982264212473116775123-44333335
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRA-KPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDR-FLKHTERT 237 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~a-k~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~-FLrhIer~ 237 (335)
--|+|||.||||||||||++++. |.=|.+||+|||+-.=+.+..++..+.+.||+||.+-++.=.-+|++ -.+-|+.|
T Consensus 226 ~k~ai~G~~NvGKSSLLNa~l~~DrAiVS~~kGtTRD~vE~~~~L~G~~~~~lDTAGiR~~~~~~E~~GiekS~~~i~~A 305 (473)
T TIGR00450 226 FKLAIVGKPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILVKLLDTAGIREHADKVERLGIEKSFKAIKQA 305 (473)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 47999647887578999987622870552766883204420577746789985146751020046677689989998605
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH-HHHHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 78875202222110134666789987776675059889999746589988-99999999998629948999888788999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD-TLARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e-~~~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
++++||+|++.+...+++..|..+ . -.+||.++|+||.||.... ... ...+......++..++|. ..++.
T Consensus 306 ~LVi~~~D~~~~~~~ddf~li~~~-~-----k~~k~~~~V~NK~DL~~nkr~~~--~~~~~~~~~~~~~~~~~~-~~~~~ 376 (473)
T TIGR00450 306 DLVIYVLDASQPLTKDDFELIITL-N-----KKKKPLILVLNKIDLAINKRKLE--LEFLVSELKLTVLLLSAK-QLKIK 376 (473)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH-H-----HCCCCEEEEECCCCCCCHHHHHH--HHHHCCHHHHHHHHHHHH-HCCCH
T ss_conf 734788874789881058999997-3-----21797799973501650023444--444131134578899887-30656
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999998545
Q gi|254780648|r 317 QILECLHDKIFSIR 330 (335)
Q Consensus 317 eL~~~I~e~L~~~r 330 (335)
++.+.|.+++.+..
T Consensus 377 ~~~d~L~~~i~~~~ 390 (473)
T TIGR00450 377 ALVDLLTQKINAFY 390 (473)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 67999999999874
No 63
>KOG1423 consensus
Probab=99.88 E-value=2.7e-22 Score=154.98 Aligned_cols=189 Identities=21% Similarity=0.305 Sum_probs=126.1
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCH-HHHHHHCCCEECCEEEEE
Q ss_conf 44332676676-7610136775302689999976301124421677753035410145401-212110000001026632
Q gi|254780648|r 126 GNAHFKSSTNQ-APYYANPGILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPK-IADYPFTTLYPNLGIVKE 203 (335)
Q Consensus 126 GN~~f~s~~n~-~P~~~~~G~~G~~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~k-Ia~ypFTT~~P~lGvv~~ 203 (335)
|.++-.++.-+ .|--++.-.++|.... --||+||.||||||||.|.+-+.+.- +.+-+-||++.++|++..
T Consensus 45 G~s~~etsv~p~~pa~~esrde~e~~k~-------L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts 117 (379)
T KOG1423 45 GYSDWETSVGPLYPAALESRDEEEAQKS-------LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS 117 (379)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHCCEE-------EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 6467666556676620037884111157-------899997089765455445764872120115665302013578715
Q ss_pred CCEEEEEECCCCCCCCCCCCC-CCHHHHH----HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 986899822642124731167-7512344----33333578875202222110134666789987776675059889999
Q gi|254780648|r 204 GYKEFILADIPGIIKNAHQGA-GIGDRFL----KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGL 278 (335)
Q Consensus 204 ~~~~~~i~D~PGlIegA~~~~-glG~~FL----rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVl 278 (335)
+..|++|.|+||+|...+.-. -+-..|| +.++++++++.|+|+++.-..-. -.+.+-|+.| .+-|.++|+
T Consensus 118 ~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y----s~ips~lvm 192 (379)
T KOG1423 118 GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY----SKIPSILVM 192 (379)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHCHHHHHHHCCEEEEEEECCCCCCCCC-HHHHHHHHHH----HCCCCEEEC
T ss_conf 96589996487645334135678888765378988863887999985567767568-0787778998----618720330
Q ss_pred ECCCCCCHHHHH-------------HHHHHHHHHC---C----------C----CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 746589988999-------------9999999862---9----------9----489998887889999999999999
Q gi|254780648|r 279 SQIDTVDSDTLA-------------RKKNELATQC---G----------Q----VPFEFSSITGHGIPQILECLHDKI 326 (335)
Q Consensus 279 NKiDl~~~e~~~-------------~~~~~l~~~~---~----------~----~vi~ISA~tg~GI~eL~~~I~e~L 326 (335)
||+|.+...... ....++++.+ + | .+|++||++|+||++|.++|..+.
T Consensus 193 nkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423 193 NKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred CCHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 400022146677666776055510034565888735597433564324764531489984046667899999997237
No 64
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=1.3e-21 Score=150.79 Aligned_cols=150 Identities=20% Similarity=0.217 Sum_probs=108.0
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHH----------HH------HHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCC
Q ss_conf 112442167775303541014540121----------21------10000001026632986899822642124731167
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIA----------DY------PFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGA 224 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa----------~y------pFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~ 224 (335)
.|+++|.||+|||||+++|......+. |+ ...|+......+...+.+|.++|+||- +
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPGh-----~-- 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGH-----E-- 73 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCCC-----H--
T ss_conf 989991799899999999997647235686258885057778886384132227999989989999969981-----8--
Q ss_pred CCHHHHH----HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 7512344----333335788752022221101346667899877766750598899997465899889999999999862
Q gi|254780648|r 225 GIGDRFL----KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQC 300 (335)
Q Consensus 225 glG~~FL----rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~ 300 (335)
+|+ +-+..++..+.|||+.+.--.++ +.+.+.++. ..+|.++++||+|+++++...+..+++.+.+
T Consensus 74 ----~f~~~~~~~l~~aD~ailvVda~~G~~~qt-~~~~~~~~~-----~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l 143 (189)
T cd00881 74 ----DFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE-----GGLPIIVAINKIDRVGEEDLEEVLREIKELL 143 (189)
T ss_pred ----HHHHHHHHHHHHCCEEEEEEECCCCCCHHH-HHHHHHHHH-----CCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf ----899999999864685699998798998789-999999997-----6998799998971877562999999999998
Q ss_pred -----------------CCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf -----------------994899988878899999999999998
Q gi|254780648|r 301 -----------------GQVPFEFSSITGHGIPQILECLHDKIF 327 (335)
Q Consensus 301 -----------------~~~vi~ISA~tg~GI~eL~~~I~e~L~ 327 (335)
..+++|+||++|+|+++|++.|.+.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~piv~iSA~~G~gv~~Lld~i~~~lP 187 (189)
T cd00881 144 GLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred HHHCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 75321023211012588775999888678697999999997687
No 65
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=99.86 E-value=9.9e-22 Score=151.57 Aligned_cols=154 Identities=21% Similarity=0.183 Sum_probs=105.0
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298689982264212473116775123443333357887
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
|-++|.||||||||++++...+. .. ...|..++...+...+..+.++|+||--+ -+.+.. .+.+.|++++
T Consensus 17 i~llG~~~vGKTsll~~~~~~~~--~~-~~pTig~~~~~v~~~~~~~~iwDt~Gqe~----~~~~~~---~y~~~a~~ii 86 (174)
T pfam00025 17 ILILGLDNAGKTTILYKLKLGEI--VT-TIPTIGFNVETVTYKNVKFTVWDVGGQES----LRPLWR---NYFPNTDAVI 86 (174)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC--CC-CCCCCCCEEEEEEECCEEEEEEECCCCCC----CCHHHH---HHHCCCCEEE
T ss_conf 99999999988999999954998--87-44746823899998999999982798702----326799---8841782689
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCHHH
Q ss_conf 52022221101346667899877766750598899997465899889999999999----86299489998887889999
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELA----TQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~----~~~~~~vi~ISA~tg~GI~e 317 (335)
||+|+++....+.......++.. ...+.+.|.++|.||+|+.+.....+....+. ...++.+|++||++|+||+|
T Consensus 87 ~V~D~t~~~s~~~~~~~l~~~l~-~~~~~~~piliv~NK~DL~~~~~~~ei~~~~~~~~~~~~~~~~~~~SAktG~gI~e 165 (174)
T pfam00025 87 FVVDSADRDRIEEAKEELHALLN-EEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKSRPWEIQGCSAVTGEGLDE 165 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHH-HHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHH
T ss_conf 99867867879999999999875-42358970899872566767899999999997864417996899998867959899
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780648|r 318 ILECLHDKI 326 (335)
Q Consensus 318 L~~~I~e~L 326 (335)
+.++|.+.+
T Consensus 166 ~f~~L~~~I 174 (174)
T pfam00025 166 GLDWLSNYI 174 (174)
T ss_pred HHHHHHHHC
T ss_conf 999999539
No 66
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.86 E-value=7.5e-22 Score=152.29 Aligned_cols=156 Identities=19% Similarity=0.297 Sum_probs=108.0
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102----66329868998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|-++|.+||||||||++++....+....++++..|.+| .+..++..+.++|+||- | .-+-+. -.+.+.|
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~~~~~~~~~~~~~Tvg~~~~~i~~~~~~l~iwD~~Gq-e---~~~~l~---~~y~~~a 74 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQ-E---SLRSLW---DKYYAEC 74 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCC-H---HHHHHH---HHHCCCC
T ss_conf 99999999888899998875036767776554035313268999989999999968987-8---887899---8742898
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH---HHHHHHHHHHH---HHCCCCEEEEECCC
Q ss_conf 7887520222211013466678998777667505988999974658998---89999999999---86299489998887
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS---DTLARKKNELA---TQCGQVPFEFSSIT 311 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~---e~~~~~~~~l~---~~~~~~vi~ISA~t 311 (335)
+.++||+|+++.+..++......++.. +..+.+.|.+|++||+|+.+. +++.+...... ...++.++++||++
T Consensus 75 ~~ii~VvD~sd~~~~~~~~~~l~~~~~-~~~~~~~pili~~NK~Dl~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~SAkt 153 (167)
T cd04160 75 HAIIYVIDSTDRERFEESKSALEKVLR-NEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHH-CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 789999866867889999999999751-1024896299997066766577899999999999998546998999988782
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 88999999999999
Q gi|254780648|r 312 GHGIPQILECLHDK 325 (335)
Q Consensus 312 g~GI~eL~~~I~e~ 325 (335)
|+||++.+++|.++
T Consensus 154 G~Gv~e~f~wL~~k 167 (167)
T cd04160 154 GTGVREGIEWLVER 167 (167)
T ss_pred CCCHHHHHHHHHCC
T ss_conf 94989999999659
No 67
>KOG1191 consensus
Probab=99.85 E-value=8.7e-23 Score=157.97 Aligned_cols=175 Identities=23% Similarity=0.263 Sum_probs=122.7
Q ss_pred EEEECEEEEECCCCCCCEEEEEECCCCCH-HHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCC-CCCHHHH-HHH
Q ss_conf 76301124421677753035410145401-21211000000102663298689982264212473116-7751234-433
Q gi|254780648|r 157 KLIADIGIIGLPNAGKSTFLASVTRAKPK-IADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQG-AGIGDRF-LKH 233 (335)
Q Consensus 157 k~iaDVglVG~PNaGKSTLln~ls~ak~k-Ia~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~-~glG~~F-Lrh 233 (335)
+.=.+|+|+|+||||||||||+|++.... |.+-|.||++-.--.+..++..+.+.||+|+.|-..+. .-+|++- -+.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 35772899769987788999887507744767899964100122763087589997341310026870677768999988
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHH---HHHHH---HHHHHHHHCCCCEEEEEECCCCCCH-HHHHHHHHHHHHHCC---CC
Q ss_conf 33357887520222211013466---67899---8777667505988999974658998-899999999998629---94
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQ---CILDE---LSAYNSELRKKIEIVGLSQIDTVDS-DTLARKKNELATQCG---QV 303 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~---~I~~E---L~~y~~~L~~Kp~IIVlNKiDl~~~-e~~~~~~~~l~~~~~---~~ 303 (335)
++|++++++|||+.+.+..++.. .|..| +..+.+...++|.++++||+|+..+ .++......+....+ .+
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~ 425 (531)
T KOG1191 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP 425 (531)
T ss_pred HHHCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEECHHHCCCCCCCCCCCCEECCCCCCCCCCC
T ss_conf 76547799996330033325328999988742555897044434623788610221576644567740023533576663
Q ss_pred E-EEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8-999888788999999999999985452
Q gi|254780648|r 304 P-FEFSSITGHGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 304 v-i~ISA~tg~GI~eL~~~I~e~L~~~r~ 331 (335)
+ ..+||++++|++.|...+.+.+.....
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191 426 IVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_conf 37886412004489999999999987516
No 68
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.84 E-value=4.6e-21 Score=147.53 Aligned_cols=154 Identities=19% Similarity=0.125 Sum_probs=104.9
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 01124421677753035410145401212110000001026632986899822642124731167751234433333578
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
+-|.++|.+|||||||++++++.+. +. ..+|...++..+..++.++.+.|+||-- .-+.+- -.+.+.+++
T Consensus 15 ~Ki~ilG~~~sGKTsll~~l~~~~~--~~-~~pT~g~~~~~v~~~~~~~~lwD~~G~~----~~~~~~---~~y~~~a~~ 84 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDI--SH-ITPTQGFNIKTVQSDGFKLNVWDIGGQR----AIRPYW---RNYFENTDC 84 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CC-CCCCCCEEEEEEEECCEEEEEEECCCCH----HHHHHH---HHHCCCCCE
T ss_conf 5899997999988999999856998--66-0681132379999899999998558751----012689---976555637
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH--H--HCCCCEEEEECCCCCCH
Q ss_conf 8752022221101346667899877766750598899997465899889999999999--8--62994899988878899
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELA--T--QCGQVPFEFSSITGHGI 315 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~--~--~~~~~vi~ISA~tg~GI 315 (335)
++||+|+++.+..+.......++-. ...+...|.++++||+|++++....++.+.+. + ..++.++++||++|+||
T Consensus 85 iI~VvD~td~~~~~~~~~~l~~~l~-~~~~~~~PiLiv~NK~Dl~~a~~~~eI~~~l~l~~~~~~~~~i~~~SA~tG~Gi 163 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLE-EEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGL 163 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH-HHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHCCCCCCEEEEEECCCCCCH
T ss_conf 9999966756889999999999974-130069838999976667778999999998587643488758999578579398
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780648|r 316 PQILECLHD 324 (335)
Q Consensus 316 ~eL~~~I~e 324 (335)
+|.+++|.+
T Consensus 164 ~E~f~WL~~ 172 (173)
T cd04155 164 QEGMNWVCK 172 (173)
T ss_pred HHHHHHHHC
T ss_conf 999999854
No 69
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.84 E-value=4.7e-21 Score=147.48 Aligned_cols=153 Identities=20% Similarity=0.176 Sum_probs=104.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298689982264212473116775123443333357887
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
|-++|.||||||||++++..... .. ..+|+..+...+...+.++.++|+||-- .-+.+.. .+.+.+++++
T Consensus 2 i~ilG~~~vGKTsll~~l~~~~~--~~-~~pTig~~~~~i~~~~~~l~iwDt~G~~----~~~~~~~---~y~~~a~~~i 71 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEV--VT-TIPTIGFNVETVEYKNVSFTVWDVGGQD----KIRPLWK---HYYENTNGII 71 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC--CC-CCCEECCCEEEEEECCEEEEEEECCCCC----CCCHHHH---HHHCCCCEEE
T ss_conf 99999999988999999953998--87-4456074089998488999999889972----2144899---8727687768
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCHHH
Q ss_conf 52022221101346667899877766750598899997465899889999999999----86299489998887889999
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELA----TQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~----~~~~~~vi~ISA~tg~GI~e 317 (335)
||+|+++.+..+.......++.. ...+.+.|.+|+.||+|+.+.....+..+.+. ...++.+|++||++|+||+|
T Consensus 72 ~V~D~t~~~s~~~~~~~~~~~~~-~~~~~~~piliv~NK~Dl~~~~~~~ei~~~l~~~~~~~~~~~~~~~SAktg~gI~e 150 (158)
T cd00878 72 FVVDSSDRERIEEAKEELHKLLN-EEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDE 150 (158)
T ss_pred EEEECCCHHHHHHHHHHHHHHHH-HCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
T ss_conf 99837988899999999999986-60557653898760547665789999999985875107998999998887929899
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780648|r 318 ILECLHDK 325 (335)
Q Consensus 318 L~~~I~e~ 325 (335)
+.++|.++
T Consensus 151 ~f~~L~eq 158 (158)
T cd00878 151 GLDWLLQQ 158 (158)
T ss_pred HHHHHHCC
T ss_conf 99999569
No 70
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.84 E-value=1e-20 Score=145.36 Aligned_cols=149 Identities=22% Similarity=0.212 Sum_probs=101.8
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 112442167775303541014540121211000000102----6632986899822642124731167751234433333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTER 236 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer 236 (335)
-|-++|.||||||||++++.+.. |++..|++| .+..++..+.++|+||-- .-+.+... +.+.
T Consensus 16 KililG~~~sGKTsll~~l~~~~-------~~~~~pT~G~~~~~~~~~~~~l~iwD~~G~e----~~~~~~~~---y~~~ 81 (173)
T cd04154 16 RILILGLDNAGKTTILKKLLGED-------IDTISPTLGFQIKTLEYEGYKLNIWDVGGQK----TLRPYWRN---YFES 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHCCCC-------CCCCCCCCCEEEEEEEECCEEEEEEECCCCC----CCCHHHHH---HHCC
T ss_conf 89999899978899999983999-------8972670577789999899999999668860----20058999---7226
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCC
Q ss_conf 5788752022221101346667899877766750598899997465899889999999999----862994899988878
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELA----TQCGQVPFEFSSITG 312 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~----~~~~~~vi~ISA~tg 312 (335)
|++++||+|+++....++......++-. .+.+...|.+|++||+|+.++....++.+.+. ...++.++++||++|
T Consensus 82 a~~ii~VvD~td~~~~~~~~~~l~~ll~-~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG 160 (173)
T cd04154 82 TDALIWVVDSSDRLRLDDCKRELKELLQ-EERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTG 160 (173)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH-HHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 6538999855657889999999999986-354159847999876567778899999999868744579829999889669
Q ss_pred CCHHHHHHHHHH
Q ss_conf 899999999999
Q gi|254780648|r 313 HGIPQILECLHD 324 (335)
Q Consensus 313 ~GI~eL~~~I~e 324 (335)
+||++++++|.+
T Consensus 161 ~gI~e~f~wL~~ 172 (173)
T cd04154 161 EGLLQGIDWLVD 172 (173)
T ss_pred CCHHHHHHHHHC
T ss_conf 298999999864
No 71
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.83 E-value=2.4e-20 Score=143.18 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=105.1
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 11244216777530354101454012121100000010266329868998226421247311677512344333335788
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVL 240 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vL 240 (335)
.|.++|.+|||||||++++...+- ..+| ..|.-.+.-.+...+..+.++|+||-- +-+.+. -.+++.|+++
T Consensus 1 ~I~llG~~~~GKTsll~~~~~~~f-~~~~-~pTig~~~~~i~~~~~~l~iwDt~G~e----~~~~l~---~~y~~~~~~i 71 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQF-SEDT-IPTVGFNMRKVTKGNVTLKVWDLGGQP----RFRSMW---ERYCRGVNAI 71 (159)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCC-CCCC-CCCCCEEEEEEEECCEEEEEEECCCHH----HHHHHH---HHHHCCCCEE
T ss_conf 989999999869999999975999-8861-673250589999899999999798358----779999---9874686368
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH----HHHHCCCCEEEEECCCCCCHH
Q ss_conf 7520222211013466678998777667505988999974658998899999999----998629948999888788999
Q gi|254780648|r 241 LHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNE----LATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 241 l~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~----l~~~~~~~vi~ISA~tg~GI~ 316 (335)
+||+|+++.+..+.......++.. .+.+...|.++|.||+|+.+.....+..+. ..+...+.+|++||++|+||+
T Consensus 72 i~V~D~sd~~s~~~~~~~l~~~~~-~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gI~ 150 (159)
T cd04159 72 VYVVDAADRTALEAAKNELHDLLE-KPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNID 150 (159)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHH-HHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
T ss_conf 751577878899999999999985-4434898289888356764347899999999999873499879999796896989
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780648|r 317 QILECLHD 324 (335)
Q Consensus 317 eL~~~I~e 324 (335)
++.++|.+
T Consensus 151 e~f~wL~~ 158 (159)
T cd04159 151 IVLDWLIK 158 (159)
T ss_pred HHHHHHHC
T ss_conf 99999965
No 72
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=2.2e-20 Score=143.36 Aligned_cols=161 Identities=20% Similarity=0.248 Sum_probs=110.6
Q ss_pred EEECEEEEECCCCCCCEEEEEECCCC--CHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCC-----C---CCH
Q ss_conf 63011244216777530354101454--0121211000000102663298689982264212473116-----7---751
Q gi|254780648|r 158 LIADIGIIGLPNAGKSTFLASVTRAK--PKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQG-----A---GIG 227 (335)
Q Consensus 158 ~iaDVglVG~PNaGKSTLln~ls~ak--~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~-----~---glG 227 (335)
....|+++|+.|||||||||+||+.+ .+++..|..|..+|.=.+. .++.++|+||. |-.+. . .+-
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~---~~~~lVDlPGY--GyAkv~k~~~e~w~~~i 97 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD---DELRLVDLPGY--GYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEC---CCEEEEECCCC--CCCCCCHHHHHHHHHHH
T ss_conf 89679998168666899999996786355657999854236799835---85799817995--40328999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH----CCCC
Q ss_conf 234433333578875202222110134666789987776675059889999746589988999999999986----2994
Q gi|254780648|r 228 DRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQ----CGQV 303 (335)
Q Consensus 228 ~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~----~~~~ 303 (335)
.+||+.=+.-+.+++|||+....-..|.+++ .|-.. .+.|.+||+||+|.+...+..+......+. ..+.
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~em~-----~~l~~-~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~ 171 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLDREMI-----EFLLE-LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDD 171 (200)
T ss_pred HHHHHHCHHHEEEEEEEECCCCCCHHHHHHH-----HHHHH-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999635222489999978999868799999-----99997-59986999971103774678889999999846898866
Q ss_pred --EEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf --89998887889999999999999854
Q gi|254780648|r 304 --PFEFSSITGHGIPQILECLHDKIFSI 329 (335)
Q Consensus 304 --vi~ISA~tg~GI~eL~~~I~e~L~~~ 329 (335)
++..|+.+++|+++|...|.+.+...
T Consensus 172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 172 QWVVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 4399986545448999999999986403
No 73
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.82 E-value=1.9e-20 Score=143.84 Aligned_cols=151 Identities=17% Similarity=0.270 Sum_probs=102.5
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 112442167775303541014540121211000000102----6632986899822642124731167751234433333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTER 236 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer 236 (335)
||-++|.+|||||||++++.....+. ++..|++| .+...+..+.++|++|- ..-+.+-. .+...
T Consensus 1 ~Il~lGl~~sGKTtil~~l~~~~~~~-----~~~~pT~G~~~~~~~~~~~~~~iwD~~G~----~~~r~lw~---~y~~~ 68 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS-----QIIVPTVGFNVESFEKGNLSFTAFDMSGQ----GKYRGLWE---HYYKN 68 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCC-----CCCCCCCCEEEEEEEECCEEEEEEECCCC----CCCCHHHH---HHHCC
T ss_conf 99999999998899999997289875-----64168507578999839988999985887----44205589---87056
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHHHH----HHCCCCEEEEECC
Q ss_conf 5788752022221101346667899877766750--598899997465899889999999999----8629948999888
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAYNSELR--KKIEIVGLSQIDTVDSDTLARKKNELA----TQCGQVPFEFSSI 310 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~--~Kp~IIVlNKiDl~~~e~~~~~~~~l~----~~~~~~vi~ISA~ 310 (335)
|+.++||+|+++.+..+..+....+|-. .+.+. +.|.+|++||+|+.+.....++.+.+. +..++.+|++||+
T Consensus 69 ~~~iI~VvDssd~~~~~~~~~~l~~ll~-~~~~~~~~~PiLI~~NK~D~~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~ 147 (162)
T cd04157 69 IQGIIFVIDSSDRLRLVVVKDELELLLN-HPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNAL 147 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH-CHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECC
T ss_conf 7448999707638889999999999971-765517984599998147788999999999885866524896499997897
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 78899999999999
Q gi|254780648|r 311 TGHGIPQILECLHD 324 (335)
Q Consensus 311 tg~GI~eL~~~I~e 324 (335)
+|+|++|.++||.+
T Consensus 148 tG~Gi~e~f~WL~~ 161 (162)
T cd04157 148 TGEGLDEGVQWLQA 161 (162)
T ss_pred CCCCHHHHHHHHHC
T ss_conf 89798999999865
No 74
>KOG0410 consensus
Probab=99.81 E-value=2.1e-21 Score=149.57 Aligned_cols=166 Identities=24% Similarity=0.303 Sum_probs=123.9
Q ss_pred EEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEE-CCEEEEEECCCCCCCCCCCCCCCHHHH-
Q ss_conf 999976301124421677753035410145401212110000001026632-986899822642124731167751234-
Q gi|254780648|r 153 WLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKE-GYKEFILADIPGIIKNAHQGAGIGDRF- 230 (335)
Q Consensus 153 ~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~-~~~~~~i~D~PGlIegA~~~~glG~~F- 230 (335)
-.+=...+-|++|||.|||||||+++||.|...-.|.-|.|++|+.-..+. .+..+.+.||-|+|..- -.+|=-.|
T Consensus 172 gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdL--P~~LvaAF~ 249 (410)
T KOG0410 172 GREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDL--PIQLVAAFQ 249 (410)
T ss_pred CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHEECCCHHHHCCCCCCCEEEEEECHHHHHHC--CHHHHHHHH
T ss_conf 133577862899963476688999998750058300011012531343007998679996034666547--499999999
Q ss_pred --HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH--HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf --4333335788752022221101346667899877766--750598899997465899889999999999862994899
Q gi|254780648|r 231 --LKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNS--ELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFE 306 (335)
Q Consensus 231 --LrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~--~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ 306 (335)
|.|+..+++|+||+|+|.++..++-+.+...|...+- .-..-.++-|.||+|..+... +......++
T Consensus 250 ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~---------e~E~n~~v~ 320 (410)
T KOG0410 250 ATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV---------EEEKNLDVG 320 (410)
T ss_pred HHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCC---------CCCCCCCCC
T ss_conf 99998752344899861579668888989999997469984777767874212356655667---------535578514
Q ss_pred EECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98887889999999999999854
Q gi|254780648|r 307 FSSITGHGIPQILECLHDKIFSI 329 (335)
Q Consensus 307 ISA~tg~GI~eL~~~I~e~L~~~ 329 (335)
|||++|+|+++|++.+.+.+.+.
T Consensus 321 isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410 321 ISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 30156754799999888876543
No 75
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.80 E-value=1.7e-19 Score=138.02 Aligned_cols=157 Identities=19% Similarity=0.195 Sum_probs=108.1
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 11244216777530354101454012121100000010266329868998226421247311677512344333335788
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVL 240 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vL 240 (335)
-|-++|.+|||||||++++...... ... .|.-.++-.+...+..+.+.|++|= ..-+.+-..| .+.|+.+
T Consensus 19 kililGl~~sGKTsil~~l~~~~~~-~~~--pTvg~~~~~~~~~~~~l~iwD~~Gq----e~~r~lw~~y---y~~~~gi 88 (182)
T PTZ00133 19 RILMVGLDAAGKTTILYKLKLGEVV-TTI--PTIGFNVETVEYKNLKFTMWDVGGQ----DKLRPLWRHY---YQNTNGI 88 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-CCC--CCCCCCEEEEEECCEEEEEEECCCC----CCCCHHHHHC---CCCCCEE
T ss_conf 9999967998899999999629977-737--8688456999978889999989998----4547478760---5676449
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHH----HHHCCCCEEEEECCCCCC
Q ss_conf 7520222211013466678998777--6675059889999746589988999999999----986299489998887889
Q gi|254780648|r 241 LHIVSALEENVQAAYQCILDELSAY--NSELRKKIEIVGLSQIDTVDSDTLARKKNEL----ATQCGQVPFEFSSITGHG 314 (335)
Q Consensus 241 l~VVD~s~~d~~~~~~~I~~EL~~y--~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l----~~~~~~~vi~ISA~tg~G 314 (335)
+||+|+++.+..++. .+||... ++.+.+.|.+|++||+|++++....++.+.+ ....++.++++||++|+|
T Consensus 89 I~VvD~sd~~~~~~~---~~~l~~~l~~~~~~~~piLi~~NK~Dl~~a~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~G 165 (182)
T PTZ00133 89 IFVVDSNDRERIGDA---RQELEKMLAEDELRNAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQG 165 (182)
T ss_pred EEEEECCCHHHHHHH---HHHHHHHHCCHHHCCCEEEEEECCCCCCCCCCHHHHHHHHCHHHHHCCCCEEEEEECCCCCC
T ss_conf 999966787899999---99999997144224885999970668778889999999969555615995899825758949
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999998545
Q gi|254780648|r 315 IPQILECLHDKIFSIR 330 (335)
Q Consensus 315 I~eL~~~I~e~L~~~r 330 (335)
|+|.+++|.+.+.+..
T Consensus 166 i~e~f~wL~~~ikk~~ 181 (182)
T PTZ00133 166 LYEGLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 8999999999999862
No 76
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.80 E-value=1.4e-19 Score=138.51 Aligned_cols=154 Identities=20% Similarity=0.199 Sum_probs=107.2
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 01124421677753035410145401212110000001026632986899822642124731167751234433333578
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
+-|-++|++||||||||+.+...... ... .|.-+++-.+..++..+.+.|++|= ..-+.+-. .+.+.|+.
T Consensus 20 ~kIlilGld~aGKTTil~~l~~~~~~-~~~--PT~Gfn~e~i~~~~~~~~~wDvgG~----~~~R~lW~---~Y~~~~~~ 89 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLA-QHV--PTLHPTSEELTIGNIKFKTFDLGGH----EQARRLWK---DYFPEVDG 89 (190)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCC-EEC--CCCCCCEEEEEECCEEEEEEECCCC----CCCCCCHH---HHHHCCCE
T ss_conf 48999906999889999998079953-152--6558745999989999999989998----45554388---88431137
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH---------------HHCCC
Q ss_conf 87520222211013466678998777--66750598899997465899889999999999---------------86299
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAY--NSELRKKIEIVGLSQIDTVDSDTLARKKNELA---------------TQCGQ 302 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y--~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~---------------~~~~~ 302 (335)
++||||+++.+-.+ ..++||+.. ++.+.+.|.+|++||+|++.+-...++.+.+. ...++
T Consensus 90 iIfVVDssD~~r~~---eak~~L~~lL~~~~l~~~PlLIlaNK~Dl~~a~~~~ei~~~L~L~~~~~~~~~~~~~~~~r~~ 166 (190)
T cd00879 90 IVFLVDAADPERFQ---ESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPI 166 (190)
T ss_pred EEEEEECCCHHHHH---HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 99999776778999---999999999855500698089998666776798999999883984201554433454577614
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 489998887889999999999999
Q gi|254780648|r 303 VPFEFSSITGHGIPQILECLHDKI 326 (335)
Q Consensus 303 ~vi~ISA~tg~GI~eL~~~I~e~L 326 (335)
.++++||++|+|++|-+++|.+.|
T Consensus 167 ~i~~csA~tG~Gl~egl~WLs~~l 190 (190)
T cd00879 167 EVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHC
T ss_conf 999655067968289999998549
No 77
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.79 E-value=2.7e-19 Score=136.83 Aligned_cols=148 Identities=20% Similarity=0.212 Sum_probs=101.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEEC-CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102----66329-86899822642124731167751234433333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEG-YKEFILADIPGIIKNAHQGAGIGDRFLKHTER 236 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~-~~~~~i~D~PGlIegA~~~~glG~~FLrhIer 236 (335)
|-++|.+|||||||++++...+. .+..|.+| .+..+ +.++.++|++|- ..-+.+... +.+.
T Consensus 2 ivilG~~~~GKTsil~r~~~~~~-------~~~~pTig~~~~~~~~~~~~~l~iwD~~G~----e~~~~~~~~---y~~~ 67 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAEL-------VTTIPTVGFNVEMLQLEKHLSLTVWDVGGQ----EKMRTVWKC---YLEN 67 (160)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-------CCCCCCCCEEEEEEEECCEEEEEEEECCCC----CCCCHHHHH---HHCC
T ss_conf 99999999999999999956987-------775776150389999899899999978986----247415887---7456
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH-----HHHHHHHCCCCEEEEECCC
Q ss_conf 57887520222211013466678998777667505988999974658998899999-----9999986299489998887
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARK-----KNELATQCGQVPFEFSSIT 311 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~-----~~~l~~~~~~~vi~ISA~t 311 (335)
++++++|+|+++....++.+....++-. +..+.+.|.+++.||+|+++.....++ .+++.+..++.++++||++
T Consensus 68 a~~iI~V~D~td~~~~~~~~~~~~~~l~-~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~~~~~~~~~~~~i~~~SAkt 146 (160)
T cd04156 68 TDGLVYVVDSSDEARLDESQKELKHILK-NEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVT 146 (160)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH-HHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 7789999856867887879999999986-635378749999986336566799999999869999853999999866884
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 8899999999999
Q gi|254780648|r 312 GHGIPQILECLHD 324 (335)
Q Consensus 312 g~GI~eL~~~I~e 324 (335)
|+||+++.++|..
T Consensus 147 Gegi~e~f~~la~ 159 (160)
T cd04156 147 GEGLAEAFRKLAS 159 (160)
T ss_pred CCCHHHHHHHHHC
T ss_conf 9599999999857
No 78
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.78 E-value=5.4e-19 Score=134.98 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=107.5
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298689982264212473116775123443333357887
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
|-++|.+||||||+++++...... . +..|.-.+.-.+...+..+.+.|++|= ..-+.+... +.+.|+.++
T Consensus 2 IlilGl~~sGKTtil~~l~~~~~~-~--~~pT~G~~~~~i~~~~~~l~iwD~gG~----~~~r~~w~~---Yy~~~~~iI 71 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFM-Q--PIPTIGFNVETVEYKNLKFTIWDVGGK----HKLRPLWKH---YYLNTQAVV 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-C--CCCCCCCCEEEEEECCEEEEEEECCCC----CCCCHHHHH---HCCCCCEEE
T ss_conf 999998999889999999579968-9--778688166999989889999989997----244636787---555762799
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH-----HHHHHCCCCEEEEECCCCCCHH
Q ss_conf 52022221101346667899877766750598899997465899889999999-----9998629948999888788999
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKN-----ELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~-----~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
||||+++.+-.+..+...+++-. +..+.++|.+|++||+|+.++....++.+ .+....++.++++||++|+|++
T Consensus 72 fVvDssd~~~~~ea~~~l~~ll~-~~~~~~~piLIlaNK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~i~~~SA~tG~Gi~ 150 (169)
T cd04158 72 FVVDSSHRDRVSEAHSELAKLLT-EKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLY 150 (169)
T ss_pred EEEECCHHHHHHHHHHHHHHHHH-HHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCEEEEEEECCCCCCHH
T ss_conf 99986306779999999999971-27537984999973556777989999999857054526996299955572795989
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999998545
Q gi|254780648|r 317 QILECLHDKIFSIR 330 (335)
Q Consensus 317 eL~~~I~e~L~~~r 330 (335)
|.+++|.+.|-+..
T Consensus 151 e~~~WL~~~ii~~~ 164 (169)
T cd04158 151 EGLDWLSRQLVAAG 164 (169)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998657
No 79
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.78 E-value=4.4e-19 Score=135.52 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=103.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298689982264212473116775123443333357887
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
|-++|.+|||||||++++...+.. ... .|.-.++-.+...+..+.+.|++|= ..-+.+-.. +.+.|+.++
T Consensus 16 ililG~~~~GKTsil~~l~~~~~~-~~~--pTvg~~~~~~~~~~~~l~iwD~~Gq----e~~r~l~~~---Yy~~a~~iI 85 (175)
T smart00177 16 ILMVGLDAAGKTTILYKLKLGESV-TTI--PTIGFNVETVTYKNISFTVWDVGGQ----DKIRPLWRH---YYTNTQGLI 85 (175)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-CCC--CCCCCEEEEEEECCEEEEEEECCCC----CCCCHHHHH---HCCCCCEEE
T ss_conf 999988999989999999659977-757--9788107999989899999989998----545536777---557761899
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCH
Q ss_conf 520222211013466678998777--66750598899997465899889999999999----862994899988878899
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAY--NSELRKKIEIVGLSQIDTVDSDTLARKKNELA----TQCGQVPFEFSSITGHGI 315 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y--~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~----~~~~~~vi~ISA~tg~GI 315 (335)
||+|+++.+..++. .++|... .+.+.+.|.+|++||+|+++.....++.+++. +..++.++++||++|+||
T Consensus 86 fVvD~sd~~~~~~~---~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~GI 162 (175)
T smart00177 86 FVVDSNDRDRIDEA---REELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGL 162 (175)
T ss_pred EEEECCCHHHHHHH---HHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCCCCCH
T ss_conf 99866877899999---999999963153169869999845667678899999999686654079759998268789698
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q gi|254780648|r 316 PQILECLHDKIF 327 (335)
Q Consensus 316 ~eL~~~I~e~L~ 327 (335)
+|.+++|.+.+.
T Consensus 163 ~e~f~wL~~~ik 174 (175)
T smart00177 163 YEGLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999844
No 80
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.78 E-value=4.3e-19 Score=135.55 Aligned_cols=152 Identities=19% Similarity=0.200 Sum_probs=101.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298689982264212473116775123443333357887
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
|-++|.+|||||||++++..... ...+ .|.-.+.-.+...+..+.+.|++|- ..-+.+-.. +...|+.++
T Consensus 3 ililG~~~sGKTsll~~l~~~~~-~~~~--pT~g~~~~~~~~~~~~l~iwD~~G~----~~~r~l~~~---Y~~~a~~iI 72 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKLGEI-VTTI--PTIGFNVETVEYKNISFTVWDVGGQ----DKIRPLWRH---YFQNTQGLI 72 (159)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCC--CCCCCCEEEEEECCEEEEEEECCCC----CCCCHHHHH---HCCCCCEEE
T ss_conf 99999999998999999972996-7758--9687017999989899999978997----214656786---476873899
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH----HHHCCCCEEEEECCCCCCHHH
Q ss_conf 5202222110134666789987776675059889999746589988999999999----986299489998887889999
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNEL----ATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l----~~~~~~~vi~ISA~tg~GI~e 317 (335)
||+|+++.+..++......++-. ++.+.+.|.+|+.||+|+++.....++.+.+ .+..++.++++||++|+|++|
T Consensus 73 ~VvD~sd~~~~~~~~~~l~~~l~-~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~Gv~e 151 (159)
T cd04150 73 FVVDSNDRERIGEAREELQRMLN-EDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYE 151 (159)
T ss_pred EEEECCCHHHHHHHHHHHHHHHC-CHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCEEEEEEECCCCCCHHH
T ss_conf 99977777899999999999962-35336982999997566778989999999968666637985999826867939899
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780648|r 318 ILECLHD 324 (335)
Q Consensus 318 L~~~I~e 324 (335)
.+++|.+
T Consensus 152 ~f~WL~~ 158 (159)
T cd04150 152 GLDWLSN 158 (159)
T ss_pred HHHHHHC
T ss_conf 9999855
No 81
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.78 E-value=5.8e-19 Score=134.80 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=100.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298689982264212473116775123443333357887
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
|-++|.+|||||||++++...+ +..+ -.|.-.++..+...+..+.+.|++|-- .-+.+-.. +.+.++.++
T Consensus 18 ililG~~~sGKTsil~~l~~~~--~~~~-~pT~G~~~~~i~~~~~~~~iwD~~G~e----~~~~~~~~---y~~~a~~ii 87 (174)
T cd04153 18 VIIVGLDNAGKTTILYQFLLGE--VVHT-SPTIGSNVEEIVYKNIRFLMWDIGGQE----SLRSSWNT---YYTNTDAVI 87 (174)
T ss_pred EEEECCCCCCHHHHHHHHHCCC--CCCC-CCCCCCCEEEEEECCEEEEEEECCCCC----CCCCHHHH---HHCCCCEEE
T ss_conf 9999899998899999997399--2771-672360469999788899999899986----56622677---705775379
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH----HHHCCCCEEEEECCCCCCHHH
Q ss_conf 5202222110134666789987776675059889999746589988999999999----986299489998887889999
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNEL----ATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l----~~~~~~~vi~ISA~tg~GI~e 317 (335)
||+|+++....+.......++-. ++.+.+.|.+|++||+|+.+.....++.+.+ .+..++.++++||++|+||++
T Consensus 88 ~VvD~sd~~~~~~~~~~l~~~l~-~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG~Gv~e 166 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLA-HEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHH-CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 99976788899999999999972-61016982899995555655789999999974777635980999966858919899
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780648|r 318 ILECLHD 324 (335)
Q Consensus 318 L~~~I~e 324 (335)
.+++|.+
T Consensus 167 ~f~wLa~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHHC
T ss_conf 9999866
No 82
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.77 E-value=6.6e-19 Score=134.43 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=106.5
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 01124421677753035410145401212110000001026632986899822642124731167751234433333578
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
+-|-++|+.||||||+++.+...... .. .-|.-+++..+...+..+.+.|+.|- ..-+.+-. .+.+.|+.
T Consensus 18 ~~ililGLd~aGKTTil~~lk~~~~~-~~--~PT~g~~~e~~~~~~~~~~~wDlgG~----~~~R~lW~---~Yy~~~~~ 87 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLA-QH--QPTQHPTSEELAIGNIKFTTFDLGGH----QQARRLWK---DYFPEVNG 87 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-CC--CCCCCCCEEEEEECCEEEEEEECCCC----HHHHHHHH---HHHCCCCE
T ss_conf 47999965889889999998069975-30--57878864899999999999988987----77889999---88216758
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHH-----HH------HCCCCEEE
Q ss_conf 87520222211013466678998777--6675059889999746589988999999999-----98------62994899
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAY--NSELRKKIEIVGLSQIDTVDSDTLARKKNEL-----AT------QCGQVPFE 306 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y--~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l-----~~------~~~~~vi~ 306 (335)
|+||||+++.+-.++. ++||... ++++.+.|.+|++||.|++.+-...++.+.+ .. ..++.+++
T Consensus 88 iIfVVDssD~~r~~ea---k~~L~~ll~~~~l~~~PlLilaNKqDl~~a~~~~ei~~~L~L~~~~~~~~~~~~r~~~i~~ 164 (184)
T smart00178 88 IVYLVDAYDKERFAES---KRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFM 164 (184)
T ss_pred EEEEEECCCHHHHHHH---HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCHHHHCCCCCCCCCCEEEEE
T ss_conf 9999726868899999---9999998646765597099999756777899999999881951232655766776319997
Q ss_pred EECCCCCCHHHHHHHHHHHH
Q ss_conf 98887889999999999999
Q gi|254780648|r 307 FSSITGHGIPQILECLHDKI 326 (335)
Q Consensus 307 ISA~tg~GI~eL~~~I~e~L 326 (335)
+||++|+|+++-+++|.+.+
T Consensus 165 ~SA~tG~Gl~egl~WLs~~i 184 (184)
T smart00178 165 CSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred EECCCCCCHHHHHHHHHHHC
T ss_conf 35607978699999998409
No 83
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.77 E-value=4.9e-19 Score=135.23 Aligned_cols=148 Identities=23% Similarity=0.223 Sum_probs=102.5
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102----66329868998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|-++|++|||||||++.+....+ .+..|++| .+..++..+.+.|++|- ..-+.+- -.+.+.+
T Consensus 2 ililGLd~aGKTTil~~l~~~~~-------~~~~PT~G~~~~~~~~~~~~l~~~DlgG~----~~~R~lW---~~Y~~~~ 67 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIP-------KKVAPTVGFTPTKLRLDKYEVCIFDLGGG----ANFRGIW---VNYYAEA 67 (167)
T ss_pred EEEEEECCCCHHHHHHHHCCCCC-------CCCCCCCCCCEEEEEECCEEEEEEECCCC----HHHHHHH---HHHCCCC
T ss_conf 89990089988999999828998-------76508777317999989999999989987----7888999---9873477
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH--HH-----CCCCEEEEECC
Q ss_conf 788752022221101346667899877766750598899997465899889999999999--86-----29948999888
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELA--TQ-----CGQVPFEFSSI 310 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~--~~-----~~~~vi~ISA~ 310 (335)
+.|+||||+++.+..++.+....+|- -++.+..+|.+|++||.|++.+-...++.+.+. +. ..+.++++||+
T Consensus 68 ~gIIfVVDssD~~rl~eak~~L~~lL-~~~~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~~l~~~~~~~~~I~~csA~ 146 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELL-QHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAI 146 (167)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHH-CCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCEEEEEECEEE
T ss_conf 65799985575889999999999996-58877899599998865761589999999881974240899863799957644
Q ss_pred CCCC------HHHHHHHHHH
Q ss_conf 7889------9999999999
Q gi|254780648|r 311 TGHG------IPQILECLHD 324 (335)
Q Consensus 311 tg~G------I~eL~~~I~e 324 (335)
+|+| +++-+++|..
T Consensus 147 tG~G~~~~~~l~eGl~WL~~ 166 (167)
T cd04161 147 EGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCCCCCCCHHHHHHHHHC
T ss_conf 48887876631549989864
No 84
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.76 E-value=3.7e-18 Score=129.88 Aligned_cols=155 Identities=21% Similarity=0.257 Sum_probs=105.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE----EE-----ECCEEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 124421677753035410145401212110000001026----63-----298689982264212473116775123443
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI----VK-----EGYKEFILADIPGIIKNAHQGAGIGDRFLK 232 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv----v~-----~~~~~~~i~D~PGlIegA~~~~glG~~FLr 232 (335)
|-++|.+|||||||++++.... |....|.+|. +. .....+.++||+|= ..-+.|...|
T Consensus 6 IvilG~~~~GKTsil~r~~~~~-------f~~~~pTiG~~~~~~~~~~~~~~~v~l~iwDtaGq----e~~r~l~~~Y-- 72 (183)
T cd04152 6 IVMLGLDSAGKTTVLYRLKFNE-------FVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ----EKLRPLWKSY-- 72 (183)
T ss_pred EEEECCCCCCHHHHHHHHHCCC-------CCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCC----CCCCEEHHHH--
T ss_conf 9999999998899999996498-------67768703557899999616786679999978987----3451008767--
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH---HHHHH--HHHHHHHCCCCEEEE
Q ss_conf 3333578875202222110134666789987776675059889999746589988---99999--999998629948999
Q gi|254780648|r 233 HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD---TLARK--KNELATQCGQVPFEF 307 (335)
Q Consensus 233 hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e---~~~~~--~~~l~~~~~~~vi~I 307 (335)
.+.++.+++|+|+++.+..++.....+++..+ ......|.+|+.||+|+.+.. ++.+. +.++....++.++++
T Consensus 73 -~r~a~g~i~V~D~td~~~~~~~~~~l~~~~~~-~~~~~~piliv~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~i~~t 150 (183)
T cd04152 73 -TRCTDGIVFVVDSVDVERMEEAKTELHKITRF-SENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPA 150 (183)
T ss_pred -HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHC-CCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf -46786789999677688999999999999732-1237962999986677766878899999971999866699899972
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 888788999999999999985452
Q gi|254780648|r 308 SSITGHGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 308 SA~tg~GI~eL~~~I~e~L~~~r~ 331 (335)
||++|+||++.+++|.+.+.+.+.
T Consensus 151 SA~tG~gI~e~f~~L~~~i~~r~~ 174 (183)
T cd04152 151 CAIIGEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 799796989999999999999998
No 85
>pfam01926 MMR_HSR1 GTPase of unknown function.
Probab=99.76 E-value=2.8e-19 Score=136.67 Aligned_cols=104 Identities=38% Similarity=0.546 Sum_probs=85.9
Q ss_pred CCCEEEEEECCC-CCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 753035410145-4012121100000010266329868998226421247311677-51234433333578875202222
Q gi|254780648|r 171 GKSTFLASVTRA-KPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAG-IGDRFLKHTERTHVLLHIVSALE 248 (335)
Q Consensus 171 GKSTLln~ls~a-k~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~g-lG~~FLrhIer~~vLl~VVD~s~ 248 (335)
|||||+|+|++. .+.|++||+||++++.+.+..++.++.++|+||+++..+.... +..+++++++++++++||+|+++
T Consensus 1 GKSsLiN~L~~~~~~~v~~~~gtT~~~~~~~~~~~~~~i~liDTPGi~~~~~~~~~~~~~~~~~~~~~~d~il~viD~~~ 80 (106)
T pfam01926 1 GKSTLINALTGKKRAIVSDYPGTTRDPNEGRVELDGKQIILVDTPGIIEGASKGEGELGNRTLEAIEEADLILHVVDASE 80 (106)
T ss_pred CHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 91279999978885555288998846355899889988999837873226504678889999972345737999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 11013466678998777667505988999974
Q gi|254780648|r 249 ENVQAAYQCILDELSAYNSELRKKIEIVGLSQ 280 (335)
Q Consensus 249 ~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNK 280 (335)
.....+.+.+ +.+.. .++|.++|+||
T Consensus 81 ~~~~~d~~~~-~~l~~-----~~~p~iiv~NK 106 (106)
T pfam01926 81 GLTEEDLEIL-DLLLE-----LGKPVILVLNK 106 (106)
T ss_pred CCCHHHHHHH-HHHHH-----CCCCEEEEEEC
T ss_conf 9998999999-99998-----69988999939
No 86
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.76 E-value=2.4e-18 Score=131.09 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=100.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298689982264212473116775123443333357887
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
|-++|.+|||||||++++...+.. ... .|.-.++..+...+.++.+.|++|- ..-+.|-..| .+.++.++
T Consensus 12 ililG~~~sGKTsil~~l~~~~~~-~~~--pTvg~~~~~~~~~~~~l~iwD~~Gq----e~~r~l~~~y---~~~~~~ii 81 (168)
T cd04149 12 ILMLGLDAAGKTTILYKLKLGQSV-TTI--PTVGFNVETVTYKNVKFNVWDVGGQ----DKIRPLWRHY---YTGTQGLI 81 (168)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-CCC--CCCCCEEEEEEECCEEEEEEECCCC----CCCCCHHHHH---CCCCCEEE
T ss_conf 999999999989999999669987-602--6267007999989889999989999----7466065764---37886689
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH--H--HHCCCCEEEEECCCCCCHHH
Q ss_conf 5202222110134666789987776675059889999746589988999999999--9--86299489998887889999
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNEL--A--TQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l--~--~~~~~~vi~ISA~tg~GI~e 317 (335)
||+|+++.+..++......++-. ++.+.+.|.+|++||+|+.+.-...++.+.+ . +..++.++++||++|+||+|
T Consensus 82 fVvDstd~~~~~~~~~~l~~~l~-~~~~~~~pilI~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~Gv~e 160 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIIN-DREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHH-CHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 99837767899999999999971-45227986999997566777889999999978765517980999806878969799
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780648|r 318 ILECLHD 324 (335)
Q Consensus 318 L~~~I~e 324 (335)
.+++|.+
T Consensus 161 ~f~WL~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHHC
T ss_conf 9999865
No 87
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.74 E-value=6.1e-18 Score=128.61 Aligned_cols=146 Identities=23% Similarity=0.276 Sum_probs=99.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102----66329868998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|-++|.++||||||++++...+. .+..|.+| .+...+..+.++|++|= ..-+.+-..| ...|
T Consensus 2 il~lG~~~~GKTsll~~~~~~~~-------~~~~pTig~~~~~i~~~~~~~~iwD~~G~----e~~r~~~~~y---~~~~ 67 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEV-------VTTIPTIGFNVETVTYKNLKFQVWDLGGQ----TSIRPYWRCY---YSNT 67 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-------CCCCCCCCCCEEEEEECCEEEEEEECCCC----CCCCHHHHHH---CCCC
T ss_conf 99999999989999999970996-------77578488246999989889999967986----2446278874---6678
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHH----HHHCCCCEEEEECCC
Q ss_conf 7887520222211013466678998777--6675059889999746589988999999999----986299489998887
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAY--NSELRKKIEIVGLSQIDTVDSDTLARKKNEL----ATQCGQVPFEFSSIT 311 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y--~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l----~~~~~~~vi~ISA~t 311 (335)
++++||+|+++.+.. +..++||... ...+.+.|.+|++||+|+.......++.+.+ .+..++.+|++||++
T Consensus 68 ~~ii~VvD~sd~~~~---~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~tSA~t 144 (158)
T cd04151 68 DAIIYVVDSTDRDRL---GTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIK 144 (158)
T ss_pred CEEEEEEECCCHHHH---HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 899999745787899---99999999998346536981999997667765779999999985987416996899967878
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 8899999999999
Q gi|254780648|r 312 GHGIPQILECLHD 324 (335)
Q Consensus 312 g~GI~eL~~~I~e 324 (335)
|+||+|++++|..
T Consensus 145 G~gV~e~f~wL~~ 157 (158)
T cd04151 145 GEGLDEGMDWLVN 157 (158)
T ss_pred CCCHHHHHHHHHC
T ss_conf 9399999999856
No 88
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=99.74 E-value=8.9e-18 Score=127.58 Aligned_cols=155 Identities=16% Similarity=0.146 Sum_probs=106.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEE--CCEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000--102663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYP--NLGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P--~lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|.+||-|++|||||++++.+.+- ...|. +|... ..-.+..++ ..+.++|+||. |.- ..+-.. .++.+
T Consensus 2 i~vvG~~~vGKTsli~r~~~~~f-~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-e~~---~~~~~~---~~~~a 72 (162)
T pfam00071 2 LVLVGDGGVGKSSLLIRFTQNKF-PEEYI-PTIGVDFYTKTIEVDGKTVKLQIWDTAGQ-ERF---RALRPL---YYRGA 72 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCEEEEEEEEEEECCEEEEEEEEECCCC-HHH---HHHHHH---HHCCC
T ss_conf 89999799779999999961999-98747-74135567899999999999999978987-204---678899---86257
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 7887520222211013466678998777667505988999974658998899-999999998629948999888788999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
+++++|.|++++...+..+.+.+++..+.+ .+.|.++|.||+|+.+.... .+..+++.+..+.+.+++||++|.||+
T Consensus 73 d~~iivfd~~~~~S~~~i~~~~~~i~~~~~--~~~piilvgnK~Dl~~~~~i~~~e~~~~a~~~~~~y~e~Sak~g~gI~ 150 (162)
T pfam00071 73 QGFLLVYDITSRDSFENVKKWLEEILRHAD--DNVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVE 150 (162)
T ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHCC--CCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHH
T ss_conf 655042348988999999999999998579--886288997524746518899999999999809979997378882999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999998
Q gi|254780648|r 317 QILECLHDKIF 327 (335)
Q Consensus 317 eL~~~I~e~L~ 327 (335)
++...|.+.+.
T Consensus 151 ~~F~~i~~~il 161 (162)
T pfam00071 151 EAFEELAREIL 161 (162)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999967
No 89
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.70 E-value=4.2e-17 Score=123.49 Aligned_cols=159 Identities=13% Similarity=0.154 Sum_probs=113.2
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010--2663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|-+||-+.||||||+++.....-....|+ +|+.... =.+..++ ..+.|+|++|--+- ..|-. -+...+
T Consensus 3 ivlvGd~~VGKTsLi~r~~~~~f~~~~y~-~tig~~~~~k~i~v~~~~v~l~iwDtaG~e~~----~~l~~---~y~~~a 74 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHRFLVGPYQ-NTIGAAFVAKRMVVGERVVTLGIWDTAGSERY----EAMSR---IYYRGA 74 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCC-CCCEEEEEEEEEEECCEEEEEEEEECCCCHHH----HHHHH---HHHCCC
T ss_conf 99999699879999999985979989978-76305889999999999999999919997312----35579---883477
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH-----HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 78875202222110134666789987776675059889999746589988-----9999999999862994899988878
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD-----TLARKKNELATQCGQVPFEFSSITG 312 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e-----~~~~~~~~l~~~~~~~vi~ISA~tg 312 (335)
++++.|.|+++++..+.+..+.+|+..+.+ +-|.++|.||+||.+.+ --.+..+++.+..+...|.+||+++
T Consensus 75 ~~~ilvydit~~~Sf~~i~~W~~~i~~~~~---~~~iilVGnK~DL~~~~~~~r~V~~~e~~~~a~~~~~~~~E~SAktg 151 (193)
T cd04118 75 KAAIVCYDLTDSSSFERAKFWVKELQNLEE---HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTG 151 (193)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 445788306987999989999999997489---99979997746632201666446899999999980996999838989
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999985452
Q gi|254780648|r 313 HGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 313 ~GI~eL~~~I~e~L~~~r~ 331 (335)
+||+++.+.|.+.+.+...
T Consensus 152 ~nV~e~F~~la~~i~~~~~ 170 (193)
T cd04118 152 QNVDELFQKVAEDFVSRAN 170 (193)
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 3989999999999997652
No 90
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.69 E-value=7.9e-17 Score=121.83 Aligned_cols=152 Identities=20% Similarity=0.238 Sum_probs=104.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010--26632986--8998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|.+||.+|||||||++++.+.+- ..+|. .|+.+.. -.+..++. .+.++||||.-+ -+.+... ++..+
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~f-~~~~~-~Tig~d~~~~~~~~~~~~~~l~iwDt~G~e~----~~~l~~~---~~~~~ 73 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGKF-DENYK-STIGVDFKSKTIEIDGKTVKLQIWDTAGQER----FRSITPS---YYRGA 73 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCEEEEEEEEEECCEEEEEEEEECCCCHH----HHHHHHH---HHHHC
T ss_conf 99999699689999999970999-99848-8666479999999999999999997898265----7788999---97541
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 788752022221101346667899877766750598899997465899889-9999999998629948999888788999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
+++++|.|+++++..+.++.+.+++..+.. .+.|.++|.||+||.++.. ..+..+.+.+..+.+.+.+||++++||+
T Consensus 74 d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~--~~~~iilvgnK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~~~~i~ 151 (159)
T cd00154 74 HGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVE 151 (159)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEECCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 275672448988999999999999998689--888269999745630116899999999999869979998768881989
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780648|r 317 QILECLHD 324 (335)
Q Consensus 317 eL~~~I~e 324 (335)
++.+.|.+
T Consensus 152 ~~F~~i~~ 159 (159)
T cd00154 152 ELFQSLAE 159 (159)
T ss_pred HHHHHHHC
T ss_conf 99999869
No 91
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.69 E-value=4.6e-17 Score=123.24 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=105.1
Q ss_pred EEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEEC--CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 44216777530354101454012121100000010266329--8689982264212473116775123443333357887
Q gi|254780648|r 164 IIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEG--YKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 164 lVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~--~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
+||.|++|||||++++.+.+.....+|-|+.......+..+ ..++.++|+||..+-... . ...+..+++++
T Consensus 1 vvG~~~~GKSsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~---~~~~~~~~~~i 73 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSL----R---RLYYRGADGII 73 (157)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHH----H---HHHHHHCCEEE
T ss_conf 9294996889999999719888764687157899999999999999999985895115678----9---99975357999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH--HHHHHHHCCCCEEEEECCCCCCHHHHH
Q ss_conf 520222211013466678998777667505988999974658998899999--999998629948999888788999999
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARK--KNELATQCGQVPFEFSSITGHGIPQIL 319 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~--~~~l~~~~~~~vi~ISA~tg~GI~eL~ 319 (335)
+|+|++++...+..+.+...+.. .....+.|.++|.||+|+.+....... ...+.+....+++++||+++.|++++.
T Consensus 74 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 152 (157)
T cd00882 74 LVYDVTDRESFENVKEWLLLILI-NKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELF 152 (157)
T ss_pred EEEECCCHHHHHHHHHHHHHHHH-HHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
T ss_conf 99865888889999999999999-75258984999985356154066889999999998789869998478883999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780648|r 320 ECLH 323 (335)
Q Consensus 320 ~~I~ 323 (335)
+.|.
T Consensus 153 ~~i~ 156 (157)
T cd00882 153 EELA 156 (157)
T ss_pred HHHH
T ss_conf 9985
No 92
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.69 E-value=1.2e-16 Score=120.73 Aligned_cols=149 Identities=21% Similarity=0.180 Sum_probs=92.1
Q ss_pred CEEEEECCCCCCCEEEEEE---CCCCCHH------HHHH------HCCCEECCEEEEE---C--CEEEEEECCCCCCCCC
Q ss_conf 1124421677753035410---1454012------1211------0000001026632---9--8689982264212473
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASV---TRAKPKI------ADYP------FTTLYPNLGIVKE---G--YKEFILADIPGIIKNA 220 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~l---s~ak~kI------a~yp------FTT~~P~lGvv~~---~--~~~~~i~D~PGlIegA 220 (335)
.||++|-+++|||||+.+| |++-.+- -|+. .-|.....-.+.+ + ...+.|+|+||-
T Consensus 2 NiaiiGHvd~GKTTL~~~ll~~tg~i~~~~~~~~~~D~~~~E~eRgiTi~~~~~~~~~~~~~~~~~~in~iDtPGh---- 77 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH---- 77 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEECCCCCCEEEEEEECCCC----
T ss_conf 5999948998989999999998599541457324416517678638668743368884136787148999989986----
Q ss_pred CCCCCCHHHH----HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 1167751234----433333578875202222110134666789987776675059889999746589988999999999
Q gi|254780648|r 221 HQGAGIGDRF----LKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNEL 296 (335)
Q Consensus 221 ~~~~glG~~F----LrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l 296 (335)
. +| .+-+.-++..+.|||+.+---.+..+ ....... ...|.++|+||+|+...+ ..+..+++
T Consensus 78 -~------dF~~~~~~al~~~D~allVVda~~Gv~~qT~~-~~~~a~~-----~~~p~ivviNKiD~~~ad-~~~v~~~i 143 (179)
T cd01890 78 -V------DFSYEVSRSLAACEGALLLVDATQGVEAQTLA-NFYLALE-----NNLEIIPVINKIDLPSAD-PERVKQQI 143 (179)
T ss_pred -C------CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHH-HHHHHHH-----CCCCEEEEEECCCCCCCC-HHHHHHHH
T ss_conf -4------51778988997544278998647787374899-9999987-----699889998655567789-99999999
Q ss_pred HHHCC---CCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 98629---94899988878899999999999998
Q gi|254780648|r 297 ATQCG---QVPFEFSSITGHGIPQILECLHDKIF 327 (335)
Q Consensus 297 ~~~~~---~~vi~ISA~tg~GI~eL~~~I~e~L~ 327 (335)
.+.++ .++++|||++|+|+++|++.|.+.+.
T Consensus 144 ~~~~g~~~~~~v~vSA~~g~gv~~Ll~~i~~~ip 177 (179)
T cd01890 144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9986889767488437889798999999996488
No 93
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=6.5e-17 Score=122.34 Aligned_cols=161 Identities=14% Similarity=0.161 Sum_probs=113.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010--2663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|.+||-++||||||+.+++...-.-.+|. +|..... -++..++ ..+.|+|++|-- .-+.+-.. +...+
T Consensus 3 Iv~vGd~~VGKTsli~r~~~~~f~~~~~~-~Ti~~~~~~k~~~~~~~~v~l~iwDtaG~e----~~~~l~~~---~~~~a 74 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDGAFLNGNFI-ATVGIDFRNKVVTVDGVKVKLQIWDTAGQE----RFRSVTHA---YYRDA 74 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCC-CCCCEEEEEEEEEECCEEEEEEEEECCCCC----CCCCCHHH---HHHCC
T ss_conf 99999499879999999995978999867-765247799999999999999999799863----34646477---71177
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 7887520222211013466678998777667505988999974658998899-999999998629948999888788999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
++++.|.|+++++..+.++.+.+|+..+.. .+.|.++|.||+||.+.... .+..+.+.+..+.+.|.+||++++||+
T Consensus 75 ~~~ilvydit~~~Sf~~l~~w~~~i~~~~~--~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~~~f~EtSAkt~~nI~ 152 (191)
T cd04112 75 HALLLLYDITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVE 152 (191)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 778999727988999999999999998666--785389861246553026799999999999829979998548980979
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999854523
Q gi|254780648|r 317 QILECLHDKIFSIRGE 332 (335)
Q Consensus 317 eL~~~I~e~L~~~r~e 332 (335)
++.+.|.+.+...+.+
T Consensus 153 e~F~~i~~~i~~~~~~ 168 (191)
T cd04112 153 LAFTAVAKELKHRKYE 168 (191)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999874227
No 94
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.68 E-value=2.1e-16 Score=119.30 Aligned_cols=154 Identities=16% Similarity=0.085 Sum_probs=109.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE--EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102--663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG--IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG--vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|.+||-++||||||+++.....= ..+|. +|....+- .+..++ ..+.|+||||-- +-..+... +...+
T Consensus 3 ivllGd~~VGKTsli~r~~~~~f-~~~~~-~Tig~~~~~~~~~~~~~~~~l~iwDtaG~e----~f~~~~~~---y~~~a 73 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDGY-EPQQL-STYALTLYKHNAKFEGKTILVDFWDTAGQE----RFQTMHAS---YYHKA 73 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCEEEEEEEEEECCEEEEEEEEECCCCC----CCCHHHHH---HHCCC
T ss_conf 99999899678999999980977-99726-654157999999999999999999799984----34324699---73568
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 78875202222110134666789987776675059889999746589988999999999986299489998887889999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
++++.|.|.++++..+.++.+.+++..+.+ +.|.++|.||+||... ..+...++.+..+.+.|.+||++|+||++
T Consensus 74 ~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~---~~p~ilVgNK~DL~~~--~~~~~~~~a~~~~~~f~etSAk~g~nV~e 148 (161)
T cd04124 74 HACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLDPS--VTQKKFNFAEKHNLPLYYVSAADGTNVVK 148 (161)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCH--HHHHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf 767999968977889999999999998686---9989999997117742--58999999998699199990783809799
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999854
Q gi|254780648|r 318 ILECLHDKIFSI 329 (335)
Q Consensus 318 L~~~I~e~L~~~ 329 (335)
+.+.+.+.+.+.
T Consensus 149 ~F~~l~~~~i~~ 160 (161)
T cd04124 149 LFQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999844
No 95
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.68 E-value=1.5e-16 Score=120.09 Aligned_cols=160 Identities=17% Similarity=0.217 Sum_probs=113.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010--2663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|.|||-++||||||+.+++..+- ..+|. +|+.... -.+..++ ..+.|+||+|-- .-..+...| ...+
T Consensus 9 IvlvGd~~VGKTSli~r~~~~~F-~~~~~-~Tig~d~~~k~v~i~~~~v~l~iwDtaGqe----~~~~l~~~~---~~~a 79 (199)
T cd04110 9 LLIIGDSGVGKSSLLLRFADNTF-SGSYI-TTIGVDFKIRTVEINGERVKLQIWDTAGQE----RFRTITSTY---YRGT 79 (199)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCCC-CCCCEEEEEEEEEECCEEEEEEEEECCCCC----CCCCCHHHH---HHCC
T ss_conf 99999799888999999950999-99868-975558789999999999999999899981----235352666---4246
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 7887520222211013466678998777667505988999974658998899-999999998629948999888788999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
+++++|.|+++.+..+.+..+.++++.+. ...|.++|.||+|+.+.... .+..+++.+..+.+.|.+||++|+||+
T Consensus 80 ~~~ilvyDit~~~Sf~~l~~w~~~i~~~~---~~~~~ilVGNK~Dl~~~r~v~~~e~~~~a~~~~~~f~E~SAktg~nV~ 156 (199)
T cd04110 80 HGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVE 156 (199)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHC---CCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHH
T ss_conf 54238971798899999999999999759---987579998855447546999999999999869979998689992989
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999998545230
Q gi|254780648|r 317 QILECLHDKIFSIRGEN 333 (335)
Q Consensus 317 eL~~~I~e~L~~~r~e~ 333 (335)
++.+.|.+.+.+.+.++
T Consensus 157 e~F~~i~~~i~~~~~~~ 173 (199)
T cd04110 157 EMFNCITELVLRAKKDN 173 (199)
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999974642
No 96
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=1.4e-16 Score=120.34 Aligned_cols=162 Identities=16% Similarity=0.170 Sum_probs=114.2
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC--CEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001--02663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN--LGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~--lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|.+||-++||||||+.++....- ..+|. .|+... .-.+..++ ..+.|+|++|--+ -..+-.. ++..+
T Consensus 3 ivvvGd~~VGKTsli~r~~~~~f-~~~~~-~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~----~~~l~~~---~~~~a 73 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTEDEF-SESTK-STIGVDFKIKTVYIENKIIKLQIWDTNGQER----FRSLNNS---YYRGA 73 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCEEEEEEEEEECCEEEEEEEEECCCCHH----HHHHHHH---HHCCC
T ss_conf 99999999789999999951968-99868-8654035799999999999999998999710----4578999---86378
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 7887520222211013466678998777667505988999974658998899-999999998629948999888788999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
++++.|.|+++++..+.+..+.+++..+.+ ...|.++|.||+||.+.... .+..+++.+..+.+.|.+||++++||+
T Consensus 74 ~~~ilvydit~~~Sf~~l~~w~~~i~~~~~--~~~~iilvgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAktg~nV~ 151 (188)
T cd04125 74 HGYLLVYDVTDQESFENLKFWINEINRYAR--ENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVE 151 (188)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHCC--CCCCEEEECCHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 679998038987899999999999998789--866245100134476606799999999999869989997478890989
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 999999999985452303
Q gi|254780648|r 317 QILECLHDKIFSIRGENE 334 (335)
Q Consensus 317 eL~~~I~e~L~~~r~e~E 334 (335)
++.+.|.+.+.+.+.+.|
T Consensus 152 e~F~~l~~~i~~~~~~~~ 169 (188)
T cd04125 152 EAFILLVKLIIKRLEEQE 169 (188)
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999999999876165
No 97
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.67 E-value=2e-16 Score=119.35 Aligned_cols=156 Identities=12% Similarity=0.109 Sum_probs=107.2
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298--6899822642124731167751234433333578
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
|.+||-++||||||++++.+.+- ..+|.=|.-.-..-.+..++ ..+.++|++|.-+ -..+-.. .+..+++
T Consensus 2 i~ivG~~~vGKTsli~r~~~~~f-~~~~~pTi~~~~~~~~~~~~~~~~l~i~Dt~g~~~----~~~~~~~---~~~~a~~ 73 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE----FSAMRDL---YIRQGDG 73 (160)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHH----HHHHHHH---HHHHCCE
T ss_conf 99999699679999999961959-98778830048999999766999999997999623----5578899---9764368
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 87520222211013466678998777667505988999974658998899-99999999862994899988878899999
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
++.|.|+++....+....+.+++..+... ...|.++|.||+|+.+.... .+..+.+.+..+.+.+.+||++|+||+++
T Consensus 74 ~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~V~~~e~~~~a~~~~~~y~e~Sak~g~nV~e~ 152 (160)
T cd00876 74 FILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEV 152 (160)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 99973289878999999999999997287-88629999974562230789999999999984997999847989498999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780648|r 319 LECLHDKI 326 (335)
Q Consensus 319 ~~~I~e~L 326 (335)
...|.+.+
T Consensus 153 F~~i~~~i 160 (160)
T cd00876 153 FKLLVREI 160 (160)
T ss_pred HHHHHHHC
T ss_conf 99999729
No 98
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.66 E-value=2.4e-16 Score=118.87 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=108.2
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010--2663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|.+||-++||||||++++...+- ...|. .|..... -.+..++ ..+.++|+||-- +-..+-. .++..+
T Consensus 3 i~vvG~~~vGKTsli~r~~~~~f-~~~~~-~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e----~~~~l~~---~~~~~~ 73 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGKF-SEQYK-STIGVDFKTKTIEVDGKRVKLQIWDTAGQE----RFRSITS---SYYRGA 73 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCEEEEEEEEEECCEEEEEEEEECCCCH----HHHHHHH---HHHCCC
T ss_conf 99999899779999999941999-99868-845666677999999999999999679944----6647799---883366
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 7887520222211013466678998777667505988999974658998899-999999998629948999888788999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
+++++|.|+++++..+.++.+.+++..+.. .+-|.++|.||+|+.+.... .+....+.+..+.+.+.+||++++||+
T Consensus 74 ~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~--~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAk~~~~v~ 151 (164)
T smart00175 74 VGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVE 151 (164)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCC--CCCCEEECCCCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 536884368998999999999999998679--998255116456856518799999999999849979998316690889
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999985
Q gi|254780648|r 317 QILECLHDKIFS 328 (335)
Q Consensus 317 eL~~~I~e~L~~ 328 (335)
++.+.|.+.+.+
T Consensus 152 e~F~~l~~~i~k 163 (164)
T smart00175 152 EAFEELAREILK 163 (164)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999971
No 99
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.66 E-value=1.8e-16 Score=119.68 Aligned_cols=155 Identities=18% Similarity=0.228 Sum_probs=108.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010--2663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|.++|-+++|||||++++....- ...|+ .|+.+.. -.+..++ ..+.++|+||.-+ -..+-..| +..+
T Consensus 3 ivvvG~~~vGKTsli~r~~~~~f-~~~~~-~ti~~~~~~~~~~~~~~~~~l~iwDt~g~~~----~~~~~~~~---~~~a 73 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDDTF-DPDLA-ATIGVDFKVKTLTVDGKKVKLAIWDTAGQER----FRTLTSSY---YRGA 73 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCCCCEEEEEEECCEEEEEEEEECCCCCC----CCCCHHHH---HHHC
T ss_conf 99999799579999999963999-99848-7313342389999999999999999999842----35342244---1321
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 78875202222110134666789987776675059889999746589988999999999986299489998887889999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
+++++|.|+++++..+.++.+.+++..+... ...|.++|.||+|+.+..-..+...++.+..+.+.+.+||++++||++
T Consensus 74 ~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~-~~~~~ilVgnK~D~~~~~v~~~~~~~~a~~~~~~y~e~Sak~g~nV~~ 152 (161)
T cd01863 74 QGVILVYDVTRRDTFTNLETWLNELETYSTN-NDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQ 152 (161)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 5348997678265699999999999985688-887378873104400068999999999998699999971586815999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780648|r 318 ILECLHDKI 326 (335)
Q Consensus 318 L~~~I~e~L 326 (335)
+.+.|.+.+
T Consensus 153 ~F~~l~~~i 161 (161)
T cd01863 153 AFEELVEKI 161 (161)
T ss_pred HHHHHHHHC
T ss_conf 999999709
No 100
>PTZ00132 GTP-binding nuclear protein; Provisional
Probab=99.66 E-value=2.1e-16 Score=119.26 Aligned_cols=152 Identities=12% Similarity=0.115 Sum_probs=109.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------663298--6899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|-+||-++||||||+++.++..= ..+| .|++| .+..++ ..+.|+||+|-- +-..|-..|
T Consensus 9 IvllGd~~VGKTsLi~r~~~~~F-~~~y-----~pTig~d~~~~~~~~~~~~i~l~IwDTaGqe----~f~sl~~~y--- 75 (209)
T PTZ00132 9 LILVGDGGVGKTTFVKRHLTGEF-EKKY-----IATLGVEVHPLKFYTNRGKICFNVWDTAGQE----KFGGLRDGY--- 75 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCC----CCCCCCCHH---
T ss_conf 99999999678999999971996-9987-----7760279899999999999999999899974----455665144---
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 33357887520222211013466678998777667505988999974658998899999999998629948999888788
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGH 313 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~ 313 (335)
...++..+.|.|+++.+..+.+..+.+|+.++.. +.|.++|.||+||.+.....+. .++.+..+.+.|.+||++|+
T Consensus 76 yr~a~~~ilVfDit~~~SF~~l~~W~~ei~~~~~---~ipivLVGNK~DL~~r~V~~~~-~~~a~~~~~~f~EtSAKtg~ 151 (209)
T PTZ00132 76 YIKGQCAIIMFDVTSRITYKNVPNWHRDITRVCE---NIPIVLVGNKVDVKDRQVKAKQ-ITFHRKKNLQYYDISAKSNY 151 (209)
T ss_pred HCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCCCCHHH-HHHHHHCCCEEEEEECCCCC
T ss_conf 2489889998437887899999999999998689---9878999762322413557999-99999879989997268993
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998545
Q gi|254780648|r 314 GIPQILECLHDKIFSIR 330 (335)
Q Consensus 314 GI~eL~~~I~e~L~~~r 330 (335)
||+++...|.+.|...+
T Consensus 152 NV~e~F~~Lar~il~~~ 168 (209)
T PTZ00132 152 NFEKPFLWLARRLANDP 168 (209)
T ss_pred CHHHHHHHHHHHHHCCC
T ss_conf 97999999999984799
No 101
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.66 E-value=2.1e-16 Score=119.24 Aligned_cols=152 Identities=13% Similarity=0.127 Sum_probs=109.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------663298--6899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|.+||-++||||||++++....-. . +-.|++| .+..++ ..+.++|++|-= +-..+-. .+
T Consensus 6 ivlvGd~~vGKTsli~r~~~~~f~-~-----~~~~Tig~~~~~k~v~~~~~~i~l~iwDt~G~e----~~~~~~~---~y 72 (167)
T cd01867 6 LLLIGDSGVGKSCLLLRFSEDSFN-P-----SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE----RFRTITT---AY 72 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-C-----CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCC----CHHHHHH---HH
T ss_conf 999999997889999999609999-9-----868986468899999999999999999899970----0116679---98
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 33357887520222211013466678998777667505988999974658998899-99999999862994899988878
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITG 312 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg 312 (335)
+..+++++.|.|+++++..+.++.+..++..+.. .+.|.++|.||+||.+.... .+..+++.+..+.+.|.+||++|
T Consensus 73 ~~~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~--~~~~~ilVgNK~Dl~~~r~v~~~e~~~~a~~~~~~~~e~SAktg 150 (167)
T cd01867 73 YRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKAN 150 (167)
T ss_pred HHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC--CCCCEEEECCCCCCHHCCCCCHHHHHHHHHHHCCEEEEECCCCC
T ss_conf 5650588995568987999999999999998669--99705764212450230779999999999980996999822579
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8999999999999985
Q gi|254780648|r 313 HGIPQILECLHDKIFS 328 (335)
Q Consensus 313 ~GI~eL~~~I~e~L~~ 328 (335)
+||+++.+.|.+.+.+
T Consensus 151 ~nI~e~F~~l~~~i~~ 166 (167)
T cd01867 151 INVEEAFFTLAKDIKK 166 (167)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 0789999999999970
No 102
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.65 E-value=2.7e-16 Score=118.62 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=103.5
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102----66329868998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|-++|+.|||||||++++...++. .+..|++| .+...+..+.+.|++|= ..-+.+-. .+.+.|
T Consensus 2 IlilGLd~aGKTTil~~l~~~~~~------~~~~PT~Gf~~~~i~~~~~~l~~wDlgGq----~~~R~~W~---~Y~~~~ 68 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL------ESVVPTTGFNSVAIPTQDAIMELLEIGGS----QNLRKYWK---RYLSGS 68 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC------CCCCCCCCCCEEEEEECCEEEEEEECCCH----HHHHHHHH---HHHHCC
T ss_conf 999967999899999998169987------65356327746999989999999853752----88865699---871177
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH--H---CCCCEEEEECCCC
Q ss_conf 7887520222211013466678998777667505988999974658998899999999998--6---2994899988878
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELAT--Q---CGQVPFEFSSITG 312 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~--~---~~~~vi~ISA~tg 312 (335)
+.|+||||+++..- +...++||...-.+....|.+|++||.|++.+-...++.+.+.- . ..| .+..||++|
T Consensus 69 ~gIIfVVDssD~~r---l~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~s~~ei~~~L~L~~i~~~r~w-~iq~~s~~g 144 (164)
T cd04162 69 QGLIFVVDSADSER---LPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRW-ILQGTSLDD 144 (164)
T ss_pred CEEEEEEECCCHHH---HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCE-EEEEECCCC
T ss_conf 58999995688889---99999999999708799869999863243369999999986699463799988-997110479
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 89999999999999854
Q gi|254780648|r 313 HGIPQILECLHDKIFSI 329 (335)
Q Consensus 313 ~GI~eL~~~I~e~L~~~ 329 (335)
+|+++-++++.+.+.+.
T Consensus 145 ~gl~~~~~~l~~~~~~~ 161 (164)
T cd04162 145 DGSPSRMEAVKDLLSQL 161 (164)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 98589999999999998
No 103
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.65 E-value=2.2e-16 Score=119.18 Aligned_cols=157 Identities=11% Similarity=0.105 Sum_probs=109.1
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 0112442167775303541014540121211000000102------663298--68998226421247311677512344
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFL 231 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FL 231 (335)
|=|.|||-++||||||+++....+- ..+| .|++| .+..++ .++.|+||+|-- .-+.+-..
T Consensus 1 aKivlvGd~~VGKTsli~r~~~~~f-~~~y-----~~Tig~d~~~k~~~v~~~~~~l~iwDtaGqe----~f~~l~~~-- 68 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVF-DKNY-----KATIGVDFEMERFEILGVPFSLQLWDTAGQE----RFKCIAST-- 68 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCC----CCCCCHHH--
T ss_conf 9899999899898999999963988-9972-----5634505899999999999999999899997----46644377--
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH---HHHHHHHHHHCCCCEEEEE
Q ss_conf 3333357887520222211013466678998777667505988999974658998899---9999999986299489998
Q gi|254780648|r 232 KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL---ARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 232 rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~---~~~~~~l~~~~~~~vi~IS 308 (335)
+.+.+++++.|.|+++++..+..+.+.+++.++.. ...-|.++|.||+||.+.++. .+....+.+..+.+.|.+|
T Consensus 69 -y~r~a~~~ilvyDvt~~~Sf~~~~~w~~~~~~~~~-~~~~~i~LvgNK~DL~~~~~~~~~~~~~~~~a~~~~~~~~E~S 146 (170)
T cd04108 69 -YYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVS 146 (170)
T ss_pred -HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCEEEEEC
T ss_conf -73278758999978987899999999999998508-9998299999841379875576448999999987798799985
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8878899999999999998545
Q gi|254780648|r 309 SITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 309 A~tg~GI~eL~~~I~e~L~~~r 330 (335)
|++|+||+++.+.|.+.+.++.
T Consensus 147 Ak~g~nV~e~F~~ia~~~~e~~ 168 (170)
T cd04108 147 ALSGENVREFFFRVAALTFELG 168 (170)
T ss_pred CCCCCCHHHHHHHHHHHHHHHC
T ss_conf 5788187999999999998644
No 104
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=3.2e-16 Score=118.12 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=108.5
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------663298--6899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|.+||-++||||||+.++....- ..+| .|++| .+..++ ..+.++||+|--+ -..+-. .+
T Consensus 10 ivllGd~~VGKTsli~r~~~~~f-~~~~-----~~Tig~d~~~k~i~~~~~~v~l~iwDtaG~e~----~~~l~~---~~ 76 (169)
T cd04114 10 IVLIGNAGVGKTCLVRRFTQGLF-PPGQ-----GATIGVDFMIKTVEIKGEKIKLQIWDTAGQER----FRSITQ---SY 76 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCCC----CCCCHH---HH
T ss_conf 99999899799999999985989-9986-----77412478999999999999999998999844----451557---77
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 3335788752022221101346667899877766750598899997465899889-999999999862994899988878
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSITG 312 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~tg 312 (335)
+..+++++.|.|+++++..+.+..+.+++..+.+ .+.|.++|.||+||.+... ..+..+++.+..+.+.|.+||++|
T Consensus 77 ~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~--~~~~~ilVGNK~DL~~~r~v~~~~~~~~a~~~~~~~~E~SAktg 154 (169)
T cd04114 77 YRSANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKES 154 (169)
T ss_pred HHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 4236645998148988899999999999998689--88638973113434541788999999999988999999868988
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 89999999999999
Q gi|254780648|r 313 HGIPQILECLHDKI 326 (335)
Q Consensus 313 ~GI~eL~~~I~e~L 326 (335)
+||+++...|.+.|
T Consensus 155 ~nV~e~F~~la~~l 168 (169)
T cd04114 155 DNVEKLFLDLACRL 168 (169)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 08899999999987
No 105
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.65 E-value=4e-16 Score=117.57 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=109.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------663298--6899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|.+||-++||||||+++.+..+- ..+| .|.+| .+..++ ..+.++||+|-= +-..+-.. +
T Consensus 3 IvllGd~~VGKTsli~r~~~~~f-~~~~-----~~Tig~~~~~k~v~~~~~~i~l~iwDtaGqe----~~~~~~~~---y 69 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFTDNEF-HSSH-----ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE----RYQTITKQ---Y 69 (161)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCC-----CCCCEEEEEEEEEEECCEEEEEEEEECCCCC----CCCCCHHH---H
T ss_conf 99999499858999999942998-9987-----8872089889999999999999999799960----23635588---8
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 33357887520222211013466678998777667505988999974658998899-99999999862994899988878
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITG 312 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg 312 (335)
+..+++.+.|.|+++++..+.+..+.+|+.++.+ ..-|.++|.||+|+.+.... .+..+++.+..+.+.|.+||+++
T Consensus 70 ~r~a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~--~~~~~ilVgNK~Dl~~~r~v~~~~~~~~a~~~~~~~~etSAk~~ 147 (161)
T cd04117 70 YRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTN 147 (161)
T ss_pred HHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCC--CCCEEEEEEECCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 7641688996148988999999999999998789--98649998732787862779999999999986997999677898
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 89999999999999
Q gi|254780648|r 313 HGIPQILECLHDKI 326 (335)
Q Consensus 313 ~GI~eL~~~I~e~L 326 (335)
+||+++...|.+++
T Consensus 148 ~nV~e~F~~l~~~i 161 (161)
T cd04117 148 SNIKESFTRLTELV 161 (161)
T ss_pred CCHHHHHHHHHHHC
T ss_conf 29899999999649
No 106
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.64 E-value=5e-16 Score=116.99 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=110.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-CEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001-02663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-LGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
|.+||-+++|||||++++...+- ..+|+-|+-... .-.+..++ ..+.++|+||--+ -..+... ++..++
T Consensus 3 i~vvG~~~vGKTsli~r~~~~~f-~~~~~~ti~~~~~~k~i~~~~~~~~l~iwDt~G~~~----~~~~~~~---~~~~a~ 74 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENKF-NEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER----YHALGPI---YYRDAD 74 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC----CCCCCHH---HEECCC
T ss_conf 99999999679999999983989-987677526479999999999999999995899730----3556313---301144
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 887520222211013466678998777667505988999974658998899-9999999986299489998887889999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
++++|.|+++++..+..+.+.+++..+.. .+-|.++|.||+|+.++... .+..+++.+..+.+.|.+||++|.||++
T Consensus 75 ~~ilv~d~t~~~Sf~~i~~~~~~i~~~~~--~~~~iilvgnK~Dl~~~r~v~~~e~~~~a~~~~~~y~e~Sak~g~nV~e 152 (162)
T cd04123 75 GAILVYDITDADSFQKVKKWIKELKQMRG--NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEE 152 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCCEEEECCCCCCHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf 57999638998999999999999998769--9974686633213254088899999999998299899981278819899
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780648|r 318 ILECLHDKI 326 (335)
Q Consensus 318 L~~~I~e~L 326 (335)
+.+.|.+.+
T Consensus 153 ~F~~l~~~i 161 (162)
T cd04123 153 LFLSLAKRM 161 (162)
T ss_pred HHHHHHHHH
T ss_conf 999999986
No 107
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.64 E-value=9.1e-16 Score=115.42 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=110.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------663298--6899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|.+||-++||||||++++....- ..+| .|++| .+..++ ..+.++|++|-- +-..+-.. +
T Consensus 5 iv~vGd~~vGKTsli~r~~~~~f-~~~y-----~~Tig~~~~~~~i~~~~~~~~l~iwDtaG~e----~~~~~~~~---~ 71 (166)
T cd01869 5 LLLIGDSGVGKSCLLLRFADDTY-TESY-----ISTIGVDFKIRTIELDGKTIKLQIWDTAGQE----RFRTITSS---Y 71 (166)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCC----CCCCCHHH---H
T ss_conf 99999999789999999943999-9874-----7854404899999999999999999899982----34626788---8
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 33357887520222211013466678998777667505988999974658998899-99999999862994899988878
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITG 312 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg 312 (335)
...+++++.|.|+++++..+.++.+.+++..+.. .+.|.++|.||+||.+.... .+..+++.+..+.+.+.+||+++
T Consensus 72 ~~~a~~~ilvfdit~~~Sf~~i~~w~~~i~~~~~--~~~~~ilvgNK~DL~~~r~v~~~~~~~~a~~~~~~~~E~SAk~g 149 (166)
T cd01869 72 YRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNA 149 (166)
T ss_pred HHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 5632677997117998999999999999998678--77744886132011314667999999999983996999876878
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8999999999999985
Q gi|254780648|r 313 HGIPQILECLHDKIFS 328 (335)
Q Consensus 313 ~GI~eL~~~I~e~L~~ 328 (335)
+||+++.+.|.+.+.+
T Consensus 150 ~nI~e~F~~l~~~i~k 165 (166)
T cd01869 150 TNVEQAFMTMAREIKK 165 (166)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 0689999999999971
No 108
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.64 E-value=8.6e-16 Score=115.57 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=113.3
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 11244216777530354101454012121100000010--2663298--6899822642124731167751234433333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTER 236 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer 236 (335)
-|-|||-++||||||+.+.+... -...|..|+- ... -.+..++ .++.|+||+|-- .-..+... ++..
T Consensus 8 KivllGd~~VGKTsl~~r~~~~~-f~~~y~~Tig-~~~~~k~~~~~~~~v~l~iwDtaGqe----~f~~l~~~---y~r~ 78 (189)
T cd04121 8 KFLLVGDSDVGKGEILASLQDGS-TESPYGYNMG-IDYKTTTILLDGRRVKLQLWDTSGQG----RFCTIFRS---YSRG 78 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCC-EEEEEEEEEECCEEEEEEEECCCCCC----CHHHHHHH---HHHH
T ss_conf 99999989978999999997499-7898687653-79899999999999999998178862----21167898---8663
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf 5788752022221101346667899877766750598899997465899889-999999999862994899988878899
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSITGHGI 315 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~tg~GI 315 (335)
++.++.|.|+++++..+.++.+.+|+..+.+ .-|.++|.||+||.+... ..+..+++.+..+.+.|.+||+++.||
T Consensus 79 a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~---~~p~iLVGNK~DL~~~r~V~~ee~~~~A~~~~~~f~EtSAk~g~nV 155 (189)
T cd04121 79 AQGIILVYDITNRWSFDGIDRWIKEIDEHAP---GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNI 155 (189)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 3704898227988999999999999999768---9878996132550330889999999999988999999600679398
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999985452
Q gi|254780648|r 316 PQILECLHDKIFSIRG 331 (335)
Q Consensus 316 ~eL~~~I~e~L~~~r~ 331 (335)
+++.+.|.+.+...+.
T Consensus 156 ~e~F~~l~~~il~~~~ 171 (189)
T cd04121 156 TESFTELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999998658
No 109
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.64 E-value=1.7e-15 Score=113.84 Aligned_cols=155 Identities=15% Similarity=0.223 Sum_probs=109.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECCE--EEEEECCCCCCCCCCCCCCCHHHH--H--HH
Q ss_conf 1244216777530354101454012121100000010--26632986--899822642124731167751234--4--33
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGYK--EFILADIPGIIKNAHQGAGIGDRF--L--KH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~~--~~~i~D~PGlIegA~~~~glG~~F--L--rh 233 (335)
|.|||-++||||||+++.....= ..+|. .|..... -.+..++. .+.++||+|- .+| + .+
T Consensus 3 ivlvGd~~VGKTsLi~rf~~~~F-~~~y~-~Tig~d~~~k~i~v~~~~v~l~iwDtaGq-----------e~f~~~~~~y 69 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVEGEF-DEDYI-QTLGVNFMEKTISIRGTEITFSIWDLGGQ-----------REFINMLPLV 69 (182)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCCC-CCCEEEEEEEEEEECCEEEEEEEEECCCC-----------HHHHHHHHHH
T ss_conf 99999999898999999953999-99988-87338989999999999999999867764-----------8789999998
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH------HHHHHHHHHHHHHCCCCEEEE
Q ss_conf 33357887520222211013466678998777667505988999974658998------899999999998629948999
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS------DTLARKKNELATQCGQVPFEF 307 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~------e~~~~~~~~l~~~~~~~vi~I 307 (335)
...++++++|.|.++++..+.+..+.++++.+++ ..+.++|.||+||... +...+...++.+..+.+.|.+
T Consensus 70 ~~~a~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~---~~~~ilVGnK~DL~~~~~~~~~~~~~~~~~~~a~~~~~~f~et 146 (182)
T cd04128 70 CNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK---TAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFC 146 (182)
T ss_pred HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCCCCHHEEHHHHHHHHHHHHCCCEEEEE
T ss_conf 6478789999978998999989999999997689---9988999986635565562231024899999999849989999
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8887889999999999999854523
Q gi|254780648|r 308 SSITGHGIPQILECLHDKIFSIRGE 332 (335)
Q Consensus 308 SA~tg~GI~eL~~~I~e~L~~~r~e 332 (335)
||++++||+++.+.|.+.+.+.+..
T Consensus 147 SAk~~~nV~e~F~~i~~~i~~~~~~ 171 (182)
T cd04128 147 STSHSINVQKIFKIVLAKAFDLPLT 171 (182)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 4799979899999999999668997
No 110
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.63 E-value=6.4e-16 Score=116.34 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=112.2
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE-----EEECC--EEEEEECCCCCCCCCCCCCCCHHHHHH--
Q ss_conf 124421677753035410145401212110000001026-----63298--689982264212473116775123443--
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI-----VKEGY--KEFILADIPGIIKNAHQGAGIGDRFLK-- 232 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv-----v~~~~--~~~~i~D~PGlIegA~~~~glG~~FLr-- 232 (335)
|.+||-+.||||||+.+....+- ..+| .|++|. +..++ ..+.|+|++|--+ .+-|+
T Consensus 2 ivviGd~gVGKTsli~r~~~~~F-~~~y-----~pTi~~~~~k~~~~~~~~~~l~iwDtaG~e~---------~~~l~~~ 66 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHF-VETY-----DPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE---------YTALRDQ 66 (190)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCC-----CCCCCEEEEEEEEECCEEEEEEEEECCCCCC---------HHHHHHH
T ss_conf 89999899878999999962979-9886-----9972478899999999999999998999731---------1678899
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECC
Q ss_conf 3333578875202222110134666789987776675-05988999974658998899-999999998629948999888
Q gi|254780648|r 233 HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSEL-RKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSI 310 (335)
Q Consensus 233 hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L-~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~ 310 (335)
++..+++++.|.|+++++..+.++.+.+++..+.... .+-|.++|.||+|+.+.... .+..+.+.+..+...|.+||+
T Consensus 67 ~~r~a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl~~~r~V~~~e~~~~a~~~~~~~~E~SAk 146 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAK 146 (190)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHCCCEEEEECCC
T ss_conf 82367658999727977899999999999999853379995289514553503305789999999999809989997358
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7889999999999999854523
Q gi|254780648|r 311 TGHGIPQILECLHDKIFSIRGE 332 (335)
Q Consensus 311 tg~GI~eL~~~I~e~L~~~r~e 332 (335)
+++||+++.+.|.+.+.+.+..
T Consensus 147 ~~~nV~e~F~~l~~~i~~~~~~ 168 (190)
T cd04144 147 TNVNVERAFYTLVRALRQQRQG 168 (190)
T ss_pred CCCCHHHHHHHHHHHHHHHHHC
T ss_conf 8809799999999999987743
No 111
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.63 E-value=1e-15 Score=115.11 Aligned_cols=157 Identities=17% Similarity=0.122 Sum_probs=105.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-CEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001-02663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-LGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
|.+||-++||||||++++...+- ..+|. +|+... .-.+..++ ..+.++||+|-=+ -..+-.. ++..++
T Consensus 3 vvlvGd~~VGKTsli~r~~~~~F-~~~y~-pTi~~~~~~~~~~~~~~v~l~iwDtaG~e~----~~~l~~~---~~~~a~ 73 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYDEF-VEDYE-PTKADSYRKKVVLDGEDVQLNILDTAGQED----YAAIRDN---YHRSGE 73 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCCEEEEEEEECCEEEEEEEEECCCCHH----HHHHHHH---HHHHCC
T ss_conf 99999999889999999971989-87748-854416899999999999999998988662----4889999---886376
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 887520222211013466678998777667505988999974658998899-9999999986299489998887889999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
+++.|.|+++++..+.+..+.+++..+... ..-|.++|.||+||.+.... .+..+++.+..+.+.+.+||++++||++
T Consensus 74 ~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~-~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~E~SAk~g~nV~~ 152 (164)
T cd04139 74 GFLLVFSITDMESFTATAEFREQILRVKDD-DNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEK 152 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 889999779778899999999999986087-8863698733032334177899999999998399899982687908899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999985
Q gi|254780648|r 318 ILECLHDKIFS 328 (335)
Q Consensus 318 L~~~I~e~L~~ 328 (335)
+...|.+.+.+
T Consensus 153 ~F~~l~~~i~~ 163 (164)
T cd04139 153 AFYDLVREIRQ 163 (164)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999972
No 112
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.63 E-value=9.7e-16 Score=115.23 Aligned_cols=158 Identities=14% Similarity=0.092 Sum_probs=106.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001026632986--899822642124731167751234433333578
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
|.+||-|+||||||+++.....- ..+|.-|.-.-..-.+..++. .+.++|++|--+ -..+-.. ++..+++
T Consensus 3 iv~vGd~~vGKTsli~r~~~~~f-~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDt~G~e~----~~~~~~~---~~~~a~~ 74 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQGHF-VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE----FSAMRDQ---YMRTGEG 74 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC----HHHHHHH---HCCCCCE
T ss_conf 99999999789999999972979-98778813678999999999999999998999710----3567777---5379877
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 87520222211013466678998777667505988999974658998899-99999999862994899988878899999
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
++.|.|+++++..+.+..+.+++.... ...+-|.++|.||+||.+.... .+..+.+.+..+.+.+.+||++++||+++
T Consensus 75 ~ilvydi~~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgnK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~g~nV~~~ 153 (164)
T smart00173 75 FLLVYSITDRQSFEEIKKFREQILRVK-DRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEA 153 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 999830798899999999999999861-8888866877753463011789999999999983998999858988178999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999985
Q gi|254780648|r 319 LECLHDKIFS 328 (335)
Q Consensus 319 ~~~I~e~L~~ 328 (335)
.+.|.+.+.+
T Consensus 154 F~~l~~~i~k 163 (164)
T smart00173 154 FYDLVREIRK 163 (164)
T ss_pred HHHHHHHHHC
T ss_conf 9999999960
No 113
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.63 E-value=2.3e-15 Score=112.97 Aligned_cols=149 Identities=23% Similarity=0.267 Sum_probs=92.8
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHH-H------HHHCCCEE--------------CCEEEEECCEEEEEECCCCCCCC
Q ss_conf 112442167775303541014540121-2------11000000--------------10266329868998226421247
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIA-D------YPFTTLYP--------------NLGIVKEGYKEFILADIPGIIKN 219 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa-~------ypFTT~~P--------------~lGvv~~~~~~~~i~D~PGlIeg 219 (335)
.|+++|--.+|||||..+|+......+ | .-..|.+. ..........++.|+|+||=
T Consensus 2 NV~iiGHVDhGKTTL~~~L~~~~~~~~~D~~~eE~eRGITi~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH--- 78 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGH--- 78 (192)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCHHHHCCHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCC---
T ss_conf 89999761789999999998333501221358899779716710013785144221123234677458999877983---
Q ss_pred CCCCCCCHHHHHHHHH----HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH--
Q ss_conf 3116775123443333----3578875202222110134666789987776675059889999746589988999999--
Q gi|254780648|r 220 AHQGAGIGDRFLKHTE----RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKK-- 293 (335)
Q Consensus 220 A~~~~glG~~FLrhIe----r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~-- 293 (335)
.+|.+... .++..+.|||+.+- +..+-+.. +.. ..+...|.++|+||||+++.++..+.+
T Consensus 79 --------~df~~~~~~g~~~~D~ailvVda~~G-~~~QT~eh---~~~--~~~~~~~~iv~iNK~D~v~~~~~~~~~~~ 144 (192)
T cd01889 79 --------ASLIRTIIGGAQIIDLMLLVVDATKG-IQTQTAEC---LVI--GEILCKKLIVVLNKIDLIPEEERERKIEK 144 (192)
T ss_pred --------HHHHHHHHHHHHHCCCCEEEEECCCC-CCHHHHHH---HHH--HHHCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf --------88998888887432652799987888-87899999---999--99858997999974127881577999999
Q ss_pred --HHHHHH------CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf --999986------299489998887889999999999999
Q gi|254780648|r 294 --NELATQ------CGQVPFEFSSITGHGIPQILECLHDKI 326 (335)
Q Consensus 294 --~~l~~~------~~~~vi~ISA~tg~GI~eL~~~I~e~L 326 (335)
+++.+. .+.+++||||++|+|+++|.+.|.+.+
T Consensus 145 i~~~l~~~l~~~~~~~~~iipiSA~~G~gi~eL~~~i~~li 185 (192)
T cd01889 145 MKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99999999865389998499957898849899998887618
No 114
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.63 E-value=9e-16 Score=115.45 Aligned_cols=151 Identities=18% Similarity=0.168 Sum_probs=106.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------6632986--899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|.+||-++||||||+++++..+- ..+| .|.+| .+..++. ++.++|+||-= +-+.+-. .+
T Consensus 6 iv~iGd~~VGKTsli~r~~~~~f-~~~~-----~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e----~~~~~~~---~~ 72 (165)
T cd01868 6 IVLIGDSGVGKSNLLSRFTRNEF-NLDS-----KSTIGVEFATRSIQIDGKTIKAQIWDTAGQE----RYRAITS---AY 72 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCH----HHHHHHH---HH
T ss_conf 99999999789999999972989-9988-----9874478789999999999999999899972----1267899---87
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 3335788752022221101346667899877766750598899997465899889-999999999862994899988878
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSITG 312 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~tg 312 (335)
...+++++.|.|+++++..+.+..+.+++..+.+ .+.|.++|.||+||.+... ..+..+++.+..+.+.+.+||++|
T Consensus 73 ~~~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~--~~~~iilVgnK~DL~~~r~Vs~~e~~~~a~~~~~~~~E~SAk~g 150 (165)
T cd01868 73 YRGAVGALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDG 150 (165)
T ss_pred HHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 3320514898626988999999999999998555--77359870234786885788899999999985997999678889
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 899999999999998
Q gi|254780648|r 313 HGIPQILECLHDKIF 327 (335)
Q Consensus 313 ~GI~eL~~~I~e~L~ 327 (335)
+||+++.+.|.+.|.
T Consensus 151 ~nV~e~F~~l~~~i~ 165 (165)
T cd01868 151 TNVEEAFKQLLTEIY 165 (165)
T ss_pred CCHHHHHHHHHHHHC
T ss_conf 298999999999869
No 115
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.63 E-value=9.4e-16 Score=115.32 Aligned_cols=159 Identities=14% Similarity=0.166 Sum_probs=108.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298--6899822642124731167751234433333578
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
|.+||-++||||||+++..... =+.+|.=|+-.-..-.+..++ ..+.|+||+|--+-.+ .....++..+++
T Consensus 2 iv~vGd~~VGKTsli~rf~~~~-f~~~y~~T~~~~~~~~~~v~~~~~~l~iwDtaG~e~~~~------~~~~~~~~~a~~ 74 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKR-FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT------EQLERSIRWADG 74 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCC-CCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCH------HHHHHHCCCCCE
T ss_conf 9999989977899999997498-998759955630579999999999999992898501220------125543045878
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCC-CCHHH
Q ss_conf 87520222211013466678998777667505988999974658998899-99999999862994899988878-89999
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITG-HGIPQ 317 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg-~GI~e 317 (335)
++.|.|+++++..+.++.+.+++..+...-.+.|.++|.||+||.+.... .+..+++.+..+.+.|.+||+++ +||++
T Consensus 75 ~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r~Vs~ee~~~~a~~~~~~f~E~SAk~~~~~V~~ 154 (165)
T cd04146 75 FVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHS 154 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHH
T ss_conf 99998658889999999999999998466999539984455452103677999999999981998999752087826999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q gi|254780648|r 318 ILECLHDKIF 327 (335)
Q Consensus 318 L~~~I~e~L~ 327 (335)
+.+.|.+.+.
T Consensus 155 ~F~~l~~~i~ 164 (165)
T cd04146 155 VFHELCREVR 164 (165)
T ss_pred HHHHHHHHHC
T ss_conf 9999999966
No 116
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.63 E-value=3.2e-16 Score=118.15 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=108.8
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC--CEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001--02663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN--LGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~--lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|.+||-++||||||++++...+- ..+|+-| .... .-.+..++ .++.++||+|- | .-..+-.. +...+
T Consensus 5 ivlvGd~~VGKTsli~r~~~~~f-~~~~~~T-ig~~~~~k~i~~~~~~~~l~iwDtaG~-e---~~~~~~~~---~~~~a 75 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEKKF-MADCPHT-IGVEFGTRIIEVNGQKIKLQIWDTAGQ-E---RFRAVTRS---YYRGA 75 (166)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCCCCC-CCEEEEEEEEEECCEEEEEEEEECCCC-C---CCCCCCHH---HEECC
T ss_conf 99999999579999999912988-9999997-446889999999999999999989998-5---44425211---14315
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 7887520222211013466678998777667505988999974658998899-999999998629948999888788999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
++++.|.|+++++..+.+..+.+++..+.. .+.|.++|.||+||.+.... .+..+++.+..+.+.|.+||++++||+
T Consensus 76 ~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~--~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~g~nV~ 153 (166)
T cd04122 76 AGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVE 153 (166)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHCC--CCCEEEECCCCCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 465997258747679999999999998569--997587034015744438999999999999869989998658780889
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999985
Q gi|254780648|r 317 QILECLHDKIFS 328 (335)
Q Consensus 317 eL~~~I~e~L~~ 328 (335)
++...|.+.+.+
T Consensus 154 e~F~~l~~~i~~ 165 (166)
T cd04122 154 DAFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999974
No 117
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.62 E-value=4.1e-16 Score=117.51 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=104.0
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------663298--6899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|.++|-++||||||++++...+- ...| .|++| .+..++ ..+.++|++|-= .-..+-. .+
T Consensus 3 ivl~Gd~~vGKTsli~r~~~~~f-~~~~-----~~Tig~~~~~k~~~~~~~~~~l~iwDtaG~e----~~~~~~~---~~ 69 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENKF-KEDS-----QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE----RFRSVTR---SY 69 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCH----HHHHHHH---HH
T ss_conf 99999499679999999972989-9987-----9976457899999999999999999899970----1226789---98
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 33357887520222211013466678998777667505988999974658998899-99999999862994899988878
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITG 312 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg 312 (335)
+..+++++.|.|+++++..+.+..+.+++..+.. .+-|.++|.||+||.+.... .+..+++.+..+.+.|.+||+++
T Consensus 70 ~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~--~~~~iilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~ 147 (161)
T cd04113 70 YRGAAGALLVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTG 147 (161)
T ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 4057778995368988999999999999998679--99649860343440003788999999999985997999741569
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 89999999999999
Q gi|254780648|r 313 HGIPQILECLHDKI 326 (335)
Q Consensus 313 ~GI~eL~~~I~e~L 326 (335)
+||+++...+.+.+
T Consensus 148 ~nV~e~F~~la~~i 161 (161)
T cd04113 148 ENVEEAFLKCARSI 161 (161)
T ss_pred CCHHHHHHHHHHHC
T ss_conf 05899999999709
No 118
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=1.6e-15 Score=113.97 Aligned_cols=159 Identities=14% Similarity=0.102 Sum_probs=106.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEEC-C--EEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 12442167775303541014540121211000000102------66329-8--689982264212473116775123443
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEG-Y--KEFILADIPGIIKNAHQGAGIGDRFLK 232 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~-~--~~~~i~D~PGlIegA~~~~glG~~FLr 232 (335)
|.|||-+.||||||+++.....- ..+| .|++| .+..+ + ..+.|+||+|-=. -..|-..
T Consensus 3 vvllGd~gVGKTsLi~rf~~~~F-~~~y-----~~Tig~df~~k~i~~~~~~~v~l~iwDtaGqe~----~~~l~~~--- 69 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHGIF-SQHY-----KATIGVDFALKVIEWDPNTVVRLQLWDIAGQER----FGGMTRV--- 69 (201)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCC-----CCCCCEEEEEEEEEECCCEEEEEEEEECCCCCC----CCCCHHH---
T ss_conf 99999999789999999982999-9988-----887567789989996798199999986899832----2200375---
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCC-CEEEEE
Q ss_conf 333357887520222211013466678998777--667505988999974658998899-9999999986299-489998
Q gi|254780648|r 233 HTERTHVLLHIVSALEENVQAAYQCILDELSAY--NSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQ-VPFEFS 308 (335)
Q Consensus 233 hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y--~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~-~vi~IS 308 (335)
++..+++++.|.|+++++..+.+..+.++|... ...-..-|.++|.||+||.+.... .+...++.+..+. ..|.+|
T Consensus 70 y~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~~ipiilVgNK~DL~~~~~v~~ee~~~~a~~~~~~~~~EtS 149 (201)
T cd04107 70 YYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETS 149 (201)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 55577647999827988999989999999999862137898718998665564112568999999999977998099977
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 8878899999999999998545230
Q gi|254780648|r 309 SITGHGIPQILECLHDKIFSIRGEN 333 (335)
Q Consensus 309 A~tg~GI~eL~~~I~e~L~~~r~e~ 333 (335)
|++++||+++.+.|.+.+.+.+.+.
T Consensus 150 Aktg~nV~e~F~~l~~~i~~~~~~~ 174 (201)
T cd04107 150 AKEGINIEEAMRFLVKNILANDKNL 174 (201)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9999498999999999998665333
No 119
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.62 E-value=1.2e-15 Score=114.75 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=106.8
Q ss_pred EEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECC--EEEEE-CC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 1244216777530354101454-012121100000010--26632-98--689982264212473116775123443333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNL--GIVKE-GY--KEFILADIPGIIKNAHQGAGIGDRFLKHTE 235 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~l--Gvv~~-~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIe 235 (335)
|.++|-++||||||++++.... .-..+|. .|..... -.+.. ++ ..+.++||+|-= +-..+- -.++.
T Consensus 3 ivllGd~gVGKTsli~r~~~~~~~f~~~y~-~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~e----~~~~l~---~~~~~ 74 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFPKNYL-MTTGCDFVVKEVPVDTDNTVELFIFDSAGQE----LYSDMV---SNYWE 74 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCC-CCCCEEEEEEEEEECCCCEEEEEEEECCCCC----CHHHHH---HHHHH
T ss_conf 999995995889999999978886688888-8645788999999789979999999799984----006789---99976
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 357887520222211013466678998777667505988999974658998899-9999999986299489998887889
Q gi|254780648|r 236 RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHG 314 (335)
Q Consensus 236 r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~G 314 (335)
.+++++.|.|+++++..+....+.++++... .+.|.++|.||+||.+..+. .+..+++.+..+.+.|.+||++++|
T Consensus 75 ~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~---~~~p~ilVgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~g~n 151 (164)
T cd04101 75 SPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVG 151 (164)
T ss_pred HCCEEEEEEECCCHHHHHHHHHHHHHHHHHC---CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 4268999970774668999999999999766---8986899987224452455699999999998899899986688909
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780648|r 315 IPQILECLHDKI 326 (335)
Q Consensus 315 I~eL~~~I~e~L 326 (335)
|+++.+.|.+.+
T Consensus 152 V~e~F~~lar~~ 163 (164)
T cd04101 152 YEEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999986
No 120
>KOG0073 consensus
Probab=99.62 E-value=4e-15 Score=111.49 Aligned_cols=152 Identities=22% Similarity=0.260 Sum_probs=117.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHH-HHH
Q ss_conf 12442167775303541014540121211000000102----6632986899822642124731167751234433-333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKH-TER 236 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrh-Ier 236 (335)
|-++|+-||||+|+++++.+..+ -|.+|.+| .+.++..++.+.|+-|=.+ ...|.+| -|.
T Consensus 19 iLiLGLdNsGKTti~~kl~~~~~-------~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~--------lr~~W~nYfes 83 (185)
T KOG0073 19 ILILGLDNSGKTTIVKKLLGEDT-------DTISPTLGFQIKTLEYKGYTLNIWDVGGQKT--------LRSYWKNYFES 83 (185)
T ss_pred EEEEECCCCCCHHHHHHHCCCCC-------CCCCCCCCEEEEEEEECCEEEEEEECCCCCH--------HHHHHHHHHHC
T ss_conf 99991278982448988538982-------2328721135578774242899997488533--------68788776650
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC---HHHHHH--HHHHHHHHCCCCEEEEECCC
Q ss_conf 5788752022221101346667899877766750598899997465899---889999--99999986299489998887
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVD---SDTLAR--KKNELATQCGQVPFEFSSIT 311 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~---~e~~~~--~~~~l~~~~~~~vi~ISA~t 311 (335)
++.++||+|.+++...++......+|-. ++.++.+|.+|++||.|+.. .+++.. .+.++.+...|+++.+||.+
T Consensus 84 tdglIwvvDssD~~r~~e~~~~L~~lL~-eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~t 162 (185)
T KOG0073 84 TDGLIWVVDSSDRMRMQECKQELTELLV-EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVT 162 (185)
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHH-HHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCCCEEEEEECCC
T ss_conf 4728999977208889999999999975-654348843999734768552478788876477876133672289985454
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 889999999999999854
Q gi|254780648|r 312 GHGIPQILECLHDKIFSI 329 (335)
Q Consensus 312 g~GI~eL~~~I~e~L~~~ 329 (335)
|+++.+-++++...+.+.
T Consensus 163 ge~l~~gidWL~~~l~~r 180 (185)
T KOG0073 163 GEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 564788889999999987
No 121
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.62 E-value=6e-16 Score=116.49 Aligned_cols=150 Identities=16% Similarity=0.182 Sum_probs=105.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------6632986--899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|.+||-++||||||++++....- ..+ ..|++| .+..++. .+.++|++|-= +-..+-.. +
T Consensus 4 ivviGd~~vGKTsli~r~~~~~f-~~~-----~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e----~~~~~~~~---~ 70 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNEF-SEN-----QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE----RYRSLAPM---Y 70 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCC-----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCH----HHHHHHHH---H
T ss_conf 99999599689999999943989-998-----68866678899999999999999999799971----00278898---8
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 3335788752022221101346667899877766750598899997465899889-999999999862994899988878
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSITG 312 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~tg 312 (335)
+..+++++.|.|+++++..+.++.+.+++..+.. ...|.++|.||+||.+... ..+..+++.+..+.+.+.+||+++
T Consensus 71 ~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~--~~~~iilVgnK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~ 148 (163)
T cd01860 71 YRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTG 148 (163)
T ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCEEEEEEECCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 5167714999818997999999999999998559--87236775533575650899999999999982997999862659
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 89999999999999
Q gi|254780648|r 313 HGIPQILECLHDKI 326 (335)
Q Consensus 313 ~GI~eL~~~I~e~L 326 (335)
+||+++.+.|.+.|
T Consensus 149 ~nV~e~F~~l~~~i 162 (163)
T cd01860 149 ENVNELFTEIAKKL 162 (163)
T ss_pred CCHHHHHHHHHHHC
T ss_conf 07899999999858
No 122
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.62 E-value=5.3e-16 Score=116.84 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=106.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010-2663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
|.+||-++||||||+.++...+- ..+|. .|+.... -.+..++ ..+.++|++|--+ -..+-.. ++..++
T Consensus 4 vvlvGd~~VGKTsli~r~~~~~F-~~~y~-~Ti~~~~~k~~~i~~~~~~l~iwDtaG~e~----~~~l~~~---~~~~a~ 74 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNHF-VDEYD-PTIEDSYRKQVVIDGETCLLDILDTAGQEE----YSAMRDQ---YMRTGE 74 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCCEEEEEEEECCEEEEEEEEECCCCCC----CCHHHHH---HHCCCC
T ss_conf 99989999889999999983928-87568-855527999999999999999997998601----1147898---715787
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 88752022221101346667899877766750598899997465899889999999999862994899988878899999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
+++.|.|+++++..+....+.+++..+.. ..+-|.++|.||+|+.+.+-..+..+++.+..+.+.+.+||++++||+++
T Consensus 75 ~~ilvydvt~~~Sf~~v~~w~~~i~~~~~-~~~~piilVgNK~Dl~~r~V~~~e~~~~a~~~~~~f~E~SAk~~~nV~e~ 153 (162)
T cd04138 75 GFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEA 153 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEEEECCHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 79999617988999989999999998548-88854999976535645558899999999980998999738998598999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780648|r 319 LECLHDKI 326 (335)
Q Consensus 319 ~~~I~e~L 326 (335)
...|.+.+
T Consensus 154 F~~l~~~I 161 (162)
T cd04138 154 FYTLVREI 161 (162)
T ss_pred HHHHHHHC
T ss_conf 99999963
No 123
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.62 E-value=2.3e-15 Score=113.01 Aligned_cols=160 Identities=15% Similarity=0.170 Sum_probs=107.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010-2663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
|.+||-++||||||+++.....- ..+|. .|..... -.+..++ ..+.|+|++|--+ -..+... +...++
T Consensus 4 IvlvGd~~VGKTsli~r~~~~~f-~~~y~-~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~----~~~~~~~---~~~~a~ 74 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEGHF-VESYY-PTIENTFSKIIRYKGQDYHLEIVDTAGQDE----YSILPQK---YSIGIH 74 (180)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCCC-CCCCCCCCEEEEECCEEEEEEEEECCCCCC----CCHHHHH---HHHHCC
T ss_conf 99999899889999999970978-99858-812441137999999999999998998701----0066799---986355
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 887520222211013466678998777667505988999974658998899-9999999986299489998887889999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
.++.|.|+++++..+..+.+.+++..+.. -..-|.++|.||+||.+.... .+..+++.+..+.+.|.+||++++||++
T Consensus 75 ~~ilvydvt~~~Sf~~~~~~~~~~~~~~~-~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~~f~EtSAk~g~nV~e 153 (180)
T cd04137 75 GYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEE 153 (180)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 78999743887889999999999999758-88886797765346244078899999999998399899977688919899
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999985452
Q gi|254780648|r 318 ILECLHDKIFSIRG 331 (335)
Q Consensus 318 L~~~I~e~L~~~r~ 331 (335)
+.+.|.+.+.+...
T Consensus 154 ~F~~l~~~i~k~~~ 167 (180)
T cd04137 154 AFELLIEEIEKVEN 167 (180)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999988638
No 124
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.61 E-value=1.7e-15 Score=113.73 Aligned_cols=152 Identities=20% Similarity=0.189 Sum_probs=109.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------663298--6899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|.+||-++||||||+++.....-. .+| .|++| .+..++ ..+.++||+|-= .-..+-.. +
T Consensus 4 ivllGd~~VGKTsli~r~~~~~f~-~~y-----~~Tig~~~~~k~i~~~~~~i~l~iwDtaGqe----~~~~l~~~---y 70 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADDSFT-SAF-----VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE----RYRTITTA---Y 70 (165)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-CCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCC----CCCCCHHH---H
T ss_conf 999999996889999999249889-976-----8876378799999999999999999699983----45544154---4
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 3335788752022221101346667899877766750598899997465899889-999999999862994899988878
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSITG 312 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~tg 312 (335)
...+++++.|.|+++++..+.++.+.++++.+.. ...|.++|.||+||.+... ..+..+++.+..+.+.|.+||+++
T Consensus 71 ~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~--~~~~iilvgNK~DL~~~r~v~~~~~~~~a~~~~~~~~E~SAk~~ 148 (165)
T cd01865 71 YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKEN 148 (165)
T ss_pred HHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECCCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 1135448998517887999999999999998689--87259996024235551889999999999986997999768989
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8999999999999985
Q gi|254780648|r 313 HGIPQILECLHDKIFS 328 (335)
Q Consensus 313 ~GI~eL~~~I~e~L~~ 328 (335)
+||+++.+.|.+.+.+
T Consensus 149 ~nV~e~F~~l~~~i~~ 164 (165)
T cd01865 149 INVKQVFERLVDIICD 164 (165)
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 0889999999999962
No 125
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.61 E-value=2.3e-15 Score=112.94 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=106.9
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE------EEEC------------CEEEEEECCCCCCCCCCC
Q ss_conf 1124421677753035410145401212110000001026------6329------------868998226421247311
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI------VKEG------------YKEFILADIPGIIKNAHQ 222 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv------v~~~------------~~~~~i~D~PGlIegA~~ 222 (335)
-|.+||-++||||||+.+++..+-. .. -.|++|+ +..+ ...+.++|++|-= .
T Consensus 6 KivvvGd~~VGKTsli~r~~~~~f~-~~-----y~~Tig~~~~~k~i~~~~~~~~~~~~~~~~v~l~iwDtaGqe----~ 75 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYTDNKFN-PK-----FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE----R 75 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-CC-----CCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCH----H
T ss_conf 9999999998889999999619589-98-----688432268899999847655444578858999999898863----0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCC
Q ss_conf 677512344333335788752022221101346667899877766750598899997465899889-9999999998629
Q gi|254780648|r 223 GAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCG 301 (335)
Q Consensus 223 ~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~ 301 (335)
-..+-. .++..+++++.|.|+++++..+.+..+.+++..+.. ....|.++|.||+||.+... ..+..+++.+..+
T Consensus 76 ~~~l~~---~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~-~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~ 151 (180)
T cd04127 76 FRSLTT---AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEEQAKALADKYG 151 (180)
T ss_pred HHHHHH---HHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEECCCCCHHHCCCCCHHHHHHHHHHCC
T ss_conf 478889---998754365899968988999989999999998546-6898578750323667508889999999999849
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 948999888788999999999999985
Q gi|254780648|r 302 QVPFEFSSITGHGIPQILECLHDKIFS 328 (335)
Q Consensus 302 ~~vi~ISA~tg~GI~eL~~~I~e~L~~ 328 (335)
.+.|.+||++++||+++.+.|.+.+.+
T Consensus 152 ~~~~E~SAk~g~nV~e~F~~l~~~i~~ 178 (180)
T cd04127 152 IPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 979998037791989999999999997
No 126
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=2.8e-15 Score=112.40 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=112.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEEC-C--EEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 12442167775303541014540121211000000102------66329-8--689982264212473116775123443
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEG-Y--KEFILADIPGIIKNAHQGAGIGDRFLK 232 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~-~--~~~~i~D~PGlIegA~~~~glG~~FLr 232 (335)
|.+||-+.||||+|+.+.+.-+-. . ...|++| .++.. + .++.|+||+|- ..-+.+...|
T Consensus 5 ivllGd~~VGKTsL~~rf~~~~F~-~-----~~~~Tig~df~~k~i~i~dg~~v~l~IwDTaGq----e~~~si~~~y-- 72 (211)
T cd04111 5 LIVIGDSTVGKSSLLKRFTEGRFA-E-----VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ----ERFRSITRSY-- 72 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-C-----CCCCCCCEEEEEEEEEECCCCEEEEEEEECCCC----CCCCCCHHHH--
T ss_conf 999999996199999999819999-9-----868720168899899977995999999979886----3456442877--
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 33335788752022221101346667899877766750598899997465899889-99999999986299489998887
Q gi|254780648|r 233 HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSIT 311 (335)
Q Consensus 233 hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~t 311 (335)
...++.++.|.|+++++..+.+..+.+|+..+... ..-|.++|.||+||.+... ..+..+++.+..+.+.|.+||++
T Consensus 73 -yr~a~g~ilVyDvt~~~SF~~l~~W~~ei~~~~~~-~~~~iiLVGNK~DL~~~R~Vs~ee~~~~A~~~~~~f~EtSAK~ 150 (211)
T cd04111 73 -YRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSART 150 (211)
T ss_pred -HHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEECCCHHHHCCCCHHHHHHHHHHHCCEEEEECCCC
T ss_conf -42124468971477779999999999999997498-8853898874231285678899999999998399799975999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 88999999999999985452303
Q gi|254780648|r 312 GHGIPQILECLHDKIFSIRGENE 334 (335)
Q Consensus 312 g~GI~eL~~~I~e~L~~~r~e~E 334 (335)
++||+++.+.|.+.+.+.....|
T Consensus 151 g~nV~e~F~~la~~i~~~~~~~~ 173 (211)
T cd04111 151 GDNVEEAFELLTQEIYERIKRGE 173 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 81989999999999999987389
No 127
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.61 E-value=2.5e-15 Score=112.73 Aligned_cols=152 Identities=14% Similarity=0.127 Sum_probs=107.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------663298--6899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|.+||-++||||||+.+++...-. -+| .|++| .+..++ ..+.++||+|--+ -..+-.. .
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~f~-~~~-----~~Tig~~~~~~~~~~~~~~v~l~iwDtaGqe~----~~~l~~~---y 69 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTGEFE-KKY-----VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK----FGGLRDG---Y 69 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-CCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCHH----HHHHHHH---H
T ss_conf 999999998889999999839999-986-----87325567999999999799999997578715----6668788---7
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 33357887520222211013466678998777667505988999974658998899999999998629948999888788
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGH 313 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~ 313 (335)
...+++++.|.|+++++..+....+.+|+..+.+ +.|.++|.||+|+.+... .+...++.+..+.+.|.+||++++
T Consensus 70 ~~~a~~~ilvyDvt~~~Sf~~v~~w~~~i~~~~~---~~piilVgNK~Dl~~~~~-~~~~~~~~~~~~~~~~EtSAk~~~ 145 (166)
T cd00877 70 YIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRKV-KAKQITFHRKKNLQYYEISAKSNY 145 (166)
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCCC-CHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 4006579984378988899999999999998689---998999998621750366-799999999789989998458990
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998545
Q gi|254780648|r 314 GIPQILECLHDKIFSIR 330 (335)
Q Consensus 314 GI~eL~~~I~e~L~~~r 330 (335)
||+++...|.+.|.+..
T Consensus 146 nV~e~F~~la~~il~~~ 162 (166)
T cd00877 146 NFEKPFLWLARKLLGNP 162 (166)
T ss_pred CHHHHHHHHHHHHHCCC
T ss_conf 98999999999984289
No 128
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.61 E-value=1.4e-15 Score=114.29 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=106.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------663298--6899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|.+||-+.||||||+.+....+- ...| .|++| .+..++ ..+.++||+|--+ -..|... +
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~f-~~~y-----~~Tig~d~~~k~i~~~~~~~~l~iwDtaG~e~----~~~l~~~---~ 69 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNKKF-SNQY-----KATIGADFLTKEVTVDDKLVTLQIWDTAGQER----FQSLGVA---F 69 (172)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCHH----HHHHHHH---H
T ss_conf 99999899789999999952988-9875-----77555169999999999999999996999831----1068899---8
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH--HHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCC-CCEEEEEC
Q ss_conf 333578875202222110134666789987776--67505988999974658998899-999999998629-94899988
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYN--SELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCG-QVPFEFSS 309 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~--~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~-~~vi~ISA 309 (335)
...+++++.|.|+++++..+.+..+.+|+.... ......|.++|.||+|+.+.... .+..+++.+..+ .+.|.+||
T Consensus 70 ~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~~~~piilvgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~~E~SA 149 (172)
T cd01862 70 YRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSA 149 (172)
T ss_pred HHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 65275799993389989999999999999997276776576389996336836418999999999999769978999752
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 87889999999999999854523
Q gi|254780648|r 310 ITGHGIPQILECLHDKIFSIRGE 332 (335)
Q Consensus 310 ~tg~GI~eL~~~I~e~L~~~r~e 332 (335)
++++||+++.+.|.+.+.+.+++
T Consensus 150 k~~~nV~e~F~~l~~~~l~~~k~ 172 (172)
T cd01862 150 KEAINVEQAFETIARKALEQEKE 172 (172)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 67919899999999999986329
No 129
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.60 E-value=4.2e-15 Score=111.36 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=112.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE------EEEC---CEEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 124421677753035410145401212110000001026------6329---8689982264212473116775123443
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI------VKEG---YKEFILADIPGIIKNAHQGAGIGDRFLK 232 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv------v~~~---~~~~~i~D~PGlIegA~~~~glG~~FLr 232 (335)
|.|||-+.+|||||+.+.+...- ..+| .|++|+ +..+ ...+.|+|++|-- ....+-. .
T Consensus 3 vvllGd~~VGKTSli~rf~~~~F-~~~y-----~~TiG~d~~~k~i~i~~~~~v~l~iwDtaGqe----~~~~~~~---~ 69 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAKEGF-GKSY-----KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS----IGGKMLD---K 69 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCC-----CCCCCEEEEEEEEEECCCCEEEEEEEECCCCC----CHHHHHH---H
T ss_conf 99999999709999999974989-8877-----88655788999999879946999999699850----0237899---9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECC
Q ss_conf 33335788752022221101346667899877766750598-8999974658998899-999999998629948999888
Q gi|254780648|r 233 HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKI-EIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSI 310 (335)
Q Consensus 233 hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp-~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~ 310 (335)
++..++.+++|.|+++.+..+.++.+.+++..+...-..+| .++|.||+||.+.... .+..+++.+..+...|.+||+
T Consensus 70 y~~~a~~~ilVYDitn~~SF~~l~~W~~~i~~~~~~~~~~~~iiLVGNK~DL~~~R~Vs~ee~~~~A~~~g~~f~E~SAk 149 (215)
T cd04109 70 YIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAK 149 (215)
T ss_pred HHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf 99751513774147867899989999999999850457785299997545428647769999999999829989998389
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 78899999999999998545
Q gi|254780648|r 311 TGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 311 tg~GI~eL~~~I~e~L~~~r 330 (335)
+|+||+++...|...|...+
T Consensus 150 tg~nV~e~F~~la~~i~~~~ 169 (215)
T cd04109 150 TGDRVNLLFQQLAAELLGVD 169 (215)
T ss_pred CCCCHHHHHHHHHHHHHCCC
T ss_conf 99498999999999997683
No 130
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.60 E-value=1.8e-15 Score=113.66 Aligned_cols=152 Identities=13% Similarity=0.100 Sum_probs=103.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------663298--6899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|.+||-++||||||+++..+.+-. ..| .|.+| .+..++ ..+.++|+||-- +-..+-.. +
T Consensus 8 ivvlGd~~VGKTsli~r~~~~~f~-~~~-----~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e----~~~~l~~~---~ 74 (170)
T cd04116 8 VILLGDGGVGKSSLMNRYVTNKFD-TQL-----FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE----RFRSLRTP---F 74 (170)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-CCC-----CCCCEEEEEEEEEEECCEEEEEEEEECCCCC----CCCCCHHH---H
T ss_conf 999999997899999999739899-988-----8876079899999999999999999899972----43524176---6
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH--HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEECC
Q ss_conf 3335788752022221101346667899877766--7505988999974658998899999999998629-948999888
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNS--ELRKKIEIVGLSQIDTVDSDTLARKKNELATQCG-QVPFEFSSI 310 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~--~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~-~~vi~ISA~ 310 (335)
+..+++++.|.|+++++..+.+..+.+|+..|.. .-..-|.++|.||+||.+.+-..+..+++.+..+ .+.|.+||+
T Consensus 75 ~~~a~~~ilvydit~~~Sf~~~~~w~~~~~~~~~~~~~~~~piilvgnK~Dl~~r~v~~~e~~~~a~~~~~~~~~E~SAk 154 (170)
T cd04116 75 YRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAK 154 (170)
T ss_pred EECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 00477339999788879999999999999997144578884099996111130378899999999998599789998888
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 7889999999999999
Q gi|254780648|r 311 TGHGIPQILECLHDKI 326 (335)
Q Consensus 311 tg~GI~eL~~~I~e~L 326 (335)
+++||+++.+.+.+.+
T Consensus 155 ~g~nV~~~F~~l~~~i 170 (170)
T cd04116 155 DATNVAAAFEEAVRRV 170 (170)
T ss_pred CCCCHHHHHHHHHHCC
T ss_conf 8818899999999539
No 131
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.60 E-value=1.9e-15 Score=113.51 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=108.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE--EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102--663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG--IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG--vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|.++|-+.||||+|++.....+..-..|+ ||...... .+..++ ..+.++|++|- ++.. -..++ ...+
T Consensus 3 VvllGd~gVGKTSLi~rf~~~~f~~~~y~-~t~~~d~~~k~v~vd~~~~~l~i~Dt~g~-e~~~-----~~~~~--~~~a 73 (221)
T cd04148 3 VVMLGSPGVGKSSLASQFTSGEYDDHAYD-ASGDDDTYERTVSVDGEESTLVVIDHWEQ-EMWT-----EDSCM--QYQG 73 (221)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCC-CCCCEEEEEEEEEECCEEEEEEEEECCCC-HHHH-----HHHHH--HHCC
T ss_conf 99999899709999999981986986678-74424889999999999989999989873-1266-----66565--3068
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 788752022221101346667899877766750598899997465899889-9999999998629948999888788999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
++.+.|.|+++.+..+..+.+..+|..... ..+.|.|+|.||+||.+... ..+.-+++.+..+.+.|.+||+++.||+
T Consensus 74 da~ilVYdvtdr~SF~~~~~~~~~l~~~~~-~~~~piILVGNK~DL~~~R~Vs~eEg~~~A~~~~~~F~EtSAk~~~NV~ 152 (221)
T cd04148 74 DAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVD 152 (221)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCCHH
T ss_conf 689999964667788889999999998648-9995199985356668638999999999999859989994579994989
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999998
Q gi|254780648|r 317 QILECLHDKIF 327 (335)
Q Consensus 317 eL~~~I~e~L~ 327 (335)
++.+.|...+.
T Consensus 153 elF~~lvrqIr 163 (221)
T cd04148 153 ELLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 132
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.60 E-value=4.6e-15 Score=111.15 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=107.5
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE--EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102--663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG--IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG--vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|.+||-++||||||++++...+.. ..|. .|...... .+..++ ..+.++|++|.-+ -..+-.. ++..+
T Consensus 3 ivvvG~~~vGKTSLi~r~~~~~f~-~~y~-pTig~~~~~k~~~~~~~~~~l~iwDt~G~~~----~~~~~~~---~~~~a 73 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGRFV-SKYL-PTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE----YLEVRNE---FYKDT 73 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-CCCC-CCCCEEEEEEEEEECCEEEEEEEEECCCCHH----HHHHHHH---HHHHC
T ss_conf 999995995689999999639999-9858-9765577799999999999999998999764----7899999---98747
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 7887520222211013466678998777667---505988999974658998899-999999998629948999888788
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSE---LRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGH 313 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~---L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~ 313 (335)
+++++|.|+++++..+.+..+..++..+-.. ...-|.++|.||+|+...... .+..+.+.+..+.+.|.+||++++
T Consensus 74 d~~ilvydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~Sak~g~ 153 (168)
T cd04119 74 QGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGE 153 (168)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 78899950897444899999999999982453456686299985403444257889999999999869989998857790
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 99999999999998
Q gi|254780648|r 314 GIPQILECLHDKIF 327 (335)
Q Consensus 314 GI~eL~~~I~e~L~ 327 (335)
||+++.+.|.+.+.
T Consensus 154 ~V~e~F~~l~~~i~ 167 (168)
T cd04119 154 GVNEMFQTLFSSIV 167 (168)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 88999999999972
No 133
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.60 E-value=8.6e-16 Score=115.54 Aligned_cols=154 Identities=12% Similarity=0.108 Sum_probs=105.8
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010--2663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|.+||-++||||||+.+.....- ...|. +|..... -.+..++ ..+.++|++|--+ -..+-.. ++..+
T Consensus 6 iv~lGd~~vGKTsli~r~~~~~f-~~~~~-~Ti~~~~~~k~i~~~~~~~~l~iwDtaG~e~----~~~l~~~---~~~~a 76 (165)
T cd01864 6 IILIGDSNVGKTCVVQRFKSGTF-SERQG-NTIGVDFTMKTLEIEGKRVKLQIWDTAGQER----FRTITQS---YYRSA 76 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCEEEEEEEEEECCEEEEEEEEECCCCCC----CCCCCHH---HEECC
T ss_conf 99999999589999999964999-99879-9754378999999999999999998999834----4535075---52215
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCC-EEEEECCCCCCH
Q ss_conf 7887520222211013466678998777667505988999974658998899-99999999862994-899988878899
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQV-PFEFSSITGHGI 315 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~-vi~ISA~tg~GI 315 (335)
++++.|.|+++++..+.++.+.+++..+.. .+.|.++|.||+||.+.... .+..+++.+..+.. +|.+||++++||
T Consensus 77 ~~~ilvydit~~~Sf~~~~~w~~~i~~~~~--~~~~iilVGNK~DL~~~r~V~~~~~~~~a~~~~~~~~~E~SAk~~~nV 154 (165)
T cd01864 77 NGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNV 154 (165)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 666997138998999999999999998769--998438887723768628999999999999839976999788858198
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780648|r 316 PQILECLHDKI 326 (335)
Q Consensus 316 ~eL~~~I~e~L 326 (335)
+++.+.|.+.|
T Consensus 155 ~e~F~~la~~i 165 (165)
T cd01864 155 EEAFLLMATEL 165 (165)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999849
No 134
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.60 E-value=3.5e-15 Score=111.86 Aligned_cols=156 Identities=13% Similarity=0.092 Sum_probs=108.5
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010--2663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|-+||-++||||||+.++...+-. ..|+- |..... -.+..++ .++.++|++|--+ =..+-.. +...+
T Consensus 7 ivlvGd~~VGKTsli~r~~~~~f~-~~~~~-Tig~~~~~k~i~~~~~~~~l~iwDt~G~e~----~~~l~~~---~~~~a 77 (168)
T cd01866 7 YIIIGDTGVGKSCLLLQFTDKRFQ-PVHDL-TIGVEFGARMITIDGKQIKLQIWDTAGQES----FRSITRS---YYRGA 77 (168)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-CCCCC-CCEEEEEEEEEEECCEEEEEEEEECCCCCC----CCCCHHH---HHHHH
T ss_conf 999998997889999999109899-98789-850788999999999999999997999733----4625588---86643
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 7887520222211013466678998777667505988999974658998899-999999998629948999888788999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
++++.|.|+++++..+.+..+.+++..+.. .+.|.++|.||+||.+.... .+..+++.+..+.+.+.+||++++||+
T Consensus 78 ~~~ilvydit~~~Sf~~l~~w~~~i~~~~~--~~~~iiLVGNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~nV~ 155 (168)
T cd01866 78 AGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVE 155 (168)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCC--CCCEEEEEEECCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 689993445877999999999999998679--996599843423545407789999999999869999997678880889
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999985
Q gi|254780648|r 317 QILECLHDKIFS 328 (335)
Q Consensus 317 eL~~~I~e~L~~ 328 (335)
++...|.+.+.+
T Consensus 156 ~~F~~l~~~i~~ 167 (168)
T cd01866 156 EAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999973
No 135
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.59 E-value=8.8e-15 Score=109.44 Aligned_cols=152 Identities=21% Similarity=0.228 Sum_probs=92.1
Q ss_pred CEEEEECCCCCCCEEEEEECCCCC-------------HHH--H--------------HHHCCCEECCEEE-------EEC
Q ss_conf 112442167775303541014540-------------121--2--------------1100000010266-------329
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKP-------------KIA--D--------------YPFTTLYPNLGIV-------KEG 204 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~-------------kIa--~--------------ypFTT~~P~lGvv-------~~~ 204 (335)
.|+++|-=.+|||||+.+||.... +++ + |.++......... ...
T Consensus 2 Ni~iiGHVDhGKSTLi~~L~g~~~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCC
T ss_conf 69999885787999999970851244078886776031114566665111212231011110124421453145654311
Q ss_pred CEEEEEECCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 868998226421247311677512344333----3357887520222211013466678998777667505988999974
Q gi|254780648|r 205 YKEFILADIPGIIKNAHQGAGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQ 280 (335)
Q Consensus 205 ~~~~~i~D~PGlIegA~~~~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNK 280 (335)
.++|+|+|+|| | .+|.+.. ..+++.+.|||+.+.-+.. ++..+ +.. -..+.-+..|+++||
T Consensus 82 ~r~~tiiD~PG-----H------~df~~nmi~Gas~aD~aiLvVdA~eG~~~~--QT~eH-~~l-~~~lgv~~iIV~vNK 146 (203)
T cd01888 82 VRHVSFVDCPG-----H------EILMATMLSGAAVMDGALLLIAANEPCPQP--QTSEH-LAA-LEIMGLKHIIIVQNK 146 (203)
T ss_pred EEEEEEEECCC-----H------HHHHHHHHHHHHHCCEEEEEEECCCCCCHH--HHHHH-HHH-HHHCCCCCEEEEEEC
T ss_conf 24799986898-----7------999999997664347668986436677507--79999-999-998499863677507
Q ss_pred CCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 65899889999999999862------994899988878899999999999998
Q gi|254780648|r 281 IDTVDSDTLARKKNELATQC------GQVPFEFSSITGHGIPQILECLHDKIF 327 (335)
Q Consensus 281 iDl~~~e~~~~~~~~l~~~~------~~~vi~ISA~tg~GI~eL~~~I~e~L~ 327 (335)
||+++.+...+.++++.+.. +.+++||||++|+||++|++.|.+.+.
T Consensus 147 mDlv~~~~~~~~~~ei~~~l~~~~~~~~~iIPiSA~~G~NI~~ll~~i~~~ip 199 (203)
T cd01888 147 IDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77788678999999999985521689985999147889799999999986782
No 136
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.59 E-value=3.2e-15 Score=112.12 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=105.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001026632986--899822642124731167751234433333578
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
|.+||-++||||||+++.....- ..+|.-|.-.-..-.+..++. .+.++|++|--+ -..+-.. ++..+++
T Consensus 4 ivllGd~~VGKTsli~r~~~~~f-~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~----~~~~~~~---y~~~a~~ 75 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ----FTAMRDL---YIKNGQG 75 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCHH----HHHHHHH---HHCCCCE
T ss_conf 99989999889999999971959-88669954206999999999999998645765445----5567898---8346876
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 87520222211013466678998777667505988999974658998899-99999999862994899988878899999
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
++.|.|+++++..+.+..+.+++..+. ...+-|.++|.||+||.++... .+..+.+.+..+.+.|.+||+++.||+++
T Consensus 76 ~ilvydvt~~~Sf~~l~~~~~~i~~~~-~~~~~piilVGnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAk~~~nV~e~ 154 (163)
T cd04136 76 FVLVYSITSQSSFNDLQDLREQILRVK-DTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEV 154 (163)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHC-CCCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 999704898899999999999999861-8888867876235472640789999999999984998999744878058999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780648|r 319 LECLHDKI 326 (335)
Q Consensus 319 ~~~I~e~L 326 (335)
.+.|.+.+
T Consensus 155 F~~l~~~i 162 (163)
T cd04136 155 FADLVRQI 162 (163)
T ss_pred HHHHHHHH
T ss_conf 99999963
No 137
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.59 E-value=5.7e-15 Score=110.60 Aligned_cols=153 Identities=12% Similarity=0.123 Sum_probs=105.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-CEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHH--HHHH
Q ss_conf 124421677753035410145401212110000001-02663298--689982264212473116775123443--3333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-LGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLK--HTER 236 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLr--hIer 236 (335)
|.+||-++||||||+++....+- ...|.-| .... .-.+..++ ..+.++|++|--+ .+.++ ++..
T Consensus 4 ivllGd~~VGKTsli~r~~~~~f-~~~y~pT-i~~~~~k~i~~~~~~~~l~iwDtaG~e~---------~~~~~~~~~~~ 72 (163)
T cd04176 4 VVVLGSGGVGKSALTVQFVSGTF-IEKYDPT-IEDFYRKEIEVDSSPSVLEILDTAGTEQ---------FASMRDLYIKN 72 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCCC-CCCEEEEEEEECCEEEEEEEEECCCCHH---------HHHHHHHHHCC
T ss_conf 99989999789999999970989-9755885-2331679999888999999998988542---------56788998557
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf 57887520222211013466678998777667505988999974658998899-99999999862994899988878899
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGI 315 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI 315 (335)
+++++.|.|+++++..+.++.+.+++.... ....-|.++|.||+||.+.... .+..+.+.+..+.+.|.+||++++||
T Consensus 73 a~~~ilvydit~~~Sf~~l~~~~~~i~~~~-~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~nV 151 (163)
T cd04176 73 GQGFIVVYSLVNQQTFQDIKPMRDQIVRVK-GYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMV 151 (163)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 865689712798899999999999999973-8999639997431340012769999999999985998999856878177
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780648|r 316 PQILECLHDKI 326 (335)
Q Consensus 316 ~eL~~~I~e~L 326 (335)
+++.+.|.++|
T Consensus 152 ~~~F~~l~~~i 162 (163)
T cd04176 152 NELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999953
No 138
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.59 E-value=4.1e-15 Score=111.43 Aligned_cols=156 Identities=13% Similarity=0.048 Sum_probs=106.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001026632986--899822642124731167751234433333578
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
|.+||-++||||||+++.....- ...|.-|.-.-..-.+..++. .+.++|++|--+ -..+-.. ++..+++
T Consensus 5 iv~lGd~~VGKTsli~r~~~~~f-~~~y~~Ti~~~~~k~~~~~~~~~~l~iwDtaG~e~----~~~~~~~---~~~~a~~ 76 (164)
T cd04145 5 LVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE----FSAMREQ---YMRTGEG 76 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC----CCHHHHH---HHCCCCC
T ss_conf 99999999788999999980989-87567841358999999999999999998988603----1256798---7346787
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 8752022221101346667899877766750598899997465899889-999999999862994899988878899999
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
++.|.|+++++..+..+.+.+++..+.. ..+-|.++|.||+||.+... ..+..+++.+..+.+.|.+||++++||+++
T Consensus 77 ~ilvydi~~~~Sf~~~~~~~~~i~~~~~-~~~~piilVgNK~DL~~~r~Vs~~e~~~~a~~~~~~~~E~SAk~~~nV~e~ 155 (164)
T cd04145 77 FLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKA 155 (164)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEECCCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 4689856735439999999999998618-877752653034573540889999999999981998999854868277999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780648|r 319 LECLHDKI 326 (335)
Q Consensus 319 ~~~I~e~L 326 (335)
.+.|.+.+
T Consensus 156 F~~l~~~I 163 (164)
T cd04145 156 FHDLVRVI 163 (164)
T ss_pred HHHHHHHH
T ss_conf 99999975
No 139
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=99.58 E-value=7.5e-15 Score=109.85 Aligned_cols=150 Identities=21% Similarity=0.338 Sum_probs=103.4
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEE--EECCEEEEEECCCCCCCCCCCCCCCHHHH--HH--HH
Q ss_conf 11244216777530354101454012121100000010266--32986899822642124731167751234--43--33
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIV--KEGYKEFILADIPGIIKNAHQGAGIGDRF--LK--HT 234 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv--~~~~~~~~i~D~PGlIegA~~~~glG~~F--Lr--hI 234 (335)
=|.+.|-=+-||+|||-+|-+++ |++-++--+.-|+|-+ ..+...++|.|||| |+ .| +| -.
T Consensus 119 vVtimGHVDHGKTsLLD~iR~t~--V~~~EaGGITQhIGA~~v~~~~~~itFiDTPG-----He------AFt~mR~RGa 185 (610)
T PRK12312 119 IVTIMGHVDHGKTTLLDTIRKTN--VVASEAGGITQHIGAYQVEYQGKKITFIDTPG-----HE------AFTEMRARGA 185 (610)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCCCCCCCEECEEEEEECCCEEEEECCCC-----HH------HHHHHHHCCC
T ss_conf 89996772577225889985486--41346776644004499986797689972896-----79------8999997077
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH------CC--CCEEE
Q ss_conf 33578875202222110134666789987776675059889999746589988999999999986------29--94899
Q gi|254780648|r 235 ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQ------CG--QVPFE 306 (335)
Q Consensus 235 er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~------~~--~~vi~ 306 (335)
.=||+.+.||++.+---.+..+.|.. ++. .+-|.||++||||+++++ ......+|.+. ++ ..++|
T Consensus 186 ~vtDI~iLVVaaddGv~pQTiEaI~~-ak~-----a~vpiiVAiNKiDkp~a~-~~~v~~~L~~~g~~~E~~GGdv~~V~ 258 (610)
T PRK12312 186 KVTDIVILVVAADDGVKPQTEEAIDH-AKA-----ANVPIIVFVNKMDKPNAN-PDRIKNELSKYDLVPEEWGGDTPFVY 258 (610)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHH-HHH-----CCCCEEEEECCCCCCCCC-HHHHHHHHHHHCCCHHHHCCCCEEEE
T ss_conf 65457999997578977426999999-997-----599889985044678898-78999999870766788579445999
Q ss_pred EECCCCCCHHHHHHHHH--HHHHHHH
Q ss_conf 98887889999999999--9998545
Q gi|254780648|r 307 FSSITGHGIPQILECLH--DKIFSIR 330 (335)
Q Consensus 307 ISA~tg~GI~eL~~~I~--e~L~~~r 330 (335)
|||++|+|+++|++.|. ..+.+++
T Consensus 259 iSAktg~GId~LLe~IlL~AE~leLk 284 (610)
T PRK12312 259 GSALKNEGIDELLDSILLLAEILNLK 284 (610)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 03687989999999999999987652
No 140
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.58 E-value=4.6e-15 Score=111.14 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=106.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-CEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHH--HHHH
Q ss_conf 124421677753035410145401212110000001-026632986--89982264212473116775123443--3333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-LGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLK--HTER 236 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLr--hIer 236 (335)
|.+||-++||||||+++....+- ...|.-| .... .-.+..++. .+.++|++|-= + .+.|+ ++..
T Consensus 4 IvllGd~~VGKTsli~r~~~~~f-~~~y~pT-i~~~~~k~i~~~~~~~~l~iwDtaG~e----~-----~~~l~~~y~~~ 72 (164)
T cd04175 4 LVVLGSGGVGKSALTVQFVQGIF-VEKYDPT-IEDSYRKQVEVDGQQCMLEILDTAGTE----Q-----FTAMRDLYMKN 72 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCCC-EEEEEEEEEEECCEEEEEEECCCCCCH----H-----HHHHHHHHHCC
T ss_conf 99989999759999999970928-8656884-046899999999999999851477543----2-----45678887357
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf 57887520222211013466678998777667505988999974658998899-99999999862994899988878899
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGI 315 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI 315 (335)
++.++.|.|.++++..+.++.+.+++..+. ...+-|.++|.||+||.+.... .+..+.+.+..+.+.+.+||++++||
T Consensus 73 a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~DL~~~r~V~~~~~~~~a~~~~~~~~E~SAk~~~nV 151 (164)
T cd04175 73 GQGFVLVYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINV 151 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 868999960787778999999999999862-8999639985214572220689999999999985999999668988178
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q gi|254780648|r 316 PQILECLHDKIF 327 (335)
Q Consensus 316 ~eL~~~I~e~L~ 327 (335)
+++...|.+.+.
T Consensus 152 ~~~F~~l~~~i~ 163 (164)
T cd04175 152 NEIFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999866
No 141
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.58 E-value=8.1e-15 Score=109.65 Aligned_cols=154 Identities=19% Similarity=0.173 Sum_probs=102.2
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010-2663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
|.+||-++||||||+.+....+- ..+|. .|..... -.+..++ ..+.|+|++|--+ -..|-.. +...++
T Consensus 1 ivllGd~~VGKTsli~r~~~~~f-~~~y~-~Ti~~~~~~~~~~~~~~~~l~i~DtaG~e~----~~~l~~~---~~~~a~ 71 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PEDYV-PTVFENYSADVEVDGKPVELGLWDTAGQED----YDRLRPL---SYPDTD 71 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCEEEEEEEEEEECCEEEEEEEEECCCCCC----CCCCCHH---HCCCCC
T ss_conf 59989789759999999953989-99857-850578999999999999999994898703----4545001---104886
Q ss_pred HHHHHCCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-------------HHHHHHHHHHHCC-CC
Q ss_conf 8875202222110134666-7899877766750598899997465899889-------------9999999998629-94
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQC-ILDELSAYNSELRKKIEIVGLSQIDTVDSDT-------------LARKKNELATQCG-QV 303 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~-I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-------------~~~~~~~l~~~~~-~~ 303 (335)
+++.|.|+++++..+.... +..++..+.+ +-|.++|.||+||.+... ..+..+++.+..+ ..
T Consensus 72 ~~ilvydvt~~~Sf~~~~~~w~~~i~~~~~---~~piilVgnK~DL~~~~~~~~~~~~~~~~~Vs~~~~~~~a~~~~~~~ 148 (174)
T smart00174 72 VFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVK 148 (174)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 899997589878999999989999998688---98699998754250123335455331465002999999999839978
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 899988878899999999999998
Q gi|254780648|r 304 PFEFSSITGHGIPQILECLHDKIF 327 (335)
Q Consensus 304 vi~ISA~tg~GI~eL~~~I~e~L~ 327 (335)
.|.+||++++||+++.+.+.+.+.
T Consensus 149 y~EtSAk~g~nV~e~F~~l~r~~l 172 (174)
T smart00174 149 YLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 999645889498999999999972
No 142
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.58 E-value=3.5e-15 Score=111.88 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=106.0
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--E--EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010--2--663298--689982264212473116775123443333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--G--IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTE 235 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--G--vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIe 235 (335)
|.++|-++||||||+.++....- ..+|. .|..... - .+...+ .++.++|++|--+ -..+-. .+..
T Consensus 3 ivvlGd~~VGKTsLi~r~~~~~f-~~~y~-~Tig~~~~~k~i~~~~~~~~v~l~iwDtaG~e~----~~~l~~---~~~~ 73 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKGIF-TKDYK-KTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE----FDAITK---AYYR 73 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCCEEEEEEEEECCCCEEEEEEEEECCCCCC----CCCCHH---HHHH
T ss_conf 99999999889999999984968-98768-855625788789986799799999997899701----341524---5612
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 357887520222211013466678998777667505988999974658998899-9999999986299489998887889
Q gi|254780648|r 236 RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHG 314 (335)
Q Consensus 236 r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~G 314 (335)
.+++++.|.|+++++..+.++.+.++++.+.+ +-|.++|.||+||.+.... .+..+.+.+..+.+.|.+||++++|
T Consensus 74 ~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~---~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~n 150 (162)
T cd04106 74 GAQACILVFSTTDRESFEAIESWKEKVEAECG---DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFN 150 (162)
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHHHHHCC---CCCEEEEECCHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 30312688406988999999999999997669---962999840544410177899999999998698799986888829
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780648|r 315 IPQILECLHDK 325 (335)
Q Consensus 315 I~eL~~~I~e~ 325 (335)
|+++.+.|.++
T Consensus 151 V~e~F~~la~k 161 (162)
T cd04106 151 VTELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999960
No 143
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.57 E-value=6.7e-15 Score=110.17 Aligned_cols=154 Identities=15% Similarity=0.167 Sum_probs=109.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------663298--6899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|-|||-+.||||||+++.+...= ..+| .|++| .+..++ .++.|+||+|- .+-+.|-..|
T Consensus 3 IvllGd~gVGKTsLi~rf~~~~F-~~~y-----~~Tig~d~~~k~i~~~~~~v~l~IWDTaGq----e~f~sl~~~y--- 69 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDDTF-CEAC-----KSGVGVDFKIKTVELRGKKIRLQIWDTAGQ----ERFNSITSAY--- 69 (202)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCC----CCCCCCHHHH---
T ss_conf 99999799729999999954999-9987-----997646889999999999999999979886----1245235788---
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHC-CCCEEEEECCC
Q ss_conf 33357887520222211013466678998777667505988999974658998899-99999999862-99489998887
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQC-GQVPFEFSSIT 311 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~-~~~vi~ISA~t 311 (335)
...+++++.|.|+++.+..+.+..+.+++..+.. .+.|.++|.||+||.+.... .+..+++.+.. +...|.+||++
T Consensus 70 yr~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~--~~~~iiLVGNK~DL~~~R~Vs~~e~~~~A~~~~~~~f~EtSAkt 147 (202)
T cd04120 70 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKD 147 (202)
T ss_pred HHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCEEEEEEECCCCHHHCCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 7641445899856888999999999999997466--88718987653650531787999999999827998899925899
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 8899999999999998545
Q gi|254780648|r 312 GHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 312 g~GI~eL~~~I~e~L~~~r 330 (335)
++||+++.+.|.+.+.+..
T Consensus 148 ~~nV~e~F~~l~~~i~~~~ 166 (202)
T cd04120 148 NFNVDEIFLKLVDDILKKM 166 (202)
T ss_pred CCCHHHHHHHHHHHHHHHC
T ss_conf 9698999999999999858
No 144
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.57 E-value=1.8e-14 Score=107.59 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=100.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE----EEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001026----6329868998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI----VKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv----v~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|-|||-++||||||+++....+= ....|.+|. .+.....+.|+||+|- .+=..|...| ...+
T Consensus 3 ivllGd~~VGKTsl~~rf~~~~F-------~~~~~Tig~~~~~k~~~~~~l~IwDTaGq----E~f~sl~~~y---~r~a 68 (220)
T cd04126 3 VVLLGDMNVGKTSLLHRYMERRF-------KDTVSTVGGAFYLKQWGPYNISIWDTAGR----EQFHGLGSMY---CRGA 68 (220)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-------CCCCCCCCEEEEEEECCEEEEEEEECCCC----CCCCCCHHHH---HCCC
T ss_conf 99999999889999999972989-------99888713689998764788999947986----2243326888---5679
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH-------------------H-HHHHHHHHH
Q ss_conf 78875202222110134666789987776675059889999746589988-------------------9-999999999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD-------------------T-LARKKNELA 297 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e-------------------~-~~~~~~~l~ 297 (335)
++++.|.|+++++..+.++.+..++..+.. .+.|.++|-||+||.+.. . ..+....+.
T Consensus 69 ~~~ilvyDit~~~Sf~~l~~~~~~~~~~~~--~~~~~ilVGNK~DL~~~~~~~~~~~~~~~~~~~~~~r~Vs~ee~~~~a 146 (220)
T cd04126 69 AAVILTYDVSNVQSLEELEDRFLGLTDTAN--EDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFY 146 (220)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCEEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 889999979898999999999999998479--998089998871213643443333333223441003544899999999
Q ss_pred HHC--------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 862--------------994899988878899999999999998545
Q gi|254780648|r 298 TQC--------------GQVPFEFSSITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 298 ~~~--------------~~~vi~ISA~tg~GI~eL~~~I~e~L~~~r 330 (335)
+.. ....|.+||++|.||+++.+.|.+.+.+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~fEtSAKtg~nV~e~F~~i~~~i~~~~ 193 (220)
T cd04126 147 KRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI 193 (220)
T ss_pred HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 98502202221111245776999147899798999999999999987
No 145
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.57 E-value=1.2e-14 Score=108.64 Aligned_cols=158 Identities=15% Similarity=0.135 Sum_probs=105.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-CEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001-02663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-LGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
|.+||-++||||||+++....+= ..+|. .|+... .-.+..++ ..+.++|++|--+ -..+-.. ++..++
T Consensus 4 ivlvGd~~VGKTsli~rf~~~~f-~~~y~-pTi~~~~~k~i~i~~~~~~l~iwDtaG~e~----~~~~~~~---~~~~a~ 74 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNVF-IESYD-PTIEDSYRKQVEIDGRQCDLEILDTAGTEQ----FTAMREL---YIKSGQ 74 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCCEEEEEEEECCEEEEEEEEECCCCCC----CCCCHHH---HHCCCC
T ss_conf 99989999779999999961938-98658-833315999999999999999982788623----3345154---512686
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCC-CCEEEEECCCCCCHH
Q ss_conf 887520222211013466678998777667505988999974658998899-999999998629-948999888788999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCG-QVPFEFSSITGHGIP 316 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~-~~vi~ISA~tg~GI~ 316 (335)
+++.|.|+++++..+.+..+.+++..+.. -..-|.++|.||+||.+.... .+...++.+..+ .+.+.+||++++||+
T Consensus 75 ~~ilvydvt~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~DL~~~r~v~~~e~~~~a~~~~~~~~~E~SAk~~~nV~ 153 (168)
T cd04177 75 GFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVD 153 (168)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 67985368988899999999999998517-88874898873146121376899999999997499779996248784689
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999854
Q gi|254780648|r 317 QILECLHDKIFSI 329 (335)
Q Consensus 317 eL~~~I~e~L~~~ 329 (335)
++.+.|.+.+...
T Consensus 154 e~F~~l~~~il~~ 166 (168)
T cd04177 154 EVFIDLVRQIICV 166 (168)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998
No 146
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.57 E-value=8.4e-15 Score=109.57 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=104.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEE-ECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010-2663-298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVK-EGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~-~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|.|||-++||||||+++++...- ..+|. .|..... -.+. .++ ..+.++|++|--+ -..+... +...+
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~F-~~~~~-pTi~~~~~~~~~~~~~~~v~l~iwDtaG~e~----~~~l~~~---~~~~a 73 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQGKF-PEEYV-PTVFENYVTNIQGPNGKIIELALWDTAGQEE----YDRLRPL---SYPDV 73 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCEEEEEEEEEEEECCEEEEEEEEECCCCCC----CCCCHHH---HHHHC
T ss_conf 99999499769999999963989-99758-9664799999995499899999996999711----0534344---53003
Q ss_pred HHHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-----HHHHHHHHHHHCCC-CEEEEECC
Q ss_conf 7887520222211013466-67899877766750598899997465899889-----99999999986299-48999888
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDT-----LARKKNELATQCGQ-VPFEFSSI 310 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-----~~~~~~~l~~~~~~-~vi~ISA~ 310 (335)
++++.|.|+++++..+... .+..|+..+.+ +-|.++|.||+||.+... ..+...++.+..+. ..|.+||+
T Consensus 74 ~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~---~~piilVgnK~DL~~~~~~~~~v~~e~~~~~a~~~~~~~y~EtSAk 150 (187)
T cd04132 74 DVLLICYAVDNPTSLDNVEDKWFPEVNHFCP---GTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAK 150 (187)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 4888950368767799999999999998689---9997999987221221223765789999999998599789995768
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 78899999999999998545
Q gi|254780648|r 311 TGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 311 tg~GI~eL~~~I~e~L~~~r 330 (335)
+++||+++.+.|.+.+.+..
T Consensus 151 ~g~nV~e~F~~l~~~il~~~ 170 (187)
T cd04132 151 TMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHC
T ss_conf 89298999999999998544
No 147
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.56 E-value=1.5e-14 Score=108.08 Aligned_cols=153 Identities=15% Similarity=0.118 Sum_probs=109.8
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHH-
Q ss_conf 12442167775303541014540121211000000102------663298--689982264212473116775123443-
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLK- 232 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLr- 232 (335)
|.+||-++||||||+.+++..+- ..+| .|++| .+..++ ..+.++||+|--. ......+
T Consensus 5 iv~lGd~~VGKTsli~r~~~~~F-~~~~-----~~Tig~d~~~k~i~v~~~~v~l~iwDtaG~e~-------~~~s~~~~ 71 (170)
T cd04115 5 IIVIGDSNVGKTCLTYRFCAGRF-PERT-----EATIGVDFRERTVEIDGERIKVQLWDTAGQER-------FRKSMVQH 71 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCC-----CCCEEEEEEEEEEEECCEEEEEEEEECCCCHH-------HHHHHHHH
T ss_conf 99999799779999999953988-9987-----88630787899999999999999997788530-------56777899
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECC-
Q ss_conf 33335788752022221101346667899877766750598899997465899889-9999999998629948999888-
Q gi|254780648|r 233 HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSI- 310 (335)
Q Consensus 233 hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~- 310 (335)
+...+++++.|.|+++++..+.+..+.+|+..+... .+-|.++|.||+||.+... ..+..+++.+..+.+.|.+||+
T Consensus 72 ~~~~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~-~~~p~vlVGNK~DL~~~r~Vs~~e~~~~a~~~~~~~~E~SAK~ 150 (170)
T cd04115 72 YYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCCCEEEEECCCC
T ss_conf 845773579995047476799999999999986588-8997999999821341178799999999997799999988899
Q ss_pred --CCCCHHHHHHHHHHHHHH
Q ss_conf --788999999999999985
Q gi|254780648|r 311 --TGHGIPQILECLHDKIFS 328 (335)
Q Consensus 311 --tg~GI~eL~~~I~e~L~~ 328 (335)
+++||+++...|.+.|.+
T Consensus 151 ~~~~~nV~~~F~~la~~i~~ 170 (170)
T cd04115 151 PSENDHVEAIFMTLAHKLKS 170 (170)
T ss_pred CCCCCCHHHHHHHHHHHHCC
T ss_conf 85170889999999999609
No 148
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.56 E-value=7.5e-15 Score=109.85 Aligned_cols=154 Identities=12% Similarity=0.120 Sum_probs=104.2
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCC-CEECCEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHH-HHHHHH
Q ss_conf 12442167775303541014540121211000-000102663298--68998226421247311677512344-333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTT-LYPNLGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFL-KHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT-~~P~lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FL-rhIer~ 237 (335)
|.+||-+++|||||++++....- .-.|.=|. .+-..-.+..++ ..+.|+|++|--+- . ..+ -++..+
T Consensus 3 i~vvG~~~vGKTsli~r~~~~~f-~~~~~~tig~d~~~k~v~~~~~~~~l~i~D~~g~e~~----~----~~~~~~~~~~ 73 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDTF-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF----R----SLIPSYIRDS 73 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHH----H----HHHHHHHHHH
T ss_conf 99999799789999999931999-9984897567889999999999999999979985315----7----8889886652
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 7887520222211013466678998777667505988999974658998899-999999998629948999888788999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
+++++|.|.++++..+.+..+.+++..+.. .+.|.++|.||+|+.++... .+..+.+.+..+.+.+.+||++++||+
T Consensus 74 ~~~ilvfd~t~~~Sf~~~~~w~~~i~~~~~--~~~~ivlvGnK~Dl~~~r~v~~~e~~~~a~~~~~~y~E~Sak~~~nV~ 151 (161)
T cd01861 74 SVAVVVYDITNRQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVK 151 (161)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCEEEEEEECCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 589999847998999999999999998657--898499961021102217789999999999849989998347780889
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780648|r 317 QILECLHDKI 326 (335)
Q Consensus 317 eL~~~I~e~L 326 (335)
++.+.|.+.|
T Consensus 152 e~F~~la~~l 161 (161)
T cd01861 152 ELFRKIASAL 161 (161)
T ss_pred HHHHHHHHHC
T ss_conf 9999999709
No 149
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.56 E-value=1.1e-14 Score=108.90 Aligned_cols=161 Identities=9% Similarity=0.046 Sum_probs=106.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298--6899822642124731167751234433333578
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
|.++|-+.||||||+.+.....= ...|.=|.-.-+.-.+..++ ..+.|+||+|--+ -..+-. .++..+++
T Consensus 2 IvvlGd~~VGKTSLi~rf~~~~F-~~~y~~Ti~~~~~k~~~v~~~~v~l~i~DtaG~e~----~~~l~~---~~~r~a~~ 73 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTF-EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS----FPAMRK---LSIQNSDA 73 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCCCHHHEEEEEEEECCEEEEEEEEECCCCCC----CHHHHH---HHCCCCCE
T ss_conf 89999899779999999985989-98888872541889999899799999997877513----014555---54158866
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH-H-HHHHHHHHHH-HCCCCEEEEECCCCCCHH
Q ss_conf 875202222110134666789987776675059889999746589988-9-9999999998-629948999888788999
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD-T-LARKKNELAT-QCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e-~-~~~~~~~l~~-~~~~~vi~ISA~tg~GI~ 316 (335)
++.|.|+++.+..+.++.+.+++..+... ..-|.++|.||+|+++.+ . ..+....+.+ ..+...|.+||++++||+
T Consensus 74 ~ilVyDit~~~Sf~~l~~w~~~i~~~~~~-~~ipiilVGNK~Dll~~~R~V~~~e~~~~a~~~~~~~f~EtSAktg~nV~ 152 (198)
T cd04147 74 FALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVL 152 (198)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 89996169779999999999999996288-89828999878765010478489999999985599789987799994989
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999985452
Q gi|254780648|r 317 QILECLHDKIFSIRG 331 (335)
Q Consensus 317 eL~~~I~e~L~~~r~ 331 (335)
++.+.|...+.....
T Consensus 153 e~F~~l~r~i~~~~~ 167 (198)
T cd04147 153 EVFKELLRQANLPYN 167 (198)
T ss_pred HHHHHHHHHHCCHHH
T ss_conf 999999999773532
No 150
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.55 E-value=5.3e-14 Score=104.71 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=93.8
Q ss_pred ECEEEEECCCCCCCEEEEEE---CCCCC---HH----HHHH------HCCCEECCEEEEECCEEEEEECCCCCCCCCCCC
Q ss_conf 01124421677753035410---14540---12----1211------000000102663298689982264212473116
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASV---TRAKP---KI----ADYP------FTTLYPNLGIVKEGYKEFILADIPGIIKNAHQG 223 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~l---s~ak~---kI----a~yp------FTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~ 223 (335)
-.|+++|-..+|||||+.+| |+.-. .+ .||- ..|+....-.+.+.+..+.++|+||-
T Consensus 3 RNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH------- 75 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH------- 75 (194)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCC-------
T ss_conf 7899990689879999999999748763046521686147588887287633458999989988999989984-------
Q ss_pred CCCHHHHHHH----HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH--HHHHHHHHHH
Q ss_conf 7751234433----333578875202222110134666789987776675059889999746589988--9999999999
Q gi|254780648|r 224 AGIGDRFLKH----TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD--TLARKKNELA 297 (335)
Q Consensus 224 ~glG~~FLrh----Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e--~~~~~~~~l~ 297 (335)
..|.+. +.-++..+.|||+.+- +..+-+........ ...|.++++||+|..+++ +..+.+.++.
T Consensus 76 ----~dF~~~~~~~~~~~D~ailVVdA~~G-v~~QT~~~l~~a~~-----~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~ 145 (194)
T cd01891 76 ----ADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE-----LGLKPIVVINKIDRPDARPEEVVDEVFDLF 145 (194)
T ss_pred ----HHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf ----77777898776434467898653789-75899999999987-----299749988564589888999999999999
Q ss_pred HHC-------CCCEEEEECCCC----------CCHHHHHHHHHHHH
Q ss_conf 862-------994899988878----------89999999999999
Q gi|254780648|r 298 TQC-------GQVPFEFSSITG----------HGIPQILECLHDKI 326 (335)
Q Consensus 298 ~~~-------~~~vi~ISA~tg----------~GI~eL~~~I~e~L 326 (335)
... +.+++++||++| +++++|+++|.+++
T Consensus 146 ~~~~~~~~~~~~pii~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~i 191 (194)
T cd01891 146 IELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHV 191 (194)
T ss_pred HHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 8639993335885787256553357788656465999999999658
No 151
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.55 E-value=9.9e-15 Score=109.13 Aligned_cols=159 Identities=13% Similarity=0.038 Sum_probs=106.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010-2663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
|.+||-++||||||+.+.....= ...|. +|..... -.+..++ ..+.|+||+|--+ =..|-.. ++..++
T Consensus 5 iv~lGd~~VGKTsli~r~~~~~f-~~~~~-pTi~~~~~~~i~i~~~~~~l~iwDtaGqe~----~~~l~~~---~~r~a~ 75 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQFISHSF-PDYHD-PTIEDAYKQQARIDNEPALLDILDTAGQAE----FTAMRDQ---YMRCGE 75 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCCCEEEEEEECCEEEEEEEEECCCCCC----CCCCHHH---HHCCCC
T ss_conf 99999999779999999970989-98758-842220369999999999999997888513----5745155---642786
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 887520222211013466678998777667505988999974658998899-9999999986299489998887889999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
.++.|.|++++...+....+.+++..... -.+-|.++|.||+||.+.... .+....+.+..+.+.|.+||+++.||++
T Consensus 76 ~~ilvydvt~~~Sf~~~~~w~~~i~~~~~-~~~~piilvGNK~DL~~~r~Vs~~e~~~~a~~~~~~f~EtSAk~~~nV~e 154 (172)
T cd04141 76 GFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDD 154 (172)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 56887316888899999999999999728-89986899850456676188899999999998599799974788828899
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999998545
Q gi|254780648|r 318 ILECLHDKIFSIR 330 (335)
Q Consensus 318 L~~~I~e~L~~~r 330 (335)
+.+.|.+.+.+-.
T Consensus 155 ~F~~l~~~i~~k~ 167 (172)
T cd04141 155 AFHGLVREIRRKE 167 (172)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999998635
No 152
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.55 E-value=1.3e-14 Score=108.37 Aligned_cols=152 Identities=22% Similarity=0.188 Sum_probs=99.8
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001026632986--899822642124731167751234433333578
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
|.|||-++||||||++++...+- ..+|.-|......-.+..++. .+.|+|++|--+- ..+-.. ++..+++
T Consensus 3 i~llGd~~VGKTsli~r~~~~~f-~~~y~~Ti~~~~~~~~~~~~~~~~l~iwDt~G~e~~----~~~~~~---~~~~a~~ 74 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGKF-PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEY----DRLRPL---SYPNTDV 74 (171)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCC----CCCHHH---HHHHCCE
T ss_conf 99999999669999999962999-987588034666899999999999999989987102----413223---4442658
Q ss_pred HHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH------------HHHHHHHHHHHCCC-CEE
Q ss_conf 87520222211013466-67899877766750598899997465899889------------99999999986299-489
Q gi|254780648|r 240 LLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDT------------LARKKNELATQCGQ-VPF 305 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~------------~~~~~~~l~~~~~~-~vi 305 (335)
++.|.|+++++..+... .+..++..+.+ +.|.++|.||+||.+... ..+..+++.+..+. +.+
T Consensus 75 ~ilvydit~~~Sf~~i~~~w~~~i~~~~~---~~piilvgNK~DL~~~~~~~~~~~~~~r~V~~~e~~~~a~~~~~~~f~ 151 (171)
T cd00157 75 FLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYM 151 (171)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 99999689778899999999999998599---986899998710012300022331147515899999999984998899
Q ss_pred EEECCCCCCHHHHHHHHHH
Q ss_conf 9988878899999999999
Q gi|254780648|r 306 EFSSITGHGIPQILECLHD 324 (335)
Q Consensus 306 ~ISA~tg~GI~eL~~~I~e 324 (335)
.+||++++||+++.+.|.+
T Consensus 152 E~SAk~g~nV~e~F~~l~r 170 (171)
T cd00157 152 ECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EECCCCCCCHHHHHHHHHC
T ss_conf 9787899598999999966
No 153
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.55 E-value=2.3e-14 Score=106.91 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=104.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010-2663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
|.+||-++||||||+.+.+..+- ..+|. .|..... -.+..++ ..+.|+||+|--+- ..|-.. +...++
T Consensus 4 ivllGd~~VGKTsL~~rf~~~~F-~~~~~-pTi~~~~~~~i~v~~~~~~l~iwDTaG~e~~----~~l~~~---~y~~a~ 74 (176)
T cd04133 4 CVTVGDGAVGKTCMLICYTSNKF-PTDYI-PTVFDNFSANVSVDGNTVNLGLWDTAGQEDY----NRLRPL---SYRGAD 74 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCEEEEEEEEEEECCEEEEEEEEECCCCCCC----CHHHHH---HHCCCC
T ss_conf 99989999779999999965989-99867-8535899999999998999999979997654----246898---726787
Q ss_pred HHHHHCCCCCCCHHHH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-----------HHHHHHHHHHHCCCC-EE
Q ss_conf 8875202222110134-6667899877766750598899997465899889-----------999999999862994-89
Q gi|254780648|r 239 VLLHIVSALEENVQAA-YQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-----------LARKKNELATQCGQV-PF 305 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~-~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-----------~~~~~~~l~~~~~~~-vi 305 (335)
+.+.|.|.++++..+. .+.+..|++.+.+ +-|.++|.||+||.+... ..+.-.++.+..+.. .|
T Consensus 75 ~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~---~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~~~~y~ 151 (176)
T cd04133 75 VFVLAFSLISRASYENVLKKWVPELRHYAP---NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYI 151 (176)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 579999789878999999999999998684---99889999863202122233330246777799999999977997899
Q ss_pred EEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 99888788999999999999985
Q gi|254780648|r 306 EFSSITGHGIPQILECLHDKIFS 328 (335)
Q Consensus 306 ~ISA~tg~GI~eL~~~I~e~L~~ 328 (335)
.+||++++||+++.+.+.+.+.+
T Consensus 152 EtSAk~~~nV~e~F~~~~~~il~ 174 (176)
T cd04133 152 ECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred EECCCCCCCHHHHHHHHHHHHHC
T ss_conf 94789880989999999999808
No 154
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.55 E-value=1e-14 Score=109.04 Aligned_cols=154 Identities=14% Similarity=0.068 Sum_probs=100.8
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEEC--CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010266329--86899822642124731167751234433333578
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEG--YKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~--~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
|.+||-++||||||++++.+.+- ...|| +|.....-.+..+ ...+.++|++|--+ -..+-.. .+..+++
T Consensus 3 iv~vGd~~VGKTsli~r~~~~~F-~~~~~-~t~~~~~~~~~~~~~~v~l~i~DtaG~e~----~~~~~~~---~~~~a~~ 73 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLVSEEF-PENVP-RVLPEITIPADVTPERVPTTIVDTSSRPQ----DRANLAA---EIRKANV 73 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCCEEEEEEECCEEEEEEEEECCCCCC----CCHHHHH---HHCCCCE
T ss_conf 99999999899999999984978-88777-63456899999889099999998998723----0245798---7368988
Q ss_pred HHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH---HHHHHHHHHCC--CCEEEEECCCCC
Q ss_conf 87520222211013466-6789987776675059889999746589988999---99999998629--948999888788
Q gi|254780648|r 240 LLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDTLA---RKKNELATQCG--QVPFEFSSITGH 313 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~---~~~~~l~~~~~--~~vi~ISA~tg~ 313 (335)
++.|.|+++++..+... .+..+++.+.+ +-|.++|.||+||.+..... +....+.+... ...+.+||++++
T Consensus 74 ~ilvydit~~~Sf~~i~~~w~~~i~~~~~---~~piilvGNK~DL~~~r~~~~~e~~~~~~~~~~~~~~~~~EtSAktg~ 150 (166)
T cd01893 74 ICLVYSVDRPSTLERIRTKWLPLIRRLGV---KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99997089877899999999999998689---996899998865400250335889999999973074889990658891
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 99999999999998
Q gi|254780648|r 314 GIPQILECLHDKIF 327 (335)
Q Consensus 314 GI~eL~~~I~e~L~ 327 (335)
||+++.+.+.+.+.
T Consensus 151 nV~e~F~~~~k~~l 164 (166)
T cd01893 151 NVSEVFYYAQKAVL 164 (166)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 98999999999980
No 155
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.55 E-value=2.5e-14 Score=106.69 Aligned_cols=154 Identities=17% Similarity=0.136 Sum_probs=100.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001026632986--899822642124731167751234433333578
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
|.+||-++||||||+.+.....- ..+|.-|.-.-..-.+..++. .+.|+||+|--+ -..+-.. +...+++
T Consensus 4 i~liGd~~VGKTsli~r~~~~~F-~~~y~pTi~~~~~~~i~~~~~~v~l~iwDtaG~e~----~~~~~~~---~~~~a~~ 75 (175)
T cd01870 4 LVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED----YDRLRPL---SYPDTDV 75 (175)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC----CCCCHHH---HHCCCCE
T ss_conf 99999899669999999970989-99847843689999999999999999997776613----2324044---3148878
Q ss_pred HHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-------------HHHHHHHHHHCCC-CE
Q ss_conf 87520222211013466-678998777667505988999974658998899-------------9999999986299-48
Q gi|254780648|r 240 LLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-------------ARKKNELATQCGQ-VP 304 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-------------~~~~~~l~~~~~~-~v 304 (335)
++.|.|+++++..+.+. .+..++..+.+ +-|.++|.||+||.+.+.. .+.-.++.+..+. ..
T Consensus 76 ~ilvydi~~~~Sf~~~~~~w~~~i~~~~~---~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~eg~~~a~~~~~~~f 152 (175)
T cd01870 76 ILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGY 152 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 99998659879999999999999997298---998999987243343323456665402556689999999997499789
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998887889999999999999
Q gi|254780648|r 305 FEFSSITGHGIPQILECLHDKI 326 (335)
Q Consensus 305 i~ISA~tg~GI~eL~~~I~e~L 326 (335)
|.+||++++||+++.+.+.+.+
T Consensus 153 ~EtSAk~~~nV~e~Fe~~~k~~ 174 (175)
T cd01870 153 MECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEECCCCCCCHHHHHHHHHHHH
T ss_conf 9976899979899999999986
No 156
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.55 E-value=9e-15 Score=109.38 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=106.5
Q ss_pred EECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE------EEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 421677753035410145401212110000001026------63298--6899822642124731167751234433333
Q gi|254780648|r 165 IGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI------VKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTER 236 (335)
Q Consensus 165 VG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv------v~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer 236 (335)
||-+.||||||+++.....-. ..-.|++|+ +..++ ..+.++||+|-- +=..|-.. +...
T Consensus 1 vGD~gVGKTsli~R~~~~~F~------~~y~pTiGvd~~~~~~~~~~~~i~l~iWDTAGqE----~f~sl~~~---yyr~ 67 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE------KKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE----KFGGLRDG---YYIQ 67 (200)
T ss_pred CCCCCCCHHHHHHHHHCCCCC------CCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCC----CCCCCCHH---HCCC
T ss_conf 989887899999999409999------9978871489899999989989999999898870----00110265---5057
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 57887520222211013466678998777667505988999974658998899999999998629948999888788999
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
++..+.|.|+++++..+.+..+.+++..+.+ +.|.++|.||+||.+.+-. .....+.+..+.+.|.+||+++.|++
T Consensus 68 a~~~IlvfDvt~~~SF~~l~~W~~~l~~~~~---~ipiiLvGNK~DL~~r~V~-~e~~~~a~~~~~~y~EtSAKt~~Nv~ 143 (200)
T smart00176 68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDVKDRKVK-AKSITFHRKKNLQYYDISAKSNYNFE 143 (200)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCCCC-HHHHHHHHHCCCCEEEEECCCCCCHH
T ss_conf 8788999635877899989999999998579---9988999988757404365-99999999879978983004696979
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999998545
Q gi|254780648|r 317 QILECLHDKIFSIR 330 (335)
Q Consensus 317 eL~~~I~e~L~~~r 330 (335)
++..+|.+.|....
T Consensus 144 e~F~~Lar~L~~~~ 157 (200)
T smart00176 144 KPFLWLARKLIGDP 157 (200)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999983899
No 157
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.54 E-value=2e-14 Score=107.24 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=104.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-CEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001-02663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-LGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
|.+||-++||||||+.+....+= ..+|. .|.... .-.+..++ ..+.|+|++|-= +-..+-.. ++..++
T Consensus 4 ivllGd~~VGKTsli~r~~~~~F-~~~y~-~Ti~~~~~~~i~~~~~~~~l~iwDtaG~e----~~~~l~~~---~~~~a~ 74 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVKGTF-RESYI-PTIEDTYRQVISCSKNICTLQITDTTGSH----QFPAMQRL---SISKGH 74 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCCEEEEEEEECCEEEEEEEEECCCCC----CCCCCHHH---HHCCCC
T ss_conf 99989999769999999964969-99868-84542055899999999999999899984----65423244---506885
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 88752022221101346667899877766-7505988999974658998899-999999998629948999888788999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNS-ELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~-~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
+++.|.|+++++..+.++.+.+++..+.. ...+-|.++|.||+|+.+.... .+..+.+.+..+.+.|.+||++++||+
T Consensus 75 ~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~nV~ 154 (165)
T cd04140 75 AFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQ 154 (165)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 79998138987899999999999999961588888789986424640027889999999999869889997447794879
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780648|r 317 QILECLHDK 325 (335)
Q Consensus 317 eL~~~I~e~ 325 (335)
++.+.|.++
T Consensus 155 e~F~~l~~l 163 (165)
T cd04140 155 ELFQELLNL 163 (165)
T ss_pred HHHHHHHHC
T ss_conf 999999814
No 158
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=2.3e-14 Score=106.87 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=101.2
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010--2663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
+-++|-++||||||+++..+.+-...+|+= |+.... -.+..++ ..++++|++|-= ...-+.. .++..|
T Consensus 7 ~~VlG~~~VGKTsLi~rf~~~~f~~~~y~~-Ti~~~~~~k~v~v~g~~~~L~i~Dt~g~e----~~~~l~~---~~~~~a 78 (169)
T cd01892 7 CFVLGAKGSGKSALLRAFLGRSFSLNAYSP-TIKPRYAVNTVEVYGQEKYLILREVGEDE----VAILLND---AELAAC 78 (169)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCC-CCCCEEEEEEEEECCEEEEEEEEECCCCH----HHHHHHH---HHHCCC
T ss_conf 999999998899999999649998666567-54661899999989999999998556532----3556658---875469
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH-HHHHHHHHHCCCCE-EEEECCCCCCH
Q ss_conf 78875202222110134666789987776675059889999746589988999-99999998629948-99988878899
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLA-RKKNELATQCGQVP-FEFSSITGHGI 315 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~-~~~~~l~~~~~~~v-i~ISA~tg~GI 315 (335)
++.+.|.|+++++..+....+.++ + ....+.|.++|.||+||.+..... +.-+++.+..+.+. +.+||++|.|+
T Consensus 79 d~~ilVyDit~~~SF~~i~~~~~~---~-~~~~~iP~vlVgNK~DL~~~rqV~~~e~~~~a~~~~~~~~~e~SAktg~nv 154 (169)
T cd01892 79 DVACLVYDSSDPKSFSYCAEVYKK---Y-FMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSS 154 (169)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHH---H-HCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCH
T ss_conf 889999979987899999999997---0-056898189998865542037546776999999839996669983279898
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q gi|254780648|r 316 PQILECLHDKIF 327 (335)
Q Consensus 316 ~eL~~~I~e~L~ 327 (335)
+++...|.+.-.
T Consensus 155 ~~~F~~la~~a~ 166 (169)
T cd01892 155 NELFTKLATAAQ 166 (169)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999976
No 159
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.53 E-value=3.2e-14 Score=106.06 Aligned_cols=159 Identities=15% Similarity=0.100 Sum_probs=105.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-CEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001-026632986--89982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-LGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
|.+||-+.||||||+++....+- ...|. +|.... .-.+..++. .+.|+||+|--+ -..+-.. +...++
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~F-~~~y~-~Ti~~~~~~~~~v~~~~v~l~iwDTaGqe~----~~~i~~~---~y~~a~ 73 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFTRGYF-PQVYE-PTVFENYVHDIFVDGLHIELSLWDTAGQEE----FDRLRSL---SYADTD 73 (189)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCCC-CCEEEEEEEEEEECCEEEEEEEEECCCCCC----CCHHHHH---HHCCCC
T ss_conf 99999799769999999970999-99868-837899999999999999999984778500----0035567---643786
Q ss_pred HHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH-------------HHHHHHHCC-CC
Q ss_conf 887520222211013466-678998777667505988999974658998899999-------------999998629-94
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARK-------------KNELATQCG-QV 303 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~-------------~~~l~~~~~-~~ 303 (335)
+++.|.|+++++..+++. .+..|+..+.+ .-|.++|.||+||.+.....+. -..+.+..+ ..
T Consensus 74 ~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~---~~piiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~~Ak~~~~~~ 150 (189)
T cd04134 74 VIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALR 150 (189)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCE
T ss_conf 459999789878999999999999997497---99789999880046532356777663046658999999999829978
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89998887889999999999999854523
Q gi|254780648|r 304 PFEFSSITGHGIPQILECLHDKIFSIRGE 332 (335)
Q Consensus 304 vi~ISA~tg~GI~eL~~~I~e~L~~~r~e 332 (335)
.|.+||++++||+++...+.+.+...++.
T Consensus 151 y~EtSAkt~~nV~e~F~~lar~~l~~~~~ 179 (189)
T cd04134 151 YLECSAKLNRGVNEAFTEAARVALNVRPP 179 (189)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99968067949899999999999735898
No 160
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.52 E-value=4.6e-14 Score=105.09 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=107.7
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1124421677753035410145401212110000001026632986--89982264212473116775123443333357
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
-|.+||-++||||||+.++....- ...|.=|...-..-.+..++. .+.|+||+|--+ -..+-.. +...++
T Consensus 3 KivllGd~~VGKTsLi~r~~~~~f-~~~y~pTi~~~~~~~i~v~~~~v~l~iwDTaG~e~----~~~~~~~---~~~~a~ 74 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF-PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEE----YERLRPL---SYSKAH 74 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC-CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC----CCCCCCC---EECCCC
T ss_conf 999999899768999999982989-99878866789899999999999999997888703----4546041---233885
Q ss_pred HHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHH-----------HHHHHHHHHHHHCCC-CEE
Q ss_conf 887520222211013466-6789987776675059889999746589988-----------999999999986299-489
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSD-----------TLARKKNELATQCGQ-VPF 305 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e-----------~~~~~~~~l~~~~~~-~vi 305 (335)
+++.|.|+++++..+... .+..|+..+.+ +-|.++|.||+||.+.. -..+.-..+.+..+. ..|
T Consensus 75 ~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~---~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~~a~~~~~~~y~ 151 (187)
T cd04129 75 VILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 899970269866799999999999998587---99889998860011341121112231557899999999984997899
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 9988878899999999999998545230
Q gi|254780648|r 306 EFSSITGHGIPQILECLHDKIFSIRGEN 333 (335)
Q Consensus 306 ~ISA~tg~GI~eL~~~I~e~L~~~r~e~ 333 (335)
.+||++++||+++.+.+.+.+...++..
T Consensus 152 EtSAk~~~nV~e~F~~~~r~~l~~~~~~ 179 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAALLVRKSE 179 (187)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9688999798999999999997520368
No 161
>KOG0070 consensus
Probab=99.52 E-value=9.9e-14 Score=103.05 Aligned_cols=151 Identities=24% Similarity=0.256 Sum_probs=109.6
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHH-HH
Q ss_conf 112442167775303541014540121211000000102----6632986899822642124731167751234433-33
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKH-TE 235 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrh-Ie 235 (335)
-|-+||+-||||||+|..+--... +|| .|.+| .+++.+.+|.++|+-|- .+-+- ..+| ..
T Consensus 19 ~IlmvGLD~AGKTTILyklk~~E~------vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq----~k~R~----lW~~Y~~ 83 (181)
T KOG0070 19 RILMVGLDAAGKTTILYKLKLGEI------VTT-VPTIGFNVETVEYKNISFTVWDVGGQ----EKLRP----LWKHYFQ 83 (181)
T ss_pred EEEEEECCCCCCCEEEEECCCCCC------CCC-CCCCCCCEEEEEECCEEEEEEECCCC----CCCCC----CHHHHCC
T ss_conf 999996168986015675025874------147-78645313699986618999815887----35453----1353203
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH--HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH----HCCCCEEEEEC
Q ss_conf 3578875202222110134666789987776--67505988999974658998899999999998----62994899988
Q gi|254780648|r 236 RTHVLLHIVSALEENVQAAYQCILDELSAYN--SELRKKIEIVGLSQIDTVDSDTLARKKNELAT----QCGQVPFEFSS 309 (335)
Q Consensus 236 r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~--~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~----~~~~~vi~ISA 309 (335)
.++.|+||||.++++-.+ ..++||...- +++...|.++.+||.|++.+-...++.+.+.- ..+|.+...+|
T Consensus 84 nt~~lIfVvDS~Dr~Ri~---eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070 84 NTQGLIFVVDSSDRERIE---EAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred CCCEEEEEEECCCHHHHH---HHHHHHHHHHCCCCCCCCEEEEEECHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 772799998177388899---99999999976834477369998421204245788898867433014688728953013
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q ss_conf 87889999999999999854
Q gi|254780648|r 310 ITGHGIPQILECLHDKIFSI 329 (335)
Q Consensus 310 ~tg~GI~eL~~~I~e~L~~~ 329 (335)
.+|+|+.|-++++.+.+.+.
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred CCCCCHHHHHHHHHHHHHCC
T ss_conf 56544899999999986307
No 162
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.51 E-value=5.8e-14 Score=104.49 Aligned_cols=151 Identities=19% Similarity=0.157 Sum_probs=100.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE-EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHH--HHHH
Q ss_conf 12442167775303541014540121211000000102-663298--689982264212473116775123443--3333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG-IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLK--HTER 236 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG-vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLr--hIer 236 (335)
|.+||-++||||||+.+....+- ..+|. .|.....- .+..++ ..+.++|++|--+ +.-++ ++..
T Consensus 4 ivlvGd~~VGKTsli~r~~~~~f-~~~~~-~Ti~~~~~~~i~~~~~~v~l~iwDtaGqe~---------~~~~~~~~~~~ 72 (174)
T cd01871 4 CVVVGDGAVGKTCLLISYTTNAF-PGEYI-PTVFDNYSANVMVDGKPVNLGLWDTAGQED---------YDRLRPLSYPQ 72 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CEEEEEEEEEEEECCEEEEEEEECCCCCCC---------CHHHHHHHHHH
T ss_conf 99989999869999999973999-99868-837887679999999999999986999724---------06788998740
Q ss_pred HHHHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH-------------HHHHHHHHCC-
Q ss_conf 57887520222211013466-67899877766750598899997465899889999-------------9999998629-
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDTLAR-------------KKNELATQCG- 301 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~-------------~~~~l~~~~~- 301 (335)
+++++.|.|.+++...+..+ .+..|+..+.+ +-|.++|.||+||.+.....+ .-..+.+..+
T Consensus 73 a~~~ilvydi~~~~SF~~i~~~w~~~i~~~~~---~~piiLVGnK~DL~~~~~~~~~~~~~~~~~vs~~eg~~~a~~~~~ 149 (174)
T cd01871 73 TDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 149 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 66899998679878899999999999998588---999798747301310045677886514677589999999987599
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9489998887889999999999999
Q gi|254780648|r 302 QVPFEFSSITGHGIPQILECLHDKI 326 (335)
Q Consensus 302 ~~vi~ISA~tg~GI~eL~~~I~e~L 326 (335)
...|.+||++++||+++.+.+.+.+
T Consensus 150 ~~f~EtSAk~~~nV~e~F~~lir~i 174 (174)
T cd01871 150 VKYLECSALTQKGLKTVFDEAIRAV 174 (174)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 7899918788959799999999519
No 163
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.50 E-value=4.1e-14 Score=105.37 Aligned_cols=114 Identities=20% Similarity=0.351 Sum_probs=75.6
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEE----CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 1124421677753035410145401212110000001026632----986899822642124731167751234433333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKE----GYKEFILADIPGIIKNAHQGAGIGDRFLKHTER 236 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~----~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer 236 (335)
.|-|+|..+|||+||++.|...+.. --.|+..||.+.+.. ....+.++|+||= .. |-.++++++..
T Consensus 2 tvLl~Gl~~aGKT~Lf~~L~~~~~~---~T~tS~~~n~~~~~~~~~~~~~~~~lvD~PGH-----~k--lR~~~~~~~~~ 71 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYR---STVTSIEPNVATFILNSEGKGKKFRLVDVPGH-----PK--LRDKLLETLKN 71 (203)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC---CCCCCCCCCCEEEECCCCCCCCEEEEEECCCC-----HH--HHHHHHHHHHH
T ss_conf 5999907999899999999749988---87788878620664024668727999987996-----88--99999999875
Q ss_pred -HHHHHHHCCCCCC--CHHHHHHHHHHHHHHHHHHH--CCCCEEEEEECCCCCCH
Q ss_conf -5788752022221--10134666789987776675--05988999974658998
Q gi|254780648|r 237 -THVLLHIVSALEE--NVQAAYQCILDELSAYNSEL--RKKIEIVGLSQIDTVDS 286 (335)
Q Consensus 237 -~~vLl~VVD~s~~--d~~~~~~~I~~EL~~y~~~L--~~Kp~IIVlNKiDl~~~ 286 (335)
++.|+||||+++. +..+.-+.|.+-|. +... ...|.+|++||.|+..+
T Consensus 72 ~~~gIVfvVDs~~~~~~l~~~Ae~Ly~iL~--~~~~~~~~iPvLIacNKqDl~tA 124 (203)
T cd04105 72 SAKGIVFVVDSATFQKNLKDVAEFLYDILT--DLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHH--HHHHCCCCCCEEEEEECCCCCCC
T ss_conf 498999999688751119999999999986--26643689988999866143457
No 164
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.50 E-value=5.3e-14 Score=104.73 Aligned_cols=161 Identities=11% Similarity=0.120 Sum_probs=107.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECCE--EEEEECCCCCCCCCCCCCCCHHHH---
Q ss_conf 12442167775303541014540121211000000102------6632986--899822642124731167751234---
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGYK--EFILADIPGIIKNAHQGAGIGDRF--- 230 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~~--~~~i~D~PGlIegA~~~~glG~~F--- 230 (335)
|.++|-+.||||||+++....+= ..+| .|++| .+..++. .+.|+|+||.-.-.+ . -|.+|
T Consensus 3 ivvlG~~gVGKTsli~rf~~~~F-~~~y-----~pTig~~~~~k~v~~dg~~~~l~IwDtag~~~~~~-t--agqe~~~~ 73 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFLAQEF-PEEY-----IPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG-T--AGQEWMDP 73 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC-C--CCHHHHHH
T ss_conf 99999799899999999971988-8874-----78466167899999999999999995877304555-6--52123555
Q ss_pred -HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCEEEEEECCCCCCHHHHH-HHHHHHHHH-CCCCEEE
Q ss_conf -4333335788752022221101346667899877766-75059889999746589988999-999999986-2994899
Q gi|254780648|r 231 -LKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNS-ELRKKIEIVGLSQIDTVDSDTLA-RKKNELATQ-CGQVPFE 306 (335)
Q Consensus 231 -LrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~-~L~~Kp~IIVlNKiDl~~~e~~~-~~~~~l~~~-~~~~vi~ 306 (335)
.+.+..++..+.|.|+++.+..+..+.|.+++..... .-.+-|.++|.||+||.+..... +....+.+. .+...+.
T Consensus 74 r~~~ir~a~~~ilVydvt~~~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL~~~R~v~~~~~~~~a~~~~~~~f~E 153 (198)
T cd04142 74 RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLE 153 (198)
T ss_pred HHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 64401468889999988677888999999999999851479998289983454310035688999999998519976998
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9888788999999999999985452
Q gi|254780648|r 307 FSSITGHGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 307 ISA~tg~GI~eL~~~I~e~L~~~r~ 331 (335)
+||+++.||+++.+.|...+...+.
T Consensus 154 tSAK~~~nV~~~F~~lvr~i~~~~~ 178 (198)
T cd04142 154 CSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 8788996989999999999986044
No 165
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.50 E-value=8.2e-14 Score=103.54 Aligned_cols=151 Identities=21% Similarity=0.205 Sum_probs=102.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE-EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHH--HHHH
Q ss_conf 12442167775303541014540121211000000102-663298--689982264212473116775123443--3333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG-IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLK--HTER 236 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG-vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLr--hIer 236 (335)
|.+||-++||||||+.+....+- ..+|. +|...... .+..++ ..+.++||+|--+ .+-++ ++..
T Consensus 3 iv~vGd~~VGKTsli~rf~~~~f-~~~y~-pTi~~~~~~~i~v~~~~~~l~i~DTaG~e~---------~~~~~~~~~~~ 71 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDAF-PEEYV-PTVFDHYAVSVTVGGKQYLLGLYDTAGQED---------YDRLRPLSYPM 71 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CEEEEEEEEEEEECCEEEEEEEEECCCCCC---------CHHHHHHHHCC
T ss_conf 99999899859999999962989-98868-857520227999999999999997976403---------15565998557
Q ss_pred HHHHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-------------HHHHHHHHHHHCCC
Q ss_conf 57887520222211013466-67899877766750598899997465899889-------------99999999986299
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDT-------------LARKKNELATQCGQ 302 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-------------~~~~~~~l~~~~~~ 302 (335)
+++++.|.|.++++..+..+ .+..|++.+.+ +.|.++|.||+||.+... ..+.-+++.+..+.
T Consensus 72 a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~---~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~~g~ 148 (174)
T cd04135 72 TDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGA 148 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 87678984379778899999999999998684---998899968523004434554530045766399999999997799
Q ss_pred -CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf -489998887889999999999999
Q gi|254780648|r 303 -VPFEFSSITGHGIPQILECLHDKI 326 (335)
Q Consensus 303 -~vi~ISA~tg~GI~eL~~~I~e~L 326 (335)
..|.+||++++||+++.+.+.+.+
T Consensus 149 ~~f~E~SAkt~~nV~e~F~~~i~~i 173 (174)
T cd04135 149 HCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 8999905487949899999999997
No 166
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.50 E-value=1.1e-13 Score=102.71 Aligned_cols=150 Identities=23% Similarity=0.375 Sum_probs=102.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEE------CCEEEEEECCCCCCCCCCCCCCCHHHHHH---
Q ss_conf 124421677753035410145401212110000001026632------98689982264212473116775123443---
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKE------GYKEFILADIPGIIKNAHQGAGIGDRFLK--- 232 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~------~~~~~~i~D~PGlIegA~~~~glG~~FLr--- 232 (335)
|-+.|-=.-||+|||-+|-+++ |++-++--+.-++|-+.. +...++|.|||| |+ .|-.
T Consensus 275 VTIMGHVDHGKTsLLD~iR~t~--Va~~EaGGITQhIGAy~V~~~~~~~~~~ITFlDTPG-----He------AFt~MRa 341 (770)
T CHL00189 275 VTILGHVDHGKTTLLDAIRKTN--IAQKEAGGITQKIGAYEVEVPYKDQNQKIVFLDTPG-----HE------AFSSMRS 341 (770)
T ss_pred EEEECCCCCCHHHHHHHHHCCC--CCCCCCCCCCCEECEEEEEECCCCCCCEEEEECCCC-----HH------HHHHHHH
T ss_conf 9985772577203788885288--513456765550352999751578897589955994-----68------8999986
Q ss_pred -HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH------CC--CC
Q ss_conf -3333578875202222110134666789987776675059889999746589988999999999986------29--94
Q gi|254780648|r 233 -HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQ------CG--QV 303 (335)
Q Consensus 233 -hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~------~~--~~ 303 (335)
-..-||+.+.||.+.+--..+..+.|.+ ..-++-|.||++||||+++++ ......+|.+. .+ ..
T Consensus 342 RGA~vTDIvILVVAADDGVmPQTiEAI~h------akaA~VPiIVAINKiDkp~an-~~rVk~eL~e~gli~EewGGd~~ 414 (770)
T CHL00189 342 RGANVTDIAILIVAADDGVKPQTIEAINH------IQAANVPIIVAINKIDKENAN-IDRVKQELSKYNLISEKWGGQTP 414 (770)
T ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHH------HHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHCCCCHHHCCCCEE
T ss_conf 27866667999996578856727999999------987699889998774589988-57899999986955222379559
Q ss_pred EEEEECCCCCCHHHHHHHHH--HHHHHHHH
Q ss_conf 89998887889999999999--99985452
Q gi|254780648|r 304 PFEFSSITGHGIPQILECLH--DKIFSIRG 331 (335)
Q Consensus 304 vi~ISA~tg~GI~eL~~~I~--e~L~~~r~ 331 (335)
.++|||++|+|+++|++.|. ..+.+++.
T Consensus 415 ~V~ISAktg~gId~LLE~IlL~AEvlELkA 444 (770)
T CHL00189 415 MIPISALQGTNIDKLLEMILLLAEIENLQA 444 (770)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 999661679887999999999987875236
No 167
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.48 E-value=1.6e-13 Score=101.76 Aligned_cols=149 Identities=23% Similarity=0.392 Sum_probs=103.0
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEE--E-CCEEEEEECCCCCCCCCCCCCCCHHHHHH----HH
Q ss_conf 12442167775303541014540121211000000102663--2-98689982264212473116775123443----33
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVK--E-GYKEFILADIPGIIKNAHQGAGIGDRFLK----HT 234 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~--~-~~~~~~i~D~PGlIegA~~~~glG~~FLr----hI 234 (335)
|.+.|-=.-||+|||-+|-+++ |++...--+.-|+|-+. . ++..++|.|||| |+ .|.. -.
T Consensus 344 vt~mghvdhgkt~lld~~r~~~--v~~~e~ggitq~iga~~v~~~~~~~itf~dtpg-----h~------af~~mr~rga 410 (839)
T PRK05306 344 VTIMGHVDHGKTSLLDAIRKTK--VAAGEAGGITQHIGAYQVETENGKKITFLDTPG-----HE------AFTAMRARGA 410 (839)
T ss_pred EEEECCCCCCHHHHHHHHHCCC--CCCCCCCCCCCEEEEEEEEECCCCEEEEECCCC-----HH------HHHHHHHCCC
T ss_conf 9885774677314899986287--535567875522234999956998799855885-----58------8999986357
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC------C--CCEEE
Q ss_conf 335788752022221101346667899877766750598899997465899889999999999862------9--94899
Q gi|254780648|r 235 ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQC------G--QVPFE 306 (335)
Q Consensus 235 er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~------~--~~vi~ 306 (335)
.=||+.+.||.+.+--.-+..+.|.+ ..-+.-|.||++||||++.++ ......+|.+.. + ...++
T Consensus 411 ~~tdi~ilvvaaddgv~pqt~eai~~------~~~a~vp~ivaink~d~~~a~-~~~v~~~l~~~~~~~e~~gg~~~~v~ 483 (839)
T PRK05306 411 QVTDIVVLVVAADDGVMPQTIEAINH------AKAAGVPIIVAINKIDKPGAN-PDRVKQELTEYGLVPEEWGGDTIFVP 483 (839)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHH------HHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHCCCCHHHCCCCEEEEE
T ss_conf 65436999997777756778999999------997499889997404678898-89999999984986454289448998
Q ss_pred EECCCCCCHHHHHHHHH--HHHHHHH
Q ss_conf 98887889999999999--9998545
Q gi|254780648|r 307 FSSITGHGIPQILECLH--DKIFSIR 330 (335)
Q Consensus 307 ISA~tg~GI~eL~~~I~--e~L~~~r 330 (335)
|||++|+||++|++.|. ..+.+++
T Consensus 484 ~sa~~~~~~~~l~e~i~l~ae~~~l~ 509 (839)
T PRK05306 484 VSAKTGEGIDELLEAILLQAEVLELK 509 (839)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 15157887899999999876652044
No 168
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.48 E-value=6.2e-14 Score=104.29 Aligned_cols=151 Identities=13% Similarity=0.130 Sum_probs=102.4
Q ss_pred EEEEECCCCCCCEEEEEECCC------CCHHHHHHHCCCEECCEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 124421677753035410145------40121211000000102663298--6899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRA------KPKIADYPFTTLYPNLGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~a------k~kIa~ypFTT~~P~lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|.++|-++||||||+++.+.- .|.|++ |.+ -.+..++ ..+.|+||+|-- +-..+-.. .
T Consensus 3 IvvlGdsgVGKTSLi~Rf~~~~F~~~y~pTi~d--~~~-----k~i~i~g~~v~L~IwDTaGqe----~f~sl~~~---y 68 (247)
T cd04143 3 MVVLGASKVGKTAIVSRFLGGRFEEQYTPTIED--FHR-----KLYSIRGEVYQLDILDTSGNH----PFPAMRRL---S 68 (247)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCHHH--EEE-----EEEEECCEEEEEEEEECCCCC----CCCCCHHH---H
T ss_conf 999998997899999999649689987888353--188-----999999999999999676653----68744201---3
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-------HHHCCCCEEEEEECCCCCCHHHHH-HHHHHH-HHHCCCCE
Q ss_conf 333578875202222110134666789987776-------675059889999746589988999-999999-98629948
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYN-------SELRKKIEIVGLSQIDTVDSDTLA-RKKNEL-ATQCGQVP 304 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~-------~~L~~Kp~IIVlNKiDl~~~e~~~-~~~~~l-~~~~~~~v 304 (335)
+..+++.+.|.|+++.+..+.++.+.+|+.... ....+-|.++|-||+||.+..+.. +...++ .+..+...
T Consensus 69 ~~~a~~~IlVYDITnr~SFe~v~~w~~~I~e~k~~~~~~~~~~~~vpiiLVGNK~DL~~~R~Vs~eEa~~~~A~~~~~~f 148 (247)
T cd04143 69 ILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAY 148 (247)
T ss_pred HHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHHCCCEE
T ss_conf 12177899999799878999899999999986400100135788875899866554320178799999999997689879
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998887889999999999999
Q gi|254780648|r 305 FEFSSITGHGIPQILECLHDKI 326 (335)
Q Consensus 305 i~ISA~tg~GI~eL~~~I~e~L 326 (335)
|.+||++++||+|+...|....
T Consensus 149 ~EtSAKt~~NV~E~F~~L~~~~ 170 (247)
T cd04143 149 FEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EECCCCCCCCHHHHHHHHHHHC
T ss_conf 9887899949899999999854
No 169
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.47 E-value=2e-13 Score=101.27 Aligned_cols=154 Identities=19% Similarity=0.264 Sum_probs=96.2
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHH---HCCCE-----------------------E---CCEEEEECCEEEEE
Q ss_conf 0112442167775303541014540121211---00000-----------------------0---10266329868998
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYP---FTTLY-----------------------P---NLGIVKEGYKEFIL 210 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~yp---FTT~~-----------------------P---~lGvv~~~~~~~~i 210 (335)
-.||.+|-=..|||||+.+||...+.-..-+ .-|.. | ..+......+.+.+
T Consensus 9 vNIgtiGHVDHGKTTLv~aLTg~~tdr~~eE~~RGiTI~LG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~is~ 88 (410)
T PRK04000 9 VNIGMVGHVDHGKTTLVQALTGVWTDTHSEELKRGITIRLGYADATIYKCPNCEGPEAYTTEPTCPKCGSETELLRRVSF 88 (410)
T ss_pred CEEEEEEEECCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCEEHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEE
T ss_conf 26999965178699999887397542388788648812105101001205455544413530233444555443316999
Q ss_pred ECCCCCCCCCCCCCCCHHHHHHHHH----HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH
Q ss_conf 2264212473116775123443333----357887520222211013466678998777667505988999974658998
Q gi|254780648|r 211 ADIPGIIKNAHQGAGIGDRFLKHTE----RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS 286 (335)
Q Consensus 211 ~D~PGlIegA~~~~glG~~FLrhIe----r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~ 286 (335)
+|.|| |+ +|++..- -.|..+.|||+.+.-|..|- ++.|... ..|.-++.+|++||+|++++
T Consensus 89 VD~PG-----He------~fi~nMi~Gas~~D~alLVVaA~eG~p~pQT---~EHl~i~-~~lgi~~~iV~lnK~Dlv~~ 153 (410)
T PRK04000 89 VDAPG-----HE------TLMATMLSGAALMDGAVLVIAANEPCPQPQT---KEHLMAL-DIIGIKNIVIVQNKIDLVSK 153 (410)
T ss_pred EECCC-----HH------HHHHHHHHHHCCCCEEEEEEECCCCCCCCCH---HHHHHHH-HHCCCCCEEEEEECCCCCCH
T ss_conf 97988-----79------9999998402126679999865778767714---9999999-98099837999962567898
Q ss_pred HHHHHHHHHHHHHC------CCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 89999999999862------9948999888788999999999999985
Q gi|254780648|r 287 DTLARKKNELATQC------GQVPFEFSSITGHGIPQILECLHDKIFS 328 (335)
Q Consensus 287 e~~~~~~~~l~~~~------~~~vi~ISA~tg~GI~eL~~~I~e~L~~ 328 (335)
+...+..+++.+.. +.+++|+||.++.|++.|++.|.+.+..
T Consensus 154 e~~~~~~~ei~~~l~g~~~~~~piipvSa~~g~~i~~L~~~l~~~~~~ 201 (410)
T PRK04000 154 EKALENYEQIKEFVKGTVAENAPIIPVSALHGVNIDALIEAIEEEIPT 201 (410)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 999999999999870676568999996477788940899989862778
No 170
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.46 E-value=2.4e-13 Score=100.75 Aligned_cols=150 Identities=19% Similarity=0.152 Sum_probs=98.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010-2663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
|.+||-++||||||+.+....+- ..+|.=| ..... -.+..++ ..+.|+|++|--+ -..+-.. +...++
T Consensus 3 vvlvGd~~VGKTsli~r~~~~~F-~~~y~pT-~~~~~~~~i~~~~~~v~l~iwDtaG~e~----~~~l~~~---~~~~a~ 73 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYTTNGY-PTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDE----FDKLRPL---CYPDTD 73 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCCC-EEEEEEEEEEECCEEEEEEEEECCCCCC----CCHHHHH---HHCCCC
T ss_conf 99999899788999999961999-9985783-5899999999999999999998998734----4345676---613787
Q ss_pred HHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-------------HHHHHHHHHHHCC-CC
Q ss_conf 887520222211013466-67899877766750598899997465899889-------------9999999998629-94
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDT-------------LARKKNELATQCG-QV 303 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-------------~~~~~~~l~~~~~-~~ 303 (335)
+++.|.|+++++..+.+. .+..|++.+.+ +-|.++|.||+||.+... ..+..+++.+..+ ..
T Consensus 74 ~~ilvydv~~~~Sf~~l~~~w~~~i~~~~~---~~piilvGnK~DL~~~~~~~~~~~~~~~r~Vs~~e~~~~a~~~~~~~ 150 (173)
T cd04130 74 VFLLCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE 150 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCC---CCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 899999659878899999999999996098---99889998870110013355444332575578999999999849968
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998887889999999999
Q gi|254780648|r 304 PFEFSSITGHGIPQILECLH 323 (335)
Q Consensus 304 vi~ISA~tg~GI~eL~~~I~ 323 (335)
.|.+||++++||+++.+.+.
T Consensus 151 y~EtSAkt~~nV~e~Fe~~i 170 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 99968688969799999998
No 171
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.46 E-value=3e-13 Score=100.18 Aligned_cols=152 Identities=15% Similarity=0.131 Sum_probs=101.4
Q ss_pred EEEEECCCCCCCEEEEEECCCC------CHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHH--H
Q ss_conf 1244216777530354101454------0121211000000102663298689982264212473116775123443--3
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAK------PKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLK--H 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak------~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLr--h 233 (335)
|-+||-+.||||||+.+..+.+ |.|.+ .|++.. .+......+.|+||+|--+ .+-++ .
T Consensus 6 ivlvGd~~VGKTsli~r~~~~~F~~~y~pti~~-~~~~~~----~i~~~~v~l~iwDtaG~e~---------~~~~~~~~ 71 (191)
T cd01875 6 CVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFD-NYSAQT----AVDGRTVSLNLWDTAGQEE---------YDRLRTLS 71 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCE-EEEEEE----EECCEEEEEEEEECCCCCC---------HHHHHHHH
T ss_conf 999999998999999999729999864662100-046789----9999999999985888700---------35677877
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH-------------HHHHHHHHH
Q ss_conf 33357887520222211013466-6789987776675059889999746589988999-------------999999986
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDTLA-------------RKKNELATQ 299 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~-------------~~~~~l~~~ 299 (335)
...+++++.|.|.++....+... .+..|+..+.+ +-|.++|.||+||.+..... +.-..+.+.
T Consensus 72 ~~~a~~~ilvfdvt~~~Sf~~v~~~w~~ei~~~~~---~~piiLvGnK~DL~~~~~~~~~~~e~~~~~vs~eeg~~~a~~ 148 (191)
T cd01875 72 YPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP---NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQ 148 (191)
T ss_pred HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 44786899998579778899999999999997096---997899988801023457788877641375569999999998
Q ss_pred CC-CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 29-94899988878899999999999998545
Q gi|254780648|r 300 CG-QVPFEFSSITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 300 ~~-~~vi~ISA~tg~GI~eL~~~I~e~L~~~r 330 (335)
.+ ...|.+||++++||+++.+.+.+.+....
T Consensus 149 ~~~~~y~EtSAkt~~nV~e~F~~l~k~il~~~ 180 (191)
T cd01875 149 IHAVKYLECSALNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 09988999068989698999999999980789
No 172
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.45 E-value=4.7e-13 Score=98.98 Aligned_cols=152 Identities=20% Similarity=0.161 Sum_probs=99.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE-EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102-663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG-IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG-vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
|.+||-+.||||||+.+.+..+- ..+|.= |...... .+..++ ..+.|+|++|--+ -..+-.. ++..++
T Consensus 4 vv~lGd~~VGKTsli~r~~~~~f-~~~y~p-ti~~~~~~~~~~~~~~v~l~iwDTaG~e~----~~~l~~~---~~~~~~ 74 (175)
T cd01874 4 CVVVGDGAVGKTCLLISYTTNKF-PSEYVP-TVFDNYAVTVMIGGEPYTLGLFDTAGQED----YDRLRPL---SYPQTD 74 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCC-CEEEEEEEEEEECCEEEEEEEEECCCCCC----CHHHHHH---HHHCCC
T ss_conf 99989999588999999964989-998678-63478999999999999999998999745----1246588---771388
Q ss_pred HHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-------------HHHHHHHHHHCCC-C
Q ss_conf 887520222211013466-678998777667505988999974658998899-------------9999999986299-4
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-------------ARKKNELATQCGQ-V 303 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-------------~~~~~~l~~~~~~-~ 303 (335)
+.+.|.|+++++..+... .+..|+..+.+ +-|.++|.||+||.+.... .+.-+++.+..+. .
T Consensus 75 ~~ilvydv~d~~Sf~~i~~~w~~~i~~~~~---~~p~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg~~lA~~~~~~~ 151 (175)
T cd01874 75 VFLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVK 151 (175)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 889996379878899999999999998298---99889999872033566667776440265668999999999759959
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8999888788999999999999
Q gi|254780648|r 304 PFEFSSITGHGIPQILECLHDK 325 (335)
Q Consensus 304 vi~ISA~tg~GI~eL~~~I~e~ 325 (335)
.|.+||++++||+++.+.+...
T Consensus 152 y~EtSAk~g~nV~e~F~~~i~~ 173 (175)
T cd01874 152 YVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred EEECCCCCCCCHHHHHHHHHHH
T ss_conf 9991337895979999999998
No 173
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.45 E-value=3.6e-13 Score=99.70 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=97.5
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHH-HH--HHHCCCEECCEEEE---ECCEEEEEECCCCCCCCCCCCCCCHHHHHHHH-
Q ss_conf 1244216777530354101454012-12--11000000102663---29868998226421247311677512344333-
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKI-AD--YPFTTLYPNLGIVK---EGYKEFILADIPGIIKNAHQGAGIGDRFLKHT- 234 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kI-a~--ypFTT~~P~lGvv~---~~~~~~~i~D~PGlIegA~~~~glG~~FLrhI- 234 (335)
||--|-=--|||||+.|||+-.+-= .. --.-|++ +|-.. .++..+-|+|+|| || +|+|..
T Consensus 3 igTAGHVDHGKTsLvkALTG~dtDRL~EEk~RGiTId--LGFA~~~l~~g~~~g~VDVPG-----HE------rFIknMl 69 (615)
T PRK10512 3 IATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTID--LGYAYWPQPDGRVLGFIDVPG-----HE------KFLSNML 69 (615)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHCCEEE--ECEEEEECCCCCEEEEEECCC-----HH------HHHHHHH
T ss_conf 9963654778999999986888656977897187277--130755579997899987998-----38------9999997
Q ss_pred ---HHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC------CC
Q ss_conf ---335788752022221---101346667899877766750598899997465899889999999999862------99
Q gi|254780648|r 235 ---ERTHVLLHIVSALEE---NVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQC------GQ 302 (335)
Q Consensus 235 ---er~~vLl~VVD~s~~---d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~------~~ 302 (335)
--.++.+.||++.+- ...|.++++. -|.=+..+||+||+|+++++.++....++.+.. +.
T Consensus 70 AG~~gid~vlLVVAAdeGvMPQT~EHl~Il~--------lLgi~~giV~lTK~Dlvd~e~l~~v~~ei~~~l~~t~l~~~ 141 (615)
T PRK10512 70 AGVGGIDHALLVVACDDGVMAQTREHLAILQ--------LTGNPMLTVALTKADRVDEARIDEVRRQVLEVLREYGFAEA 141 (615)
T ss_pred HHHHHCCEEEEEEECCCCCCCCHHHHHHHHH--------HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 4464378899999889987723799999999--------81998289999776568979999999999999844787679
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 48999888788999999999999985452
Q gi|254780648|r 303 VPFEFSSITGHGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 303 ~vi~ISA~tg~GI~eL~~~I~e~L~~~r~ 331 (335)
+++++||.+|+|+++|++.|.+...+.+.
T Consensus 142 pi~~vSa~tg~Gi~~L~~~L~~l~~~~~~ 170 (615)
T PRK10512 142 KLFVTAATEGRGIDALREHLLQLPEREHA 170 (615)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 75201456667999999999862556667
No 174
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.45 E-value=8e-13 Score=97.58 Aligned_cols=145 Identities=22% Similarity=0.308 Sum_probs=90.6
Q ss_pred EEEEECCCCCCCEEEEEECCCC---------CH---------------HHH--HHHCCC----EEC--------CEEEEE
Q ss_conf 1244216777530354101454---------01---------------212--110000----001--------026632
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAK---------PK---------------IAD--YPFTTL----YPN--------LGIVKE 203 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak---------~k---------------Ia~--ypFTT~----~P~--------lGvv~~ 203 (335)
|+++|--.+|||||+-+||... .. |+. ..|... ... .-+...
T Consensus 2 v~v~GhVD~GKSTL~G~Lt~g~lDdGrg~ar~~~~rh~hE~~~G~Tssi~~~~lgf~~~g~~~~~~~~~~~~~~~~~~~~ 81 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEK 81 (224)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCCCCEEEECC
T ss_conf 89994858848899999856774222106777877618999726544115655401014532021347654422012136
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH------HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9868998226421247311677512344333335------7887520222211013466678998777667505988999
Q gi|254780648|r 204 GYKEFILADIPGIIKNAHQGAGIGDRFLKHTERT------HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVG 277 (335)
Q Consensus 204 ~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~------~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIV 277 (335)
..+.++|+|+|| | .+|+|..-+- +..+.||++.+... ...++.|.. ...++-|.+||
T Consensus 82 ~~k~it~iD~pG-----H------~~y~kt~i~G~~~~~~d~~~LvV~A~~G~~----~~T~ehl~l--~~~l~ip~~vv 144 (224)
T cd04165 82 SSKLVTFIDLAG-----H------ERYLKTTLFGLTGYAPDYAMLVVAANAGII----GMTKEHLGL--ALALNIPVFVV 144 (224)
T ss_pred CCCEEEEEECCC-----H------HHHHHHHHHHHHCCCCCEEEEEEECCCCCH----HHHHHHHHH--HHHHCCCEEEE
T ss_conf 786799997887-----3------999999998763556898999931788977----999999999--99839998999
Q ss_pred EECCCCCCHHHHHHHHHHHHHHC-----------------------------CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97465899889999999999862-----------------------------99489998887889999999999
Q gi|254780648|r 278 LSQIDTVDSDTLARKKNELATQC-----------------------------GQVPFEFSSITGHGIPQILECLH 323 (335)
Q Consensus 278 lNKiDl~~~e~~~~~~~~l~~~~-----------------------------~~~vi~ISA~tg~GI~eL~~~I~ 323 (335)
+||+|+++++.+.+...++.+.. -.|+|.+|+++|+|++.|...|.
T Consensus 145 itKiDl~~~~~l~~~~~~i~~~lk~p~~~k~p~~v~~~~d~~~~a~~~~~~~ivPIf~vS~VtG~Gi~~L~~fL~ 219 (224)
T cd04165 145 VTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 989776898999999999999970447556870216858899998648867774679976589879999999998
No 175
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.44 E-value=2.8e-13 Score=100.30 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=101.8
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298--6899822642124731167751234433333578
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
|.|+|-++||||+|+++....+- +.+|+ ||..-.--.+..++ ..+.++|++|-.+ .+|+ ..++.
T Consensus 3 ivllGd~~VGKTsl~~Rf~~~~F-~~~~~-pt~~~~~~~~~vdg~~~~l~i~DTaG~~~---------~~~~---~~ada 68 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYLTGSY-VQLES-PEGGRFKKEVLVDGQSHLLLIRDEGGAPD---------AQFA---SWVDA 68 (158)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCEEEEEEEECCEEEEEEEEECCCCCC---------HHHH---CCCCE
T ss_conf 99999699879999999980947-87444-66441799999999999999995899834---------3332---14998
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH---HHHHHHHHHHHC-CCCEEEEECCCCCCH
Q ss_conf 8752022221101346667899877766750598899997465899889---999999999862-994899988878899
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT---LARKKNELATQC-GQVPFEFSSITGHGI 315 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~---~~~~~~~l~~~~-~~~vi~ISA~tg~GI 315 (335)
++.|.|+++++..+..+.+.+|+..+. .....|.++|.||.|+...+. ..+..+++.+.. +.+.|.+||+++.||
T Consensus 69 ~ilVydit~~~SF~~v~~~~~~i~~~~-~~~~ipiilvGnK~dl~~~~~r~V~~~e~~~~a~~~~~~~f~EtSAk~~~NV 147 (158)
T cd04103 69 VIFVFSLENEASFQTVYNLYHQLSSYR-NISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNV 147 (158)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHCCCCEEEEEECCCCCCH
T ss_conf 999998898889999999999999855-9789968999877003657761479999999998569988999017999598
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780648|r 316 PQILECLHDKI 326 (335)
Q Consensus 316 ~eL~~~I~e~L 326 (335)
+++.+.+.+.+
T Consensus 148 ~~~F~~~~~~i 158 (158)
T cd04103 148 ERVFQEAAQKI 158 (158)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999639
No 176
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.43 E-value=7.7e-13 Score=97.68 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=101.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHH--HHHHH
Q ss_conf 124421677753035410145401212110000001026632986--89982264212473116775123443--33335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLK--HTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLr--hIer~ 237 (335)
|-+||-++||||||+.+.+...-. .+|.-|......-.+..++. .+.|+||+|--+ .+-|+ +...+
T Consensus 4 ivlvGd~~VGKTsLi~r~~~~~F~-~~y~pTi~~~~~~~~~v~~~~v~l~iwDTaGqe~---------~~~l~~~~y~~a 73 (178)
T cd04131 4 IVVVGDVQCGKTALLQVFAKDCYP-ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPY---------YDNVRPLCYPDS 73 (178)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHH---------HCCHHHHHHCCC
T ss_conf 999999997789999999639999-9857856888899999999999999996898742---------110366773468
Q ss_pred HHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-------------HHHHHHHHHHHCCCC
Q ss_conf 788752022221101346-667899877766750598899997465899889-------------999999999862994
Q gi|254780648|r 238 HVLLHIVSALEENVQAAY-QCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-------------LARKKNELATQCGQV 303 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~-~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-------------~~~~~~~l~~~~~~~ 303 (335)
++++.|.|+++++..+.. ..+..|+..+.+ +-|.++|.||+||.++.. ..+.-..+.+..+..
T Consensus 74 ~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~---~~~iiLVGnK~DLr~~~~~~~~~~~~~~~~Vs~eeg~~~A~~~ga~ 150 (178)
T cd04131 74 DAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAE 150 (178)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
T ss_conf 7899997379878899999999999998687---9988999985436644455667764467776899999999974998
Q ss_pred -EEEEECCCCC-CHHHHHHHHHHHHH
Q ss_conf -8999888788-99999999999998
Q gi|254780648|r 304 -PFEFSSITGH-GIPQILECLHDKIF 327 (335)
Q Consensus 304 -vi~ISA~tg~-GI~eL~~~I~e~L~ 327 (335)
.+.+||++++ ||+++.+.+.+...
T Consensus 151 ~y~EtSAktg~ngV~evF~~a~~~~l 176 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99997848687398999999999984
No 177
>KOG0075 consensus
Probab=99.43 E-value=1.6e-12 Score=95.72 Aligned_cols=157 Identities=19% Similarity=0.224 Sum_probs=105.2
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298689982264212473116775123443333357887
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
+.|||+-|+|||||.|.+.+.. -..|-.-|.--++--++.+...+.+.|+||--. =+.+-.+| -..+++|+
T Consensus 23 l~lvGLq~sGKtt~Vnvia~g~--~~edmiptvGfnmrkvtkgnvtik~wD~gGq~r----frsmWery---cR~v~aiv 93 (186)
T KOG0075 23 LSLVGLQNSGKTTLVNVIARGQ--YLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR----FRSMWERY---CRGVSAIV 93 (186)
T ss_pred EEEEEECCCCCCEEEEEEECCC--CHHHHCCCCCCEEEEECCCCEEEEEEECCCCCC----HHHHHHHH---HCCCCEEE
T ss_conf 8888532478525888875067--456643024632688315836999983699760----88899998---60386899
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH--HHCCCC--EEEEECCCCCCH
Q ss_conf 520222211013466678998777--66750598899997465899889999999999--862994--899988878899
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAY--NSELRKKIEIVGLSQIDTVDSDTLARKKNELA--TQCGQV--PFEFSSITGHGI 315 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y--~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~--~~~~~~--vi~ISA~tg~GI 315 (335)
|+||+++++- +..-++||+.. .+.+...|.++.-||.|++++-....++.++- ...+.+ .|.|||+...|+
T Consensus 94 Y~VDaad~~k---~~~sR~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075 94 YVVDAADPDK---LEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred EEEECCCCCC---CHHHHHHHHHHHCCHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEEECCCCCH
T ss_conf 9961678653---4312999998850321148717996255667553227899998384524464578999987687568
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999998545
Q gi|254780648|r 316 PQILECLHDKIFSIR 330 (335)
Q Consensus 316 ~eL~~~I~e~L~~~r 330 (335)
|.+.++|.+.-...+
T Consensus 171 d~~~~Wli~hsk~~~ 185 (186)
T KOG0075 171 DITLDWLIEHSKSLR 185 (186)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999767513
No 178
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.43 E-value=1.1e-12 Score=96.61 Aligned_cols=143 Identities=22% Similarity=0.333 Sum_probs=88.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEEC--------------------CEEEEEECCCCCCCCCC
Q ss_conf 1244216777530354101454012121100000010266329--------------------86899822642124731
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEG--------------------YKEFILADIPGIIKNAH 221 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~--------------------~~~~~i~D~PGlIegA~ 221 (335)
|.+.|-=-.||+|||-+|-+++ |+.-+.--..-|+|-.... --.++|.|||| |
T Consensus 8 vtimGHVDhGKTsLLD~iR~t~--V~~~EaGGITQhIGA~~v~~~~~~~~~~~~~~~~~~~~~ipgllfiDTPG-----H 80 (592)
T PRK04004 8 VVVLGHVDHGKTTLLDKIRGTA--VAAKEAGGITQHIGATEVPIDVIEKIAGPLVKRLPLKLKIPGLLFIDTPG-----H 80 (592)
T ss_pred EEEECCCCCCHHHHHHHHHCCC--CCCCCCCCCCCEECEEEECCCCHHHHCCCCCCCCCCCCCCCCCEEECCCC-----H
T ss_conf 9997873777636899986287--73555776232306598412310110344334433234567755765996-----5
Q ss_pred CCCCCHHHH--HHH--HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC------------
Q ss_conf 167751234--433--3335788752022221101346667899877766750598899997465899------------
Q gi|254780648|r 222 QGAGIGDRF--LKH--TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVD------------ 285 (335)
Q Consensus 222 ~~~glG~~F--Lrh--Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~------------ 285 (335)
+ .| ||. -.=||+.+.|||+.+----+.++.|.. ++. .+-|.||++||||.+.
T Consensus 81 e------aFt~mR~RGa~vtDiaILVVa~~dGv~pQT~EaI~~-~k~-----~~vP~IVAiNKiDr~~gw~~~~~~~~~~ 148 (592)
T PRK04004 81 E------AFSNLRKRGGALADIAILVVDINEGFQPQTIESLNI-LKS-----RKTPFVVAANKIDRIPGWKSVEGAPFLE 148 (592)
T ss_pred H------HHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHH-HHH-----CCCCEEEEEECCCCCCCCCCCCCCCHHH
T ss_conf 9------999999736745788999997788867627999999-997-----5998899986223566677676741123
Q ss_pred ------H---HHHH----HHHHHHHHHC----------C----CCEEEEECCCCCCHHHHHHHHH
Q ss_conf ------8---8999----9999999862----------9----9489998887889999999999
Q gi|254780648|r 286 ------S---DTLA----RKKNELATQC----------G----QVPFEFSSITGHGIPQILECLH 323 (335)
Q Consensus 286 ------~---e~~~----~~~~~l~~~~----------~----~~vi~ISA~tg~GI~eL~~~I~ 323 (335)
+ .++. +...+|.+.. + ..++|+||++|+||++|++.|.
T Consensus 149 ~~~~q~~~v~~~l~~~~~~vi~~l~e~G~~~e~~~~~~d~g~~v~~VpvSA~tGeGi~dLL~~i~ 213 (592)
T PRK04004 149 SFKKQSERVQAELEEKLYELIGELYELGFSADRFDRVSDFTKTVAIVPVSAKTGEGIPDLLMVLA 213 (592)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 22317388999998888888899987287632214543458814899782056899899999999
No 179
>KOG0076 consensus
Probab=99.40 E-value=3.7e-13 Score=99.59 Aligned_cols=156 Identities=20% Similarity=0.212 Sum_probs=113.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHH---H--HHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHH--
Q ss_conf 1244216777530354101454012---1--21100000010266329868998226421247311677512344333--
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKI---A--DYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHT-- 234 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kI---a--~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhI-- 234 (335)
|-|+|+-||||+|||-+.-....+. . +---+|.--|.|.+......+.++|+-|= +-||.|
T Consensus 20 vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQ------------e~lrSlw~ 87 (197)
T KOG0076 20 VLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQ------------ESLRSLWK 87 (197)
T ss_pred HEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHEECCCCEEECCEEECCCEEEEEECCCH------------HHHHHHHH
T ss_conf 002424457852089887778876516888888101224031316412541677886780------------87899999
Q ss_pred ---HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH--HHC---CCCEEE
Q ss_conf ---335788752022221101346667899877766750598899997465899889999999999--862---994899
Q gi|254780648|r 235 ---ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELA--TQC---GQVPFE 306 (335)
Q Consensus 235 ---er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~--~~~---~~~vi~ 306 (335)
..|.+++||||+++++-.+.-.+..+++.. ++.+..-|.++.+||.|+.+..+..++...+. +.. ..++.|
T Consensus 88 ~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~-~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~p 166 (197)
T KOG0076 88 KYYWLAHGIIYVIDATDRERFEESKTAFEKVVE-NEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQP 166 (197)
T ss_pred HHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHH-HHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999972634776417777888887999999998-7876287154340043303056689898774266536886576442
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 988878899999999999998545
Q gi|254780648|r 307 FSSITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 307 ISA~tg~GI~eL~~~I~e~L~~~r 330 (335)
|||++|+|+++-++++.+.+.+.+
T Consensus 167 vSal~gegv~egi~w~v~~~~kn~ 190 (197)
T KOG0076 167 VSALTGEGVKEGIEWLVKKLEKNV 190 (197)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 145405567788999999986236
No 180
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.40 E-value=4e-13 Score=99.36 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=98.1
Q ss_pred EEEEECCCCCCCEEEE-EECCCCCHHHHHHHC-CCEECCEEE---------------EECC--EEEEEECCCCCCCCCCC
Q ss_conf 1244216777530354-101454012121100-000010266---------------3298--68998226421247311
Q gi|254780648|r 162 IGIIGLPNAGKSTFLA-SVTRAKPKIADYPFT-TLYPNLGIV---------------KEGY--KEFILADIPGIIKNAHQ 222 (335)
Q Consensus 162 VglVG~PNaGKSTLln-~ls~ak~kIa~ypFT-T~~P~lGvv---------------~~~~--~~~~i~D~PGlIegA~~ 222 (335)
|=+||=++|||||||. ..++..+ -+|.|| +-.|+++.+ ..++ ..+.++||+|= +
T Consensus 5 iVlvGDs~VGKTsLl~~~~~n~~~--~~~~~~~~~~pTv~~~~~~~~~~~~~~~~~~~vdg~~v~L~iWDTAG~-----~ 77 (195)
T cd01873 5 CVVVGDNAVGKTRLICARACNKTL--TQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGD-----H 77 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCEEEEEEEEECCCC-----H
T ss_conf 999878998989999778747876--556566675886633333134444302211421895999999978996-----2
Q ss_pred CCCCHHHHHHH--HHHHHHHHHHCCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCCCH--HH---------
Q ss_conf 67751234433--333578875202222110134666-78998777667505988999974658998--89---------
Q gi|254780648|r 223 GAGIGDRFLKH--TERTHVLLHIVSALEENVQAAYQC-ILDELSAYNSELRKKIEIVGLSQIDTVDS--DT--------- 288 (335)
Q Consensus 223 ~~glG~~FLrh--Ier~~vLl~VVD~s~~d~~~~~~~-I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~--e~--------- 288 (335)
+++|. -.++++.+.+.|+++++..+.... +..|++.+.+ +-|.++|-||+||-+. +.
T Consensus 78 ------~~~r~~~y~~~~~~ll~fdv~~~~Sf~~v~~~W~~ei~~~~~---~~piiLVG~K~DLr~~~~~~~~~~~~~~~ 148 (195)
T cd01873 78 ------DKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP---RVPVILVGCKLDLRYADLDEVNRARRPLA 148 (195)
T ss_pred ------HHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECHHHCCCCCHHHHHHHHCCC
T ss_conf ------001214356888999999669801489999999999998689---99889996375754463024555430013
Q ss_pred ---------HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf ---------999999999862994899988878899999999999
Q gi|254780648|r 289 ---------LARKKNELATQCGQVPFEFSSITGHGIPQILECLHD 324 (335)
Q Consensus 289 ---------~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e 324 (335)
..+.-+.+.+..+...+.+||++++||+++.+.+.+
T Consensus 149 ~~~~~~~~v~~ee~~~~A~~~g~~y~EtSAkt~~gV~e~F~~air 193 (195)
T cd01873 149 RPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 655435767899999999982998998284879897999999998
No 181
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.39 E-value=1.1e-12 Score=96.63 Aligned_cols=151 Identities=25% Similarity=0.321 Sum_probs=96.4
Q ss_pred CEEEEECCCCCCCEEEEEE---CCCCCH---H------HHHH------HCCCEECCEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 1124421677753035410---145401---2------1211------00000010266329868998226421247311
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASV---TRAKPK---I------ADYP------FTTLYPNLGIVKEGYKEFILADIPGIIKNAHQ 222 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~l---s~ak~k---I------a~yp------FTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~ 222 (335)
.|||+|-..+|||||.-+| |++-.+ | .||. .-|+...+..+.+++.+|.++|+||-.
T Consensus 1 Niai~gH~~~GKTtL~e~lL~~~g~i~r~G~v~~g~t~~D~~~eE~~r~isi~~~~~~~~~~~~~~n~iDtPG~~----- 75 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHM----- 75 (237)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCHHHHCCCEECCCCCCCCHHHHHHHCCEEEEEEEEEEECCEEEEEEECCCCH-----
T ss_conf 989993899899999999999657122266330683037854998984870310589999899879998898846-----
Q ss_pred CCCCHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH--H-HHHHHHH
Q ss_conf 67751234433333----578875202222110134666789987776675059889999746589988--9-9999999
Q gi|254780648|r 223 GAGIGDRFLKHTER----THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD--T-LARKKNE 295 (335)
Q Consensus 223 ~~glG~~FLrhIer----~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e--~-~~~~~~~ 295 (335)
+|....++ ++..+.|||+.+. +..+-+.+.+.++. .+.|+++++||+|....+ . +.++...
T Consensus 76 ------dF~~e~~~al~~~D~av~Vv~a~~G-v~~~t~~~~~~~~~-----~~~P~iifiNKmDre~adf~~~l~~i~~~ 143 (237)
T cd04168 76 ------DFIAEVERSLSVLDGAILVISAVEG-VQAQTRILWRLLRK-----LNIPTIIFVNKIDRAGADLEKVYQEIKEK 143 (237)
T ss_pred ------HHHHHHHHHHHHCCCEEEEEECCCC-CCCCHHHHHHHHHH-----CCCCEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf ------5666898897634816999965888-22344999999998-----59985998624457899999999999999
Q ss_pred H-------------------------------------HH-HC-------------------C---CCEEEEECCCCCCH
Q ss_conf 9-------------------------------------98-62-------------------9---94899988878899
Q gi|254780648|r 296 L-------------------------------------AT-QC-------------------G---QVPFEFSSITGHGI 315 (335)
Q Consensus 296 l-------------------------------------~~-~~-------------------~---~~vi~ISA~tg~GI 315 (335)
+ .+ .+ . .|||+-||.++.|+
T Consensus 144 l~~~~~p~~~p~~~~~~~~~~~~~~~liE~vae~DD~LlEkyLe~~elt~eel~~~L~~~~~~g~i~PV~~GSA~~n~GV 223 (237)
T cd04168 144 LSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGI 223 (237)
T ss_pred HCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCH
T ss_conf 78974767777555664445441088999876469999998857898678899999999997492988996789989599
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999985
Q gi|254780648|r 316 PQILECLHDKIFS 328 (335)
Q Consensus 316 ~eL~~~I~e~L~~ 328 (335)
.+|++.|.+.+.+
T Consensus 224 ~~LLd~i~~~~PS 236 (237)
T cd04168 224 EELLEGITKLFPT 236 (237)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999987789
No 182
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.39 E-value=9.7e-13 Score=97.07 Aligned_cols=154 Identities=20% Similarity=0.203 Sum_probs=96.7
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHH---------------HHHHH------------CC---------CEECCEEEEE
Q ss_conf 011244216777530354101454012---------------12110------------00---------0001026632
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKI---------------ADYPF------------TT---------LYPNLGIVKE 203 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kI---------------a~ypF------------TT---------~~P~lGvv~~ 203 (335)
-.||.+|-=.-|||||..|||...+.- |++.+ .+ .-|+.|....
T Consensus 38 vNIGtiGHVDHGKTTLvkALTgv~t~r~~eE~~RgiTI~LGya~~kiykc~~~~~p~~y~~~~s~~~~~~~c~~c~~~~t 117 (460)
T PTZ00327 38 INIGTIGHVAHGKSTVVKALSGVKTVRFHREKVRNITIKLGYANAKIYKCTKCPPPACYKSYPSSKPDNPQCPGCGHKMT 117 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCHHHCHHHHHCCCEEEECCCCEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
T ss_conf 18988746289899999998677501065678758721205433011136567763101014666655544555565431
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9868998226421247311677512344333----335788752022221101346667899877766750598899997
Q gi|254780648|r 204 GYKEFILADIPGIIKNAHQGAGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLS 279 (335)
Q Consensus 204 ~~~~~~i~D~PGlIegA~~~~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlN 279 (335)
..+.+.++|.||= + .|.+.. .-.|..+.||++.+..|..|- ++.|... ..+.-+..+|++|
T Consensus 118 ~~Rh~s~VDcPGH-----~------~l~~nmi~Ga~~mD~aiLvvaa~eg~P~pQT---~EHl~~~-~~~gi~~~iv~~n 182 (460)
T PTZ00327 118 LKRHVSFVDCPGH-----D------ILMATMLNGAAVMDAALLLIAANESCPQPQT---SEHLAAV-EIMKLKHIIILQN 182 (460)
T ss_pred CCEEEEEEECCCH-----H------HHHHHHHHCHHHCCEEEEEEECCCCCCCCHH---HHHHHHH-HHHCCCEEEEEEC
T ss_conf 2204899868987-----9------9999987476337679999986888876468---9999999-9728971999953
Q ss_pred CCCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 465899889999999999862------9948999888788999999999999985
Q gi|254780648|r 280 QIDTVDSDTLARKKNELATQC------GQVPFEFSSITGHGIPQILECLHDKIFS 328 (335)
Q Consensus 280 KiDl~~~e~~~~~~~~l~~~~------~~~vi~ISA~tg~GI~eL~~~I~e~L~~ 328 (335)
|+|++++++..+..+++.+.. +.+++|+||..+.|++.|++.|.+.+..
T Consensus 183 K~DlV~~e~~~~~~~ei~~~l~~t~~~~~PIIpvSA~~~~nid~L~~~i~~~ip~ 237 (460)
T PTZ00327 183 KIDLIKEVQALDQYEEIRNFIDGTIAENAPIIPISAQLKYNIDVLLEYICTQIPI 237 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHCCCHHHHHHHHHHHCCC
T ss_conf 5445588999999999999852576779998756544505879999999975899
No 183
>TIGR00475 selB selenocysteine-specific translation elongation factor; InterPro: IPR004535 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation . This family describes the elongation factor SelB, a close homologue of EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This family should not include an equivalent protein for eukaryotes. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=99.38 E-value=4.4e-12 Score=93.09 Aligned_cols=149 Identities=26% Similarity=0.339 Sum_probs=96.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCH-HHHHH------HCCCEECCE--EEEECC--EEEEEECCCCCCCCCCCCCCCHHHH
Q ss_conf 124421677753035410145401-21211------000000102--663298--6899822642124731167751234
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPK-IADYP------FTTLYPNLG--IVKEGY--KEFILADIPGIIKNAHQGAGIGDRF 230 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~k-Ia~yp------FTT~~P~lG--vv~~~~--~~~~i~D~PGlIegA~~~~glG~~F 230 (335)
||+-|==-=||+||+.+||.-... -++-| +-|++ +| -+..++ ..+.|+|.|| |+ +|
T Consensus 3 ~at~GHvDHGKT~L~k~LTgi~stsa~~lPeEkqKRG~tID--LGfAy~~l~~~n~~l~~iDvPG-----He------~f 69 (627)
T TIGR00475 3 IATAGHVDHGKTTLLKALTGIDSTSADRLPEEKQKRGMTID--LGFAYLPLPDINKRLGFIDVPG-----HE------KF 69 (627)
T ss_pred EEEECCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEE--CCCEECCCCCCCCCCEEEECCC-----HH------HH
T ss_conf 87312445047999998506430123127741025766246--0420036777771334785597-----38------99
Q ss_pred HHH----HHHHHHHHHHCCCCCCCH---HHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHHHHHH---HHHHHHH
Q ss_conf 433----333578875202222110---1346667899877766750598-8999974658998899999---9999986
Q gi|254780648|r 231 LKH----TERTHVLLHIVSALEENV---QAAYQCILDELSAYNSELRKKI-EIVGLSQIDTVDSDTLARK---KNELATQ 299 (335)
Q Consensus 231 Lrh----Ier~~vLl~VVD~s~~d~---~~~~~~I~~EL~~y~~~L~~Kp-~IIVlNKiDl~~~e~~~~~---~~~l~~~ 299 (335)
|+. +--.+.++.|||+.+--. .|.+.++ .++.-| .|+|+||+|.++++...+. ++.+.+.
T Consensus 70 l~n~lAg~~~i~~alLvVda~eG~~~QT~EHL~vl---------~~l~~~~~ivvltK~D~~d~~~~~~~E~~~~~~l~~ 140 (627)
T TIGR00475 70 LSNALAGIGGIDAALLVVDADEGVMTQTKEHLAVL---------KLLGIPELIVVLTKADRVDEEEVKRVEEELKEILEE 140 (627)
T ss_pred HHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHH---------HHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99986675654010035415778853238999999---------970896199997346745658999999999999876
Q ss_pred ----CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf ----299489998887889999999999999854523
Q gi|254780648|r 300 ----CGQVPFEFSSITGHGIPQILECLHDKIFSIRGE 332 (335)
Q Consensus 300 ----~~~~vi~ISA~tg~GI~eL~~~I~e~L~~~r~e 332 (335)
.+.++|.|||.||+||++|++.|.+.+++....
T Consensus 141 ~~~~~n~~~~~~SA~tG~Gi~~Lk~~L~~L~e~~~~~ 177 (627)
T TIGR00475 141 YEFLKNAKIFKTSAKTGQGIEELKKELKNLLESLDIK 177 (627)
T ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 4321157479991346877789999998657776554
No 184
>KOG0092 consensus
Probab=99.36 E-value=2.1e-12 Score=95.07 Aligned_cols=154 Identities=15% Similarity=0.230 Sum_probs=105.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------663298--6899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|-|+|-.|||||||+-+.-..+ ..+ +..|++| .+..++ ..|.|+||.|.=. -.+|..-+-
T Consensus 8 vvLLG~~~VGKSSlV~Rfvk~~--F~e----~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQER----y~slapMYy-- 75 (200)
T KOG0092 8 VVLLGDSGVGKSSLVLRFVKDQ--FHE----NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQER----YHSLAPMYY-- 75 (200)
T ss_pred EEEECCCCCCCHHHHHHHHHCC--CCC----CCCCCCCEEEEEEEEEECCCEEEEEEEECCCCCC----CCCCCCCEE--
T ss_conf 9998678777024112223275--663----2345400078999998489578999987677300----335561010--
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE--EEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECC
Q ss_conf 333578875202222110134666789987776675059889--9997465899889-9999999998629948999888
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEI--VGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSI 310 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~I--IVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~ 310 (335)
+.+++.|.|.|+++.+.....+.+..||+.- .....+ +|-||+||.+... ..+..+.+.+..+...|..||+
T Consensus 76 -RgA~AAivvYDit~~~SF~~aK~WvkeL~~~----~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAK 150 (200)
T KOG0092 76 -RGANAAIVVYDITDEESFEKAKNWVKELQRQ----ASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAK 150 (200)
T ss_pred -CCCCEEEEEEECCCHHHHHHHHHHHHHHHHH----CCCCEEEEEECCHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf -4776799998556678999999999999862----79875999832516541034546888898998549879998525
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7889999999999999854523
Q gi|254780648|r 311 TGHGIPQILECLHDKIFSIRGE 332 (335)
Q Consensus 311 tg~GI~eL~~~I~e~L~~~r~e 332 (335)
++.|++++...|.+.+...+.+
T Consensus 151 Tg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092 151 TGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred CCCCHHHHHHHHHHHCCCCCCC
T ss_conf 5658999999999756676622
No 185
>KOG0090 consensus
Probab=99.35 E-value=4e-12 Score=93.34 Aligned_cols=158 Identities=20% Similarity=0.297 Sum_probs=98.0
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 01124421677753035410145401212110000001026632986899822642124731167751234433333578
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
.+|-|+|+-++||++|+-.|+....+ --+|...||.++.+.......++|+||=-. =+-.=.++++|=.+++.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~---~TvtSiepn~a~~r~gs~~~~LVD~PGH~r----lR~kl~e~~~~~~~aka 111 (238)
T KOG0090 39 NAVLLVGLSDSGKTSLFTQLITGSHR---GTVTSIEPNEATYRLGSENVTLVDLPGHSR----LRRKLLEYLKHNYSAKA 111 (238)
T ss_pred CCEEEEECCCCCCEEEEEEHHCCCCC---CEEEEECCCEEEEEECCCCEEEEECCCCHH----HHHHHHHHCCCCCCCEE
T ss_conf 86899932789833554200138736---703210466135763686238875799588----99999987346552215
Q ss_pred HHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCHHHHHHHHHHHHHHC-------C--------
Q ss_conf 875202222--110134666789987776675059-8899997465899889999999999862-------9--------
Q gi|254780648|r 240 LLHIVSALE--ENVQAAYQCILDELSAYNSELRKK-IEIVGLSQIDTVDSDTLARKKNELATQC-------G-------- 301 (335)
Q Consensus 240 Ll~VVD~s~--~d~~~~~~~I~~EL~~y~~~L~~K-p~IIVlNKiDl~~~e~~~~~~~~l~~~~-------~-------- 301 (335)
|+||||... ++..+.-+.+..-|-.- ....++ |.+|++||.|+..+...+.+.+.+.+.. .
T Consensus 112 iVFVVDSa~f~k~vrdvaefLydil~~~-~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~e 190 (238)
T KOG0090 112 IVFVVDSATFLKNVRDVAEFLYDILLDS-RVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDE 190 (238)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999833224600679999999999860-123479988999555223213859999999999999999877653025630
Q ss_pred ----------------------C--CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf ----------------------9--489998887889999999999999
Q gi|254780648|r 302 ----------------------Q--VPFEFSSITGHGIPQILECLHDKI 326 (335)
Q Consensus 302 ----------------------~--~vi~ISA~tg~GI~eL~~~I~e~L 326 (335)
. ...+-|++++ +++++.+||.+.+
T Consensus 191 d~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090 191 DIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCEEEEEECCCCCC-CHHHHHHHHHHHC
T ss_conf 01354313643310102015623257865146767-7589999999759
No 186
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.34 E-value=4.9e-12 Score=92.79 Aligned_cols=148 Identities=22% Similarity=0.283 Sum_probs=87.3
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHH-----HHHH-----------HCCCEECCEE--EEECCEEEEEECCCCCCCCCCC
Q ss_conf 11244216777530354101454012-----1211-----------0000001026--6329868998226421247311
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKI-----ADYP-----------FTTLYPNLGI--VKEGYKEFILADIPGIIKNAHQ 222 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kI-----a~yp-----------FTT~~P~lGv--v~~~~~~~~i~D~PGlIegA~~ 222 (335)
.||++|--.+|||||..+|+....+. ..|- .-|.. ... +......+.++|+||-
T Consensus 4 Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~--~~~~~~~~~~~~~~~IDtPGH------ 75 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITIN--TAHVEYETANRHYAHVDCPGH------ 75 (195)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCC--CEEEEEECCCEEEEECCCCCH------
T ss_conf 999996058869899999999886634444112001005466650588614--418999608816996268960------
Q ss_pred CCCCHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH----HH
Q ss_conf 67751234433333----57887520222211013466678998777667505988999974658998899999----99
Q gi|254780648|r 223 GAGIGDRFLKHTER----THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARK----KN 294 (335)
Q Consensus 223 ~~glG~~FLrhIer----~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~----~~ 294 (335)
.+|.+...| ++..+.|||+.+- +..|-+.. +.. -..+.-++.+|++||+|+++.++..+. ..
T Consensus 76 -----~dF~~~~i~g~~~~D~aiLVVdA~eG-v~~QT~eh---~~l-a~~lgi~~iiV~iNK~D~~~~~~~~~~v~~ei~ 145 (195)
T cd01884 76 -----ADYIKNMITGAAQMDGAILVVSATDG-PMPQTREH---LLL-ARQVGVPYIVVFLNKADMVDDEELLELVEMEVR 145 (195)
T ss_pred -----HHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHH---HHH-HHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf -----77888998635113626899852778-74789999---999-998099962799968778987899999999999
Q ss_pred HHHHHCC-----CCEEEEECCCCC----------CHHHHHHHHHHHH
Q ss_conf 9998629-----948999888788----------9999999999999
Q gi|254780648|r 295 ELATQCG-----QVPFEFSSITGH----------GIPQILECLHDKI 326 (335)
Q Consensus 295 ~l~~~~~-----~~vi~ISA~tg~----------GI~eL~~~I~e~L 326 (335)
++.+..+ .+++|+||++|. ++.+|++.|.+.+
T Consensus 146 ~~l~~~g~~~~~~p~ip~Sa~~g~~~~~~~~~~~~i~~Lldai~~~i 192 (195)
T cd01884 146 ELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYI 192 (195)
T ss_pred HHHHHCCCCCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99984299955682999773875357888755369999999999648
No 187
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.33 E-value=1.3e-11 Score=90.24 Aligned_cols=110 Identities=19% Similarity=0.216 Sum_probs=72.5
Q ss_pred ECEEEEECCCCCCCEEEEEEC---CCCC-------------HHHHHH------HCCCEECCEEEEECCEEEEEECCCCCC
Q ss_conf 011244216777530354101---4540-------------121211------000000102663298689982264212
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVT---RAKP-------------KIADYP------FTTLYPNLGIVKEGYKEFILADIPGII 217 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls---~ak~-------------kIa~yp------FTT~~P~lGvv~~~~~~~~i~D~PGlI 217 (335)
-.|||+|---|||+||.-+|- ++-. .+.||- ..|+.+.+-.+.+++.+|.++||||-
T Consensus 3 Rniai~gH~gaGKTtL~EalL~~~G~i~r~G~V~~~~~~g~t~~D~~~eE~~R~iSi~~~~~~~~w~~~kinliDTPG~- 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH- 81 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCEEECCEEEEEECCEEEEEEECCCC-
T ss_conf 1799984799998999999998668633385463036888604688799986594486363788789989999979697-
Q ss_pred CCCCCCCCCHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH
Q ss_conf 4731167751234433333----57887520222211013466678998777667505988999974658998
Q gi|254780648|r 218 KNAHQGAGIGDRFLKHTER----THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS 286 (335)
Q Consensus 218 egA~~~~glG~~FLrhIer----~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~ 286 (335)
.+|...+++ ++.-+.|||+.+. +..+-+.+.+.++. .++|+++++||+|....
T Consensus 82 ----------~DF~~e~~~al~v~D~AviVv~a~~G-Ve~~T~~~w~~a~~-----~~iP~iifINKmDr~~a 138 (267)
T cd04169 82 ----------EDFSEDTYRTLTAVDSAVMVIDAAKG-VEPQTRKLFEVCRL-----RGIPIITFINKLDREGR 138 (267)
T ss_pred ----------HHHHHHHHHHHHHHHCEEEEEECCCC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCCCC
T ss_conf ----------78999999999886454799525666-53558999999997-----29997999853456789
No 188
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.32 E-value=5.9e-12 Score=92.28 Aligned_cols=145 Identities=23% Similarity=0.320 Sum_probs=84.2
Q ss_pred CEEEEECCCCCCCEEEEEE---CCCC-----------CH-HH----HHH------------HCCCEECCEEEEECCEEEE
Q ss_conf 1124421677753035410---1454-----------01-21----211------------0000001026632986899
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASV---TRAK-----------PK-IA----DYP------------FTTLYPNLGIVKEGYKEFI 209 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~l---s~ak-----------~k-Ia----~yp------------FTT~~P~lGvv~~~~~~~~ 209 (335)
.|+++|-..+|||||+-+| +++= .+ .+ .|. .-|.....-.+..+++++.
T Consensus 1 Ni~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~~~~~~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEECCEEEE
T ss_conf 98999668998999999999985997688999999999854998750556613898798589258858999984993699
Q ss_pred EECCCCCCCCCCCCCCCHHHHHHHHH----HHHHHHHHCCCCCCCHHHHHH---HHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 82264212473116775123443333----357887520222211013466---67899877766750598899997465
Q gi|254780648|r 210 LADIPGIIKNAHQGAGIGDRFLKHTE----RTHVLLHIVSALEENVQAAYQ---CILDELSAYNSELRKKIEIVGLSQID 282 (335)
Q Consensus 210 i~D~PGlIegA~~~~glG~~FLrhIe----r~~vLl~VVD~s~~d~~~~~~---~I~~EL~~y~~~L~~Kp~IIVlNKiD 282 (335)
++|+||- .+|.+.+. .+++.+.|||+........+. ..++.+.. -..|.-+..||++||||
T Consensus 81 iiDtPGH-----------~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l-~~~lGik~iIVavNKMD 148 (219)
T cd01883 81 ILDAPGH-----------RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALL-ARTLGVKQLIVAVNKMD 148 (219)
T ss_pred EEECCCC-----------HHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH-HHHCCCCEEEEEEECCC
T ss_conf 9878972-----------66788999877531668999985767510366777659999999-99849974899998753
Q ss_pred CCC----HHHHHHHHHHHH---HHCC-----CCEEEEECCCCCCHHH
Q ss_conf 899----889999999999---8629-----9489998887889999
Q gi|254780648|r 283 TVD----SDTLARKKNELA---TQCG-----QVPFEFSSITGHGIPQ 317 (335)
Q Consensus 283 l~~----~e~~~~~~~~l~---~~~~-----~~vi~ISA~tg~GI~e 317 (335)
+++ ++...++..++. +..+ .+++||||..|+||-+
T Consensus 149 ~v~~~y~~~rf~~i~~~~~~~l~~~g~~~~~~~~IPiSa~~GdNi~~ 195 (219)
T cd01883 149 DVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 68865259999999999999999829995661599933676630466
No 189
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.32 E-value=3.9e-13 Score=99.43 Aligned_cols=53 Identities=34% Similarity=0.515 Sum_probs=43.3
Q ss_pred CEEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECCEEEEECCEEEEEECCCCC
Q ss_conf 11244216777530354101454-012121100000010266329868998226421
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNLGIVKEGYKEFILADIPGI 216 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGl 216 (335)
-|++||+||||||||+|+|.+.+ .++++.|.||+.-. .+... ..+.+.||||+
T Consensus 104 ~v~ivG~PNVGKSSlIN~L~g~k~~~vs~~PG~Tr~~q--~i~~~-~~i~liDTPGi 157 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITLM-KRIYLIDCPGV 157 (157)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE--EEEEC-CCEEEEECCCC
T ss_conf 99998258853368898872673588659883377779--99968-99999969099
No 190
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.31 E-value=1.1e-11 Score=90.72 Aligned_cols=149 Identities=18% Similarity=0.183 Sum_probs=100.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE-----EEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHH-
Q ss_conf 12442167775303541014540121211000000102-----6632986--899822642124731167751234433-
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG-----IVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKH- 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG-----vv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrh- 233 (335)
|-+||=++||||+|+.+.+... || .+-.|.++ .+..++. .+.|+||.|- +. .+-|+.
T Consensus 16 iVlVGD~~VGKTsLl~~~~~~~-----F~-~~y~pTv~~~~~~~i~v~~~~v~L~lWDTAGq-----E~----y~~lr~~ 80 (232)
T cd04174 16 LVLVGDVQCGKTAMLQVLAKDC-----YP-ETYVPTVFENYTAGLETEEQRVELSLWDTSGS-----PY----YDNVRPL 80 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHCC-----CC-CCCCCCEEEEEEEEEEECCEEEEEEEEECCCC-----CC----CCHHHHH
T ss_conf 9999989989999999997398-----99-98588368888999999999999999838997-----01----0036799
Q ss_pred -HHHHHHHHHHCCCCCCCHHHH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-HHHH------------HHHHHHHH
Q ss_conf -333578875202222110134-66678998777667505988999974658998-8999------------99999998
Q gi|254780648|r 234 -TERTHVLLHIVSALEENVQAA-YQCILDELSAYNSELRKKIEIVGLSQIDTVDS-DTLA------------RKKNELAT 298 (335)
Q Consensus 234 -Ier~~vLl~VVD~s~~d~~~~-~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~-e~~~------------~~~~~l~~ 298 (335)
...+++++.|.|+++++..+. ...+..|+..|.+. -|.++|-||+||-+. ..+. +.-..+.+
T Consensus 81 yY~~a~~~ll~Fdvt~~~Sfe~~~~~Wi~Ei~~~~p~---~piiLVGnK~DLr~d~~~l~~L~~~~~~pVt~eeg~~~Ak 157 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPS---TRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAK 157 (232)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEEECHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 7406878999996898799998999999999986899---9789998760215475778899756888757999999999
Q ss_pred HCCCC-EEEEECCCCC-CHHHHHHHHHHHHHH
Q ss_conf 62994-8999888788-999999999999985
Q gi|254780648|r 299 QCGQV-PFEFSSITGH-GIPQILECLHDKIFS 328 (335)
Q Consensus 299 ~~~~~-vi~ISA~tg~-GI~eL~~~I~e~L~~ 328 (335)
..+.. ++.+||++++ |++++.+.......+
T Consensus 158 ~iga~~Y~E~SA~tge~~v~~vF~~a~~~~~~ 189 (232)
T cd04174 158 QLGAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred HCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 74997899875686662599999999999985
No 191
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=99.31 E-value=1.4e-12 Score=96.17 Aligned_cols=121 Identities=19% Similarity=0.271 Sum_probs=74.3
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE--EEECCEEEEEECCCCCCCCCCCCCCCHHHHH---HHHH
Q ss_conf 1124421677753035410145401212110000001026--6329868998226421247311677512344---3333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI--VKEGYKEFILADIPGIIKNAHQGAGIGDRFL---KHTE 235 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv--v~~~~~~~~i~D~PGlIegA~~~~glG~~FL---rhIe 235 (335)
-|=|+|+.+|||+||+..|...+.. . -.|+..|+.+. ....+..+.++|+||= .- |-.+++ ++..
T Consensus 5 tvLllGl~~sGKT~Lf~~L~~~~~~-~--T~tS~~~n~~~~~~~~~~~~~~lvD~PGh-----~k--lR~~~~~~~~~~~ 74 (181)
T pfam09439 5 AVIIAGLCDSGKTSLFTLLTTGSVR-K--TVTSQEPSAAYKYMNNKGNSLTLIDFPGH-----VK--LRYKLLETLKDSS 74 (181)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-C--EECCCCCCCEEEEECCCCCEEEEEECCCC-----HH--HHHHHHHHHHHHC
T ss_conf 6999868999899999999759948-7--58886786406875168966899988996-----89--9999998643002
Q ss_pred HHHHHHHHCCCCC-C-CHHHHHHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 3578875202222-1-101346667899877766750--59889999746589988999999
Q gi|254780648|r 236 RTHVLLHIVSALE-E-NVQAAYQCILDELSAYNSELR--KKIEIVGLSQIDTVDSDTLARKK 293 (335)
Q Consensus 236 r~~vLl~VVD~s~-~-d~~~~~~~I~~EL~~y~~~L~--~Kp~IIVlNKiDl~~~e~~~~~~ 293 (335)
.++.||||||++. . +..+.-+.+.+-|. +..+. .-|.+|++||.|+..+.....+.
T Consensus 75 ~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~--~~~~~~~~vPvLI~cNKqDl~~A~~~~~Ik 134 (181)
T pfam09439 75 SLRGLVFVVDSTAFPKEVTDTAEFLYDILS--ITELLKNGIDILIACNKQEIFTARPPKKIK 134 (181)
T ss_pred CCEEEEEEEECCCCHHHHHHHHHHHHHHHH--CHHHCCCCCCEEEEEECCCCCCCCCHHHHH
T ss_conf 644999999786656679999999999984--454336899789997374633577999999
No 192
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.6e-11 Score=89.69 Aligned_cols=142 Identities=23% Similarity=0.362 Sum_probs=95.2
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEE-----CCEEEEEECCCCCCCCCCCCCCCHHHHH--H--
Q ss_conf 124421677753035410145401212110000001026632-----9868998226421247311677512344--3--
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKE-----GYKEFILADIPGIIKNAHQGAGIGDRFL--K-- 232 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~-----~~~~~~i~D~PGlIegA~~~~glG~~FL--r-- 232 (335)
|.+.|-=--||||||-+|-+++ |+.-..--..-++|-.+. +...++|.|||| |+ .|. |
T Consensus 8 VtimGHVDHGKTtLLD~IR~t~--Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPG-----He------AFt~mRaR 74 (509)
T COG0532 8 VTIMGHVDHGKTTLLDKIRKTN--VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPG-----HE------AFTAMRAR 74 (509)
T ss_pred EEEECCCCCCCCCHHHHHHCCC--CCCCCCCCEEEEEEEEEEEECCCCCCEEEEECCCC-----HH------HHHHHHHC
T ss_conf 9996743588420166674176--43566785001743499986468865289974895-----78------88878755
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH------CC--CCE
Q ss_conf 3333578875202222110134666789987776675059889999746589988999999999986------29--948
Q gi|254780648|r 233 HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQ------CG--QVP 304 (335)
Q Consensus 233 hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~------~~--~~v 304 (335)
=-.=|++.++|||+.+----+..+.|.+ ++. ..-|.++++||+|.++.+- .....++.+. ++ ..+
T Consensus 75 Ga~vtDIaILVVa~dDGv~pQTiEAI~h-ak~-----a~vP~iVAiNKiDk~~~np-~~v~~el~~~gl~~E~~gg~v~~ 147 (509)
T COG0532 75 GASVTDIAILVVAADDGVMPQTIEAINH-AKA-----AGVPIVVAINKIDKPEANP-DKVKQELQEYGLVPEEWGGDVIF 147 (509)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHH-HHH-----CCCCEEEEEECCCCCCCCH-HHHHHHHHHCCCCHHHCCCCEEE
T ss_conf 7754457999997567856617999999-987-----7999899985432799887-89999887779887661881499
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998887889999999999
Q gi|254780648|r 305 FEFSSITGHGIPQILECLH 323 (335)
Q Consensus 305 i~ISA~tg~GI~eL~~~I~ 323 (335)
+|+||++|+|+++|++.|.
T Consensus 148 VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 148 VPVSAKTGEGIDELLELIL 166 (509)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9743247879799999999
No 193
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.29 E-value=3.8e-12 Score=93.49 Aligned_cols=166 Identities=13% Similarity=0.165 Sum_probs=111.2
Q ss_pred EECEEEEECCCCCCCEEEEEECCCCC-HHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 30112442167775303541014540-12121100000010266329868998226421247311677512344333335
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVTRAKP-KIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls~ak~-kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
--+|-|.|..-||||||+|||=.... .|+.-+-+|..++.-+..++...++++|+||+=+|-.+++-.--.++..+.+.
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~ 118 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKL 118 (296)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 61589743777768899999970267342104668870156774126652488437885532022189999999886322
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH------------H----HHHHHHHHHHHC-
Q ss_conf 78875202222110134666789987776675059889999746589988------------9----999999999862-
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD------------T----LARKKNELATQC- 300 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e------------~----~~~~~~~l~~~~- 300 (335)
++++.++|+.+++.--+++.+++-+.. -.+++.++++|.+|...+- . +.+....+.+.+
T Consensus 119 DLvL~l~~~~draL~~d~~f~~dVi~~----~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q 194 (296)
T COG3596 119 DLVLWLIKADDRALGTDEDFLRDVIIL----GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQ 194 (296)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHH----CCCCEEEEEEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 479996147770014779999999986----0576069997366543655430002599987899999999999999876
Q ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf -9948999888788999999999999985
Q gi|254780648|r 301 -GQVPFEFSSITGHGIPQILECLHDKIFS 328 (335)
Q Consensus 301 -~~~vi~ISA~tg~GI~eL~~~I~e~L~~ 328 (335)
-.+++..|+...+|+++|...+.+.+..
T Consensus 195 ~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 195 EVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HCCCEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 31774775254676689999999986731
No 194
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.29 E-value=1.4e-11 Score=90.06 Aligned_cols=142 Identities=20% Similarity=0.311 Sum_probs=83.4
Q ss_pred CEEEEECCCCCCCEEEEEEC---CCC-C-----------HHH----HHHH------------CCCEECCEEEEECCEEEE
Q ss_conf 11244216777530354101---454-0-----------121----2110------------000001026632986899
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVT---RAK-P-----------KIA----DYPF------------TTLYPNLGIVKEGYKEFI 209 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls---~ak-~-----------kIa----~ypF------------TT~~P~lGvv~~~~~~~~ 209 (335)
-|+++|-=.+|||||+-+|. +.- . +.+ .|.| .|.+--.-.+..+.+.++
T Consensus 9 ~i~~~GhVD~GKSTL~G~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~a~~~D~~~eEr~rGiTid~~~~~f~~~~~~~~ 88 (426)
T PRK12317 9 NLAVIGHVDHGKSTLVGRLLYETGAVDEHIIEEYEEEAKKKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFT 88 (426)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCEEEEEEEEEECCCCEEE
T ss_conf 99999522876888876898772994489999999899864877521432125786687558278831699954981699
Q ss_pred EECCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCC
Q ss_conf 8226421247311677512344333----335788752022221-101346667899877766750598-8999974658
Q gi|254780648|r 210 LADIPGIIKNAHQGAGIGDRFLKHT----ERTHVLLHIVSALEE-NVQAAYQCILDELSAYNSELRKKI-EIVGLSQIDT 283 (335)
Q Consensus 210 i~D~PGlIegA~~~~glG~~FLrhI----er~~vLl~VVD~s~~-d~~~~~~~I~~EL~~y~~~L~~Kp-~IIVlNKiDl 283 (335)
++|+|| |+ +|+|.. -.+++.+.|||+.+. -+..+ .++.|.. ..++.-| .|+++||||+
T Consensus 89 iiD~PG-----H~------~fi~nmi~Gas~~D~ailvV~A~~~~G~~~Q---T~eHl~l--~~~lgi~~iiV~vnKmD~ 152 (426)
T PRK12317 89 IIDCPG-----HR------DFVKNMITGASQADAAVLVVSARDAGGVMPQ---TREHVFL--ARTLGINQLIVAINKMDA 152 (426)
T ss_pred EEECCC-----CH------HHHHHHHHHHCCCCEEEEEEECCCCCCCCHH---HHHHHHH--HHHHCCCEEEEEEECCCC
T ss_conf 987896-----36------6787787453467727999963656676477---8999999--998099839999953335
Q ss_pred CC--HHHHHHHHHHHH---HHCC-----CCEEEEECCCCCCHHHH
Q ss_conf 99--889999999999---8629-----94899988878899999
Q gi|254780648|r 284 VD--SDTLARKKNELA---TQCG-----QVPFEFSSITGHGIPQI 318 (335)
Q Consensus 284 ~~--~e~~~~~~~~l~---~~~~-----~~vi~ISA~tg~GI~eL 318 (335)
++ ++...+...++. +..+ .+++||||.+|+|+.+.
T Consensus 153 v~~~~~~~~~i~~~~~~~l~~~g~~~~~i~~iPiSa~~Gdni~~~ 197 (426)
T PRK12317 153 VNYDEKRYNEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 197 (426)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 677889999999999999997098803470887532346564116
No 195
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.28 E-value=1.2e-11 Score=90.35 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=98.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHH--HHHH
Q ss_conf 1244216777530354101454012121100000010-2663298--689982264212473116775123443--3333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLK--HTER 236 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLr--hIer 236 (335)
|-+||-++||||||+++...-.= ...|. +|..... -.+..++ ..+.|+||+|--+ .+.|+ +...
T Consensus 8 ivlvGd~~VGKTsLi~r~~~~~F-~~~y~-pTi~~~~~~~~~i~~~~v~l~iwDTaGqe~---------f~~l~~~~y~~ 76 (182)
T cd04172 8 IVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFENYTASFEIDTQRIELSLWDTSGSPY---------YDNVRPLSYPD 76 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CEEEEEEEEEEEECCEEEEEEEEECCCCHH---------CCCCCHHHHCC
T ss_conf 99999999899999999983999-99868-735322689999999999999996898620---------12212555127
Q ss_pred HHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-------------HHHHHHHHHHHCC-
Q ss_conf 5788752022221101346-667899877766750598899997465899889-------------9999999998629-
Q gi|254780648|r 237 THVLLHIVSALEENVQAAY-QCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-------------LARKKNELATQCG- 301 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~-~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-------------~~~~~~~l~~~~~- 301 (335)
+++++.|.|+++++..+.. +.+..|++.+.+ +-|.++|.||+||-++.. ..+.-+++.+..+
T Consensus 77 ~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~---~~~iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~~~A~~~g~ 153 (182)
T cd04172 77 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA 153 (182)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 87899996489778899999999999998687---998899961710124414566776456778699999999997699
Q ss_pred CCEEEEECCCCCC-HHHHHHHHHHHH
Q ss_conf 9489998887889-999999999999
Q gi|254780648|r 302 QVPFEFSSITGHG-IPQILECLHDKI 326 (335)
Q Consensus 302 ~~vi~ISA~tg~G-I~eL~~~I~e~L 326 (335)
...+.+||+++++ ++++.+...+..
T Consensus 154 ~~y~EtSAk~~~n~V~e~F~~a~~a~ 179 (182)
T cd04172 154 ATYIECSALQSENSVRDIFHVATLAC 179 (182)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 79999170789959899999999998
No 196
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.27 E-value=1e-12 Score=96.92 Aligned_cols=54 Identities=28% Similarity=0.480 Sum_probs=44.2
Q ss_pred CEEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECCEEEEECCEEEEEECCCCCC
Q ss_conf 11244216777530354101454-0121211000000102663298689982264212
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNLGIVKEGYKEFILADIPGII 217 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlI 217 (335)
-||+||+||||||||+|+|.+.+ ..+++.|.||+... .+.. +.++.+.|+||++
T Consensus 85 ~i~ivG~PNVGKSSlIN~L~g~k~~~v~~~PG~Tr~~~--~i~~-~~~i~liDTPGi~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQ--TIFL-TPTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEE--EEEE-CCCEEEEECCCCC
T ss_conf 68997788866999999985886687659994157668--9996-8999999898868
No 197
>TIGR00436 era GTP-binding protein Era; InterPro: IPR005662 Era is an essential G-protein in Escherichia coli identified originally as a homologue protein to Ras (E. coli Ras-like protein). It binds to GTP/GDP and contains a low intrinsic GTPase activity. Its function remains elusive, although it may be associated with cell division, energy metabolism, and cell-cycle check point. The protein has recently been shown to specifically bind to 16S rRNA and the 30S ribosomal subunit . Involvement of Era in protein synthesis is suggested by the fact that Era depletion results in the translation defect both in vitro and in vivo. A Type 2 KH domain is found near the C-terminus. ; GO: 0003723 RNA binding, 0005525 GTP binding, 0005622 intracellular.
Probab=99.27 E-value=2.1e-12 Score=95.01 Aligned_cols=162 Identities=24% Similarity=0.288 Sum_probs=118.9
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHH-HHHHHCCCEECCEEEEECCEE-EEEECCCCCCCC-CCCCC-CCHHHHHHHHHH
Q ss_conf 11244216777530354101454012-121100000010266329868-998226421247-31167-751234433333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKI-ADYPFTTLYPNLGIVKEGYKE-FILADIPGIIKN-AHQGA-GIGDRFLKHTER 236 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kI-a~ypFTT~~P~lGvv~~~~~~-~~i~D~PGlIeg-A~~~~-glG~~FLrhIer 236 (335)
-++++|.||+|||||+|.+.+.+..+ ++.|-||+....|+......+ ++++|+||+.+. .+..- -+-......+..
T Consensus 2 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~pg~~~~~~~~~~~~~~~~~~~~~~~ 81 (278)
T TIGR00436 2 FVAILGRPNVGKSTLLNKLLGQKISITSPKPQTTRNRISGILTTGASQNIIFIDTPGFHEPEKHKLGELLNKEARSALGG 81 (278)
T ss_pred CEEECCCCCCCHHHHHHHHHCCCHHCCCCCCHHHHHHHHEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 11211577653366777663241010023101234332001223665515786258765124567788888888753123
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CHHHHHHHHHHHH---HHCCCCEEEEECCCC
Q ss_conf 578875202222110134666789987776675059889999746589-9889999999999---862994899988878
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTV-DSDTLARKKNELA---TQCGQVPFEFSSITG 312 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~-~~e~~~~~~~~l~---~~~~~~vi~ISA~tg 312 (335)
.+++++++|........+ ..+.+.|.. .+.|..+.+||+|.. ..+.......... ...++.++++|+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (278)
T TIGR00436 82 VDLLLFVVDSDEWNGDGD-EFLLEKLQN-----LKRPVLLTLNKLDNKNFPDKLLPLLDKYAGLEDFKPWPIVPISALKG 155 (278)
T ss_pred CEEEEEEEECCCCCCCCH-HHHHHHHHH-----CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHH
T ss_conf 226889863344556404-688987652-----02101001223331010356777776665542046752011011210
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8999999999999985
Q gi|254780648|r 313 HGIPQILECLHDKIFS 328 (335)
Q Consensus 313 ~GI~eL~~~I~e~L~~ 328 (335)
.++..+...+...+..
T Consensus 156 ~~~~~~~~~~~~~~~~ 171 (278)
T TIGR00436 156 DNTEELKAFLEAKLPE 171 (278)
T ss_pred CHHHHHHHHHHHHCCC
T ss_conf 0057788887753033
No 198
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=99.27 E-value=8.3e-12 Score=91.41 Aligned_cols=139 Identities=25% Similarity=0.294 Sum_probs=89.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298689982264212473116775123443333357887
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
|.+||...+||+||.++|-+...+-- =| =-|++.++. .+||||=. -+++.|=+.-|=-...+++|+
T Consensus 3 ~~f~G~~gCGKTTL~q~L~g~~~~YK----KT-----QAvE~~~k~--~IDTPGEY---~enr~~Y~AL~vtaaDAd~i~ 68 (144)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEEIKYK----KT-----QAVEYKDKE--AIDTPGEY---VENRRYYSALIVTAADADVIA 68 (144)
T ss_pred EEEEECCCCCHHHHHHHCCCCCCCEE----EE-----EEEEECCCC--CCCCCCCC---CCCCCHHHHHHHHHHCCEEEE
T ss_conf 78871588874435431168732102----33-----445425888--65598500---157523788888872102366
Q ss_pred HHCCCCCCC-HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH-HHHHHHHCCCCEEEEECCCCCCHHHHH
Q ss_conf 520222211-013466678998777667505988999974658998899999-999998629948999888788999999
Q gi|254780648|r 242 HIVSALEEN-VQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARK-KNELATQCGQVPFEFSSITGHGIPQIL 319 (335)
Q Consensus 242 ~VVD~s~~d-~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~-~~~l~~~~~~~vi~ISA~tg~GI~eL~ 319 (335)
+|.++.++. +... .|..-+.+||.|=+++|+||++.+...+. .+.|....-.++|.||++...||++|+
T Consensus 69 lV~~a~~~~~~f~P---------gF~~~f~kK~~IG~vTK~DLA~~d~~i~r~~~~L~~AG~~~iF~~~~~d~~G~~~l~ 139 (144)
T TIGR02528 69 LVQSATDEESRFSP---------GFASIFVKKEVIGIVTKIDLAEADKDIERAKRLLETAGAEKIFEISSVDEKGIEELV 139 (144)
T ss_pred EEECCCCCCCCCCC---------CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHH
T ss_conf 77357764223785---------000236788634788403788773479999999872365433165077804589999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780648|r 320 ECLH 323 (335)
Q Consensus 320 ~~I~ 323 (335)
+.|.
T Consensus 140 ~yL~ 143 (144)
T TIGR02528 140 DYLN 143 (144)
T ss_pred HHHC
T ss_conf 9844
No 199
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.27 E-value=3.3e-11 Score=87.75 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=99.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHH--HHH
Q ss_conf 1244216777530354101454012121100000010-26632986--899822642124731167751234433--333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKH--TER 236 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrh--Ier 236 (335)
|-+||-.+||||+|+.+.+...- ..+|. .|...+. -.+..++. .+.|+||+|--+ ++-++. ...
T Consensus 4 iVlvGD~~VGKTsLl~~f~~~~F-~~~y~-pTi~~~~~~~~~vd~~~v~L~iWDTAGqE~---------y~~lr~~yyr~ 72 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAKDAY-PGSYV-PTVFENYTASFEIDKRRIELNMWDTSGSSY---------YDNVRPLAYPD 72 (222)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCCC-CCEEEEEEEEEEECCEEEEEEEECCCCCCH---------HHHHHHHHCCC
T ss_conf 99989899898999999963999-99847-845877899999999999999976888503---------45567875036
Q ss_pred HHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-HHHHH------------HHHHHHHHCCC
Q ss_conf 5788752022221101346-6678998777667505988999974658998-89999------------99999986299
Q gi|254780648|r 237 THVLLHIVSALEENVQAAY-QCILDELSAYNSELRKKIEIVGLSQIDTVDS-DTLAR------------KKNELATQCGQ 302 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~-~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~-e~~~~------------~~~~l~~~~~~ 302 (335)
+++.+.|.|+++++..+.. ..+..|+..|.+. -|.++|-||+||-+. ..+.+ .-..+.++.+.
T Consensus 73 a~~~llvfdit~~~SF~~v~~~W~~ei~~~~p~---~piiLVGnK~DLR~d~~~~~el~~~~~~pVt~eeg~~lA~~~ga 149 (222)
T cd04173 73 SDAVLICFDISRPETLDSVLKKWQGETQEFCPN---AKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA 149 (222)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 989999983897788999999999999985899---97899958742456878899998557888789999999997699
Q ss_pred -CEEEEECCCCC-CHHHHHHHHHHHHH
Q ss_conf -48999888788-99999999999998
Q gi|254780648|r 303 -VPFEFSSITGH-GIPQILECLHDKIF 327 (335)
Q Consensus 303 -~vi~ISA~tg~-GI~eL~~~I~e~L~ 327 (335)
..+.+||++++ |++++.+.....+.
T Consensus 150 ~~y~EcSAk~~~n~V~evF~~a~~~~~ 176 (222)
T cd04173 150 VSYVECSSRSSERSVRDVFHVATVASL 176 (222)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 889988848687498999999999998
No 200
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=99.25 E-value=1.4e-12 Score=96.07 Aligned_cols=56 Identities=38% Similarity=0.513 Sum_probs=45.3
Q ss_pred CEEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCC
Q ss_conf 11244216777530354101454-012121100000010266329868998226421247
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKN 219 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIeg 219 (335)
-|++||+||||||||+|+|.+.+ .++++.|.+|+..+ .++.+ ..+.++|+||++..
T Consensus 123 ~v~vvG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tk~~q--~v~l~-~~i~L~DtPGvl~P 179 (282)
T PRK09563 123 RAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKSQQ--WIKLG-KGLELLDTPGILWP 179 (282)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCEEEEE--EEEEC-CCEEEECCCCCCCC
T ss_conf 89997069776799999874770587679654100258--99957-98899668874578
No 201
>KOG1145 consensus
Probab=99.25 E-value=3.6e-11 Score=87.54 Aligned_cols=152 Identities=18% Similarity=0.312 Sum_probs=104.2
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEE---ECCEEEEEECCCCCCCCCCCCCCCHHHHHHH----
Q ss_conf 112442167775303541014540121211000000102663---2986899822642124731167751234433----
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVK---EGYKEFILADIPGIIKNAHQGAGIGDRFLKH---- 233 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~---~~~~~~~i~D~PGlIegA~~~~glG~~FLrh---- 233 (335)
=|-+.|----||+|||.++-++ .||.-++--+..++|-+. .++++++|.||||- -.|..-
T Consensus 155 VVTiMGHVDHGKTTLLD~lRks--~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH-----------aAF~aMRaRG 221 (683)
T KOG1145 155 VVTIMGHVDHGKTTLLDALRKS--SVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGH-----------AAFSAMRARG 221 (683)
T ss_pred EEEEEECCCCCHHHHHHHHHHC--CEEHHHCCCCCCEECEEEEECCCCCEEEEECCCCH-----------HHHHHHHHCC
T ss_conf 6998601357700199887407--22013237710000229996389977887568747-----------8899998626
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH------C--CCCEE
Q ss_conf 333578875202222110134666789987776675059889999746589988999999999986------2--99489
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQ------C--GQVPF 305 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~------~--~~~vi 305 (335)
..-+|+++.||-+.+.-..+..+.|.+ .+-++-|.++++||||.+.+. ..+..++|... . +..++
T Consensus 222 A~vtDIvVLVVAadDGVmpQT~EaIkh------Ak~A~VpiVvAinKiDkp~a~-pekv~~eL~~~gi~~E~~GGdVQvi 294 (683)
T KOG1145 222 ANVTDIVVLVVAADDGVMPQTLEAIKH------AKSANVPIVVAINKIDKPGAN-PEKVKRELLSQGIVVEDLGGDVQVI 294 (683)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHH------HHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHCCCCHHHCCCCEEEE
T ss_conf 864447999997267756768999998------876599789998436789989-8999999987693277707823699
Q ss_pred EEECCCCCCHHHHHHHHH--HHHHHHHHH
Q ss_conf 998887889999999999--999854523
Q gi|254780648|r 306 EFSSITGHGIPQILECLH--DKIFSIRGE 332 (335)
Q Consensus 306 ~ISA~tg~GI~eL~~~I~--e~L~~~r~e 332 (335)
||||++|+|++.|.+++. ..++.++++
T Consensus 295 piSAl~g~nl~~L~eaill~Ae~mdLkA~ 323 (683)
T KOG1145 295 PISALTGENLDLLEEAILLLAEVMDLKAD 323 (683)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 86511479868999999999998641168
No 202
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.25 E-value=3.7e-11 Score=87.44 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=76.0
Q ss_pred CEEEEECCCCCCCEEEEEE---CCC---CCH------HHHHH------HCCCEECCEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 1124421677753035410---145---401------21211------00000010266329868998226421247311
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASV---TRA---KPK------IADYP------FTTLYPNLGIVKEGYKEFILADIPGIIKNAHQ 222 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~l---s~a---k~k------Ia~yp------FTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~ 222 (335)
.|||+|-.-||||||.-++ |++ .-+ +.||- ..|+...+..+.+.+.+|.++||||-.
T Consensus 1 Niai~gH~gaGKTtL~EalL~~ag~i~r~G~v~~g~tv~D~~~eE~~R~isi~~~~~~~~w~~~~inliDTPG~~----- 75 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHV----- 75 (270)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEECCCCH-----
T ss_conf 989996899998899999998668735581553897556684889876870733668999899899998696967-----
Q ss_pred CCCCHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 67751234433333----57887520222211013466678998777667505988999974658998899999999998
Q gi|254780648|r 223 GAGIGDRFLKHTER----THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELAT 298 (335)
Q Consensus 223 ~~glG~~FLrhIer----~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~ 298 (335)
.|...+++ ++..|.|||+.+. ...+-+.+.++++. .+.|+++++||+|....+ ..+.+.++++
T Consensus 76 ------DF~~e~~~aL~~~D~AviVv~a~~G-Ve~~T~~~w~~~~~-----~~lP~i~fINKmDre~ad-~~~~l~~i~~ 142 (270)
T cd01886 76 ------DFTIEVERSLRVLDGAVAVFDAVAG-VEPQTETVWRQADR-----YNVPRIAFVNKMDRTGAD-FFRVVEQIRE 142 (270)
T ss_pred ------HHHHHHHHHHHHHCEEEEEEECCCC-HHHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCC-CHHHHHHHHH
T ss_conf ------8899999998775559999846764-42636999988998-----499989999887877887-1668999999
Q ss_pred HCC
Q ss_conf 629
Q gi|254780648|r 299 QCG 301 (335)
Q Consensus 299 ~~~ 301 (335)
.++
T Consensus 143 ~lg 145 (270)
T cd01886 143 KLG 145 (270)
T ss_pred HHC
T ss_conf 858
No 203
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.25 E-value=1.5e-12 Score=95.89 Aligned_cols=53 Identities=34% Similarity=0.586 Sum_probs=44.2
Q ss_pred CEEEEECCCCCCCEEEEEECCCCC-HHHHHHHCCCEECCEEEEECCEEEEEECCCCC
Q ss_conf 112442167775303541014540-12121100000010266329868998226421
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKP-KIADYPFTTLYPNLGIVKEGYKEFILADIPGI 216 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~-kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGl 216 (335)
-|++||+||||||||+|+|.+.+. ++++.|.+|+.-+. +..+ ..+.+.|+||+
T Consensus 119 ~v~vvG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tk~~q~--i~l~-~~i~L~DtPGv 172 (172)
T cd04178 119 TVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQE--VHLD-KKVKLLDSPGI 172 (172)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE--EEEC-CCEEEEECCCC
T ss_conf 999983477425789988734744776599954766799--9958-99899969199
No 204
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.25 E-value=3.2e-11 Score=87.81 Aligned_cols=141 Identities=16% Similarity=0.244 Sum_probs=82.5
Q ss_pred EEEEECCCCCCCEEEEEE---CCCCC-----HH---------H--HHHHC------------CCEECCEEEEECCEEEEE
Q ss_conf 124421677753035410---14540-----12---------1--21100------------000010266329868998
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASV---TRAKP-----KI---------A--DYPFT------------TLYPNLGIVKEGYKEFIL 210 (335)
Q Consensus 162 VglVG~PNaGKSTLln~l---s~ak~-----kI---------a--~ypFT------------T~~P~lGvv~~~~~~~~i 210 (335)
+..+|--.+|||||+-+| |++-+ ++ . +|.|- |.+-..-.+..+..++++
T Consensus 2 ~vv~GHVD~GKSTL~g~LL~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~lD~~~~ErerGiTId~~~~~f~~~~~~~~i 81 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFII 81 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCEEEEEEEEEECCCEEEE
T ss_conf 69997488988899999999829967899999998875416763000343468687882697941058999819926999
Q ss_pred ECCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-
Q ss_conf 226421247311677512344333----335788752022221101346667899877766750598899997465899-
Q gi|254780648|r 211 ADIPGIIKNAHQGAGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVD- 285 (335)
Q Consensus 211 ~D~PGlIegA~~~~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~- 285 (335)
+|+||= .+|.+.. ..+++.+.|||+.+.- .+| + ++.+.. -..|.-+..|+++||||+++
T Consensus 82 iDtPGH-----------~dfi~nmi~gas~aD~ailVVda~~G~-~~Q--T-~eh~~~-~~~lgi~~iIv~vNKmD~v~~ 145 (208)
T cd04166 82 ADTPGH-----------EQYTRNMVTGASTADLAILLVDARKGV-LEQ--T-RRHSYI-LSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred EECCCC-----------HHHHHHHHHHHHHCCEEEEEEECCCCC-CHH--H-HHHHHH-HHHCCCCEEEEEEECCCCCCC
T ss_conf 878962-----------889999999986377479999758887-278--9-999999-997499839999988576899
Q ss_pred -HHHHHHHHHHHH---HHC---CCCEEEEECCCCCCHHHH
Q ss_conf -889999999999---862---994899988878899999
Q gi|254780648|r 286 -SDTLARKKNELA---TQC---GQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 286 -~e~~~~~~~~l~---~~~---~~~vi~ISA~tg~GI~eL 318 (335)
++...++..++. +.. ...++||||++|+||-+-
T Consensus 146 ~e~~f~~i~~~~~~~l~~~~~~~~~~IPiSa~~GdNi~~~ 185 (208)
T cd04166 146 SEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
T ss_conf 9899999999999999974998871998126778887869
No 205
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.24 E-value=6e-11 Score=86.21 Aligned_cols=123 Identities=20% Similarity=0.308 Sum_probs=77.4
Q ss_pred CEEEEECCCCCCCEEEEEE---CCC---CCHH------HHHH------HCCCEECCEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 1124421677753035410---145---4012------1211------00000010266329868998226421247311
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASV---TRA---KPKI------ADYP------FTTLYPNLGIVKEGYKEFILADIPGIIKNAHQ 222 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~l---s~a---k~kI------a~yp------FTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~ 222 (335)
.|||+|-+-|||+||.-++ +++ ..+| .||- ..|+...+..+.+.+.+|.++||||-
T Consensus 1 Ni~iigH~~aGKTtL~E~lL~~~g~i~~~G~V~~g~t~~D~~~~E~~RgiSi~s~~~~~~w~~~~inliDTPG~------ 74 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGY------ 74 (268)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCEEEEEECCEEEEEEECCCC------
T ss_conf 98999089999899999999966996657654589735778788986796751355788889979999869897------
Q ss_pred CCCCHHHHHHHHHHH----HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 677512344333335----7887520222211013466678998777667505988999974658998899999999998
Q gi|254780648|r 223 GAGIGDRFLKHTERT----HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELAT 298 (335)
Q Consensus 223 ~~glG~~FLrhIer~----~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~ 298 (335)
.+|...++|+ +.-|.|||+.+. ...+-+.+.+.+++ .+.|+++++||+|....+ ..+.+.++++
T Consensus 75 -----~DF~~e~~~aL~v~D~Av~Vida~~G-Ve~~T~~~w~~~~~-----~~iP~i~fINKmDr~~ad-~~~~l~~i~~ 142 (268)
T cd04170 75 -----ADFVGETRAALRAADAALVVVSAQSG-VEVGTEKLWEFADE-----AGIPRIIFINKMDRERAD-FDKTLAALQE 142 (268)
T ss_pred -----HHHHHHHHHHHCCCCEEEEEECCCCC-HHHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCC-HHHHHHHHHH
T ss_conf -----57999999984047839999418754-76879999999998-----599989999787878996-4779999999
Q ss_pred HCC
Q ss_conf 629
Q gi|254780648|r 299 QCG 301 (335)
Q Consensus 299 ~~~ 301 (335)
.++
T Consensus 143 ~lg 145 (268)
T cd04170 143 AFG 145 (268)
T ss_pred HHC
T ss_conf 868
No 206
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.24 E-value=1.5e-12 Score=95.95 Aligned_cols=54 Identities=37% Similarity=0.570 Sum_probs=44.1
Q ss_pred ECEEEEECCCCCCCEEEEEECCC-CCHHHHHHHCCCEECCEEEEECCEEEEEECCCCC
Q ss_conf 01124421677753035410145-4012121100000010266329868998226421
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRA-KPKIADYPFTTLYPNLGIVKEGYKEFILADIPGI 216 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~a-k~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGl 216 (335)
-.|++||+||||||||+|+|.+. +.++++.|+||++.+. +..+ ..+.++||||+
T Consensus 101 ~~i~ivG~PNVGKSsliN~L~~~~~~~v~~~pGtTrd~~~--i~~~-~~~~liDTpGi 155 (155)
T cd01849 101 ITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-NKIKLLDTPGI 155 (155)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECEEE--EEEC-CCEEEEECCCC
T ss_conf 0899987777447789999847850626699983835599--9968-99899979299
No 207
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=99.23 E-value=3.8e-11 Score=87.36 Aligned_cols=145 Identities=21% Similarity=0.294 Sum_probs=83.5
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCC---------------HHH----HHHH------------CCCEECCEEEEECCEEE
Q ss_conf 0112442167775303541014540---------------121----2110------------00000102663298689
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKP---------------KIA----DYPF------------TTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~---------------kIa----~ypF------------TT~~P~lGvv~~~~~~~ 208 (335)
--|+++|-=.+|||||+-+|....- +.+ +|.| -|.+--.-.+....+.|
T Consensus 8 l~i~~~GhVD~GKSTL~G~Ll~~~g~v~~~~~~~~~~~~~~~g~~~~~~a~~~D~~~~Er~rGiTidv~~~~f~t~~~~~ 87 (443)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYY 87 (443)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHHHCCCEEEEEEEEEECCCEEE
T ss_conf 59999947798288889999987388468899999888887178720004453077667636710734799994398899
Q ss_pred EEECCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHH---HHHHHHHHHHHHHCCCC-EEEEEEC
Q ss_conf 98226421247311677512344333----3357887520222211013466---67899877766750598-8999974
Q gi|254780648|r 209 ILADIPGIIKNAHQGAGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQ---CILDELSAYNSELRKKI-EIVGLSQ 280 (335)
Q Consensus 209 ~i~D~PGlIegA~~~~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~---~I~~EL~~y~~~L~~Kp-~IIVlNK 280 (335)
+++|.|| | .+|+|.. -.+++.+.|||+........+. ..++.|.. ..++.-+ .|+++||
T Consensus 88 ~iiD~PG-----H------~~fi~nmi~Gas~aD~ailvVdA~~G~~e~gf~~~gQTreH~~i--~~~lgv~~iIVaVNK 154 (443)
T PTZ00141 88 TVIDAPG-----H------RDFIKNMITGTSQADVALLVVPAEVGGFEGAFSKEGQTREHALL--AFTLGVKQIIVGINK 154 (443)
T ss_pred EEEECCC-----H------HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHH--HHHCCCCEEEEEEEE
T ss_conf 9998997-----2------88899999634107758999986778521346667863999999--997399759999996
Q ss_pred CCCCC--HHHHHHHHHHH---HHHCC-----CCEEEEECCCCCCHHH
Q ss_conf 65899--88999999999---98629-----9489998887889999
Q gi|254780648|r 281 IDTVD--SDTLARKKNEL---ATQCG-----QVPFEFSSITGHGIPQ 317 (335)
Q Consensus 281 iDl~~--~e~~~~~~~~l---~~~~~-----~~vi~ISA~tg~GI~e 317 (335)
||+++ ++...++..++ .+..+ .+++||||++|+|+-+
T Consensus 155 mD~v~~~e~~f~~i~~~~~~~l~~~g~~~~~i~~iPiSa~~Gdni~~ 201 (443)
T PTZ00141 155 MDTCDYKEDRYEEIQKEVCGYLKKVGYNAEKVPFVPISGFEGDNMIE 201 (443)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 21566609999999999999999739995666189634124665324
No 208
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.22 E-value=2e-12 Score=95.14 Aligned_cols=52 Identities=33% Similarity=0.469 Sum_probs=35.0
Q ss_pred EEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECCEEEEECCEEEEEECCCCC
Q ss_conf 1244216777530354101454-012121100000010266329868998226421
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNLGIVKEGYKEFILADIPGI 216 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGl 216 (335)
|++||+||||||||+|+|.+.+ ..+++.|.||+... .+.. +..+.++||||+
T Consensus 118 v~ivG~PNVGKSSlIN~L~~~~~~~v~~~pGtTr~~~--~i~~-~~~~~liDTPGI 170 (171)
T cd01856 118 AMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQ--WIKI-SPGIYLLDTPGI 170 (171)
T ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEE--EEEE-CCCEEEEECCCC
T ss_conf 9997379876179999974886388769898532667--9996-899999979988
No 209
>KOG0078 consensus
Probab=99.22 E-value=6.9e-11 Score=85.84 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=109.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE------EEECCE--EEEEECCCCCCCCCCCCCCCHHHHH-H
Q ss_conf 124421677753035410145401212110000001026------632986--8998226421247311677512344-3
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI------VKEGYK--EFILADIPGIIKNAHQGAGIGDRFL-K 232 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv------v~~~~~--~~~i~D~PGlIegA~~~~glG~~FL-r 232 (335)
|-+||-++||||+|+-+++.-... ++..-.+|+ +..++. ...++||.|= .+ ..... .
T Consensus 15 vlliGDs~vGKt~~l~rf~d~~f~------~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQ------er--f~ti~~s 80 (207)
T KOG0078 15 LLLIGDSGVGKTCLLLRFSDDSFN------TSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQ------ER--FRTITTA 80 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC------CCCCCEEEEEEEEEEEEECCEEEEEEEEECCCC------HH--HHHHHHH
T ss_conf 999778987655766654406676------776515878878889983890899999972430------56--7889999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 333357887520222211013466678998777667505988999974658998899-9999999986299489998887
Q gi|254780648|r 233 HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSIT 311 (335)
Q Consensus 233 hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~t 311 (335)
...++..++.|+|++++...+....+.+.++++.++ .-|.++|-||+|+-++... .+.-+.+....+...+.+||++
T Consensus 81 YyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~ 158 (207)
T KOG0078 81 YYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKT 158 (207)
T ss_pred HHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC
T ss_conf 986548249999845257777799999999863788--874898511412101333567999999998498279713367
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 88999999999999985
Q gi|254780648|r 312 GHGIPQILECLHDKIFS 328 (335)
Q Consensus 312 g~GI~eL~~~I~e~L~~ 328 (335)
+.||++....|...+..
T Consensus 159 ~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078 159 NFNIEEAFLSLARDILQ 175 (207)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 99889999999999986
No 210
>KOG0084 consensus
Probab=99.22 E-value=5.7e-11 Score=86.33 Aligned_cols=151 Identities=16% Similarity=0.244 Sum_probs=111.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE------EEECC--EEEEEECCCCCCCCCCCCCCCHHHH---
Q ss_conf 124421677753035410145401212110000001026------63298--6899822642124731167751234---
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI------VKEGY--KEFILADIPGIIKNAHQGAGIGDRF--- 230 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv------v~~~~--~~~~i~D~PGlIegA~~~~glG~~F--- 230 (335)
|-|||-.|||||.|+-+.+. ..|+.++.. ++|| +..+. ..+.|+||.|= .+|
T Consensus 12 iiliGds~VGKtCL~~Rf~~-----~~f~e~~~s-TIGVDf~~rt~e~~gk~iKlQIWDTAGQ-----------ERFrti 74 (205)
T KOG0084 12 IILIGDSGVGKTCLLLRFKD-----DTFTESYIS-TIGVDFKIRTVELDGKTIKLQIWDTAGQ-----------ERFRTI 74 (205)
T ss_pred EEEECCCCCCHHHHHHHHCC-----CCCCHHHCC-EEEEEEEEEEEEECCEEEEEEEEECCCC-----------HHHHHH
T ss_conf 99987789676355566626-----985333232-3126788987555264888876663653-----------777555
Q ss_pred HHHHH-HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH-HHHHHHHHHCCCC-EEEE
Q ss_conf 43333-3578875202222110134666789987776675059889999746589988999-9999999862994-8999
Q gi|254780648|r 231 LKHTE-RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLA-RKKNELATQCGQV-PFEF 307 (335)
Q Consensus 231 LrhIe-r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~-~~~~~l~~~~~~~-vi~I 307 (335)
-.|-. .++.+++|.|+++....+.+..+..|+.+|-. ..-|.++|-||+|+.+..... +..+++....+.+ .+++
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~--~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ET 152 (205)
T KOG0084 75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS--ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLET 152 (205)
T ss_pred HHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCCCCCEEEC
T ss_conf 47661678759999976557776548899998665246--7787688862455186400179999999864298303550
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 888788999999999999985452
Q gi|254780648|r 308 SSITGHGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 308 SA~tg~GI~eL~~~I~e~L~~~r~ 331 (335)
||+...|+++....|...+.+...
T Consensus 153 SAK~~~NVe~~F~~la~~lk~~~~ 176 (205)
T KOG0084 153 SAKDSTNVEDAFLTLAKELKQRKG 176 (205)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 468754799999999999998616
No 211
>PTZ00099 rab6; Provisional
Probab=99.22 E-value=3.9e-11 Score=87.32 Aligned_cols=123 Identities=11% Similarity=0.056 Sum_probs=88.9
Q ss_pred EEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 63298--6899822642124731167751234433333578875202222110134666789987776675059889999
Q gi|254780648|r 201 VKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGL 278 (335)
Q Consensus 201 v~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVl 278 (335)
+..++ ..+.|+||+|- .+=+.|... +...+++++.|.|++++...+.+..+.+|+..... .+-|.++|.
T Consensus 22 i~i~~~~v~l~IWDTAGq----E~f~sl~~~---y~r~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~--~~~~iiLVG 92 (176)
T PTZ00099 22 LYLDEGPVRLQLWDTAGQ----ERFRSLIPS---YIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG--KDVIIALVG 92 (176)
T ss_pred EEECCEEEEEEEEECCCC----CCHHHHHHH---HHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCC--CCCCEEEEE
T ss_conf 999999999999979986----341357688---70798679998504207789999999999998538--877439998
Q ss_pred ECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 74658998899-9999999986299489998887889999999999999854523
Q gi|254780648|r 279 SQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQILECLHDKIFSIRGE 332 (335)
Q Consensus 279 NKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e~L~~~r~e 332 (335)
||+||.+.... .+...++.+..+.+.|.+||++|.||+++.+.|.+.|.+....
T Consensus 93 NK~DL~~~r~V~~ee~~~~A~~~~~~f~EtSAktg~nV~e~F~~la~~i~~~~~~ 147 (176)
T PTZ00099 93 NKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred ECCCHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHC
T ss_conf 5565586168599999999998599999984899949899999999986080202
No 212
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.22 E-value=2.5e-12 Score=94.59 Aligned_cols=55 Identities=33% Similarity=0.474 Sum_probs=44.9
Q ss_pred EEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCC
Q ss_conf 1244216777530354101454-012121100000010266329868998226421247
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKN 219 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIeg 219 (335)
|++||+||||||||+|+|.+.+ .++++.|.+|+..+ .+..+ ..+.+.|+||++.-
T Consensus 121 v~vVG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tr~~q--~i~l~-~~i~llDtPGvl~P 176 (276)
T TIGR03596 121 AMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKLS-DGLELLDTPGILWP 176 (276)
T ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEE--EEEEC-CCEEEECCCCCCCC
T ss_conf 9997279875899999873672587779654210258--99957-97799668874578
No 213
>PRK13768 GTPase; Provisional
Probab=99.21 E-value=2.9e-11 Score=88.14 Aligned_cols=161 Identities=19% Similarity=0.301 Sum_probs=95.0
Q ss_pred EEEEECCCCCCCEEEEEEC-------------CCCCHHHHHHHC------------------CCEECCEEE---------
Q ss_conf 1244216777530354101-------------454012121100------------------000010266---------
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVT-------------RAKPKIADYPFT------------------TLYPNLGIV--------- 201 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls-------------~ak~kIa~ypFT------------------T~~P~lGvv--------- 201 (335)
+=++|.|-+||||+.+++. |-.|.+-+.|+. -+-||=|.+
T Consensus 5 ~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIRd~i~~~dVM~~~~LGPNGali~~~e~l~~~ 84 (253)
T PRK13768 5 VFFLGTAGSGKTTLVGALSDWLEEQGYDVAIVNLDPAVEYLPYKPDIDVREYVSAREIMRKYGLGPNGALIASVDLLLTK 84 (253)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999769975999789866589999886378617899999881989646899999999998
Q ss_pred --------EECCEEEEEECCCCCCCC-CCCCCCCHHHHHHHHHH--HHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHH-H
Q ss_conf --------329868998226421247-31167751234433333--578875202222-1101346667899877766-7
Q gi|254780648|r 202 --------KEGYKEFILADIPGIIKN-AHQGAGIGDRFLKHTER--THVLLHIVSALE-ENVQAAYQCILDELSAYNS-E 268 (335)
Q Consensus 202 --------~~~~~~~~i~D~PGlIeg-A~~~~glG~~FLrhIer--~~vLl~VVD~s~-~d~~~~~~~I~~EL~~y~~-~ 268 (335)
...+..+++.|+||=||= +|.. -+..+++++.+ --+.+|++|+.- .+|..-+-.+ |...+. -
T Consensus 85 ~d~l~~~i~~~~~dY~i~D~PGQiElft~~~--~~~~i~~~L~~~~~~~~v~l~D~~~~~~~~~fiS~~---L~a~s~m~ 159 (253)
T PRK13768 85 AEEIKEEIERLDADYVLVDTPGQMELFAFRE--SGRYLVEKLSSGSKSLSVYLIDAVLAKDPSDFVSLL---LLALSVQL 159 (253)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCEEEEECCH--HHHHHHHHHHCCCCEEEEEEECHHHHCCHHHHHHHH---HHHHHHHH
T ss_conf 9999999851588759982687443222340--799999998636862899984505637887999999---99999999
Q ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHH------H----------------------HHC-CCCEEEEECCCCCCHHHHH
Q ss_conf 5059889999746589988999999999------9----------------------862-9948999888788999999
Q gi|254780648|r 269 LRKKIEIVGLSQIDTVDSDTLARKKNEL------A----------------------TQC-GQVPFEFSSITGHGIPQIL 319 (335)
Q Consensus 269 L~~Kp~IIVlNKiDl~~~e~~~~~~~~l------~----------------------~~~-~~~vi~ISA~tg~GI~eL~ 319 (335)
-.+-|.+.|+||+|+++++...++.+.+ . +.. ....+|+|+.+++|+++|.
T Consensus 160 ~l~lP~inVlsK~Dll~~~~~~~i~~~~~D~~~l~~~l~~~~~~~~~l~~~l~~~l~e~~~~v~~ipvS~~~~eg~~~l~ 239 (253)
T PRK13768 160 RLGLPQIPVLNKIDLLSEEELERIRKWLEDPETLLEELKLDKGVQGDLAEELLSALEESGIPVRVIPVSAKTGEGFEELY 239 (253)
T ss_pred HCCCCEEEEEEHHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 73999799867686278377999999862999999998506115899999999999984666652775689878799999
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q gi|254780648|r 320 ECLHDKIF 327 (335)
Q Consensus 320 ~~I~e~L~ 327 (335)
..|.+.+.
T Consensus 240 ~~I~~~~~ 247 (253)
T PRK13768 240 ALLQEVFC 247 (253)
T ss_pred HHHHHHHC
T ss_conf 99999962
No 214
>PRK00049 elongation factor Tu; Reviewed
Probab=99.20 E-value=6.2e-11 Score=86.09 Aligned_cols=148 Identities=22% Similarity=0.302 Sum_probs=84.8
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCC------HHHHHHH-----------CCCEECCEEEE--ECCEEEEEECCCCCCCCC
Q ss_conf 0112442167775303541014540------1212110-----------00000102663--298689982264212473
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKP------KIADYPF-----------TTLYPNLGIVK--EGYKEFILADIPGIIKNA 220 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~------kIa~ypF-----------TT~~P~lGvv~--~~~~~~~i~D~PGlIegA 220 (335)
-.|+++|-=.+|||||+-+||..-. +-..|.. -|. .++... .+.+.++++|.||
T Consensus 13 ~ni~~~GHVD~GKSTL~g~Lt~~l~~~~g~~~~~~~~~~D~~~eEr~rGiTi--d~~~~~~~t~~~~~~~iD~PG----- 85 (397)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKYGGAEAKAYDQIDNAPEEKARGITI--NTAHVEYETEKRHYAHVDCPG----- 85 (397)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCEE--EEEEEEEECCCCEEEEECCCC-----
T ss_conf 2999991258889999999986666543853100133302576676258169--987999972881499951786-----
Q ss_pred CCCCCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHHHHHHH--
Q ss_conf 11677512344333----335788752022221101346667899877766750598-89999746589988999999--
Q gi|254780648|r 221 HQGAGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKI-EIVGLSQIDTVDSDTLARKK-- 293 (335)
Q Consensus 221 ~~~~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp-~IIVlNKiDl~~~e~~~~~~-- 293 (335)
|+ +|++.. -.+|+.+.|||+.+- +.+ ..++.|.. ..++.-+ .|||+||+|+++++++.+..
T Consensus 86 H~------~fiknmI~Ga~~~D~alLVV~A~~G-~~~---QT~EHl~l--~~~LGv~~~iV~vnK~D~v~~~~~~~~v~~ 153 (397)
T PRK00049 86 HA------DYVKNMITGAAQMDGAILVVSAADG-PMP---QTREHILL--ARQVGVPYIVVFLNKCDMVDDEELLELVEM 153 (397)
T ss_pred HH------HHHHHHHHHHCCCCEEEEEEECCCC-CCH---HHHHHHHH--HHHHCCCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 38------8899987301215679999974888-665---28999999--998099827999986688885999999999
Q ss_pred --HHHHHHC-----CCCEEEEECCCCC----------CHHHHHHHHHHHH
Q ss_conf --9999862-----9948999888788----------9999999999999
Q gi|254780648|r 294 --NELATQC-----GQVPFEFSSITGH----------GIPQILECLHDKI 326 (335)
Q Consensus 294 --~~l~~~~-----~~~vi~ISA~tg~----------GI~eL~~~I~e~L 326 (335)
+++.+.. +.+++++||.++. ++.+|++.+.+.+
T Consensus 154 ~i~~~l~~~~f~~~~ipiv~~S~~~~~~~~~~~~~~~~i~~Ll~~ld~~~ 203 (397)
T PRK00049 154 EVRELLSKYDFPGDDTPIIRGSALKALEEIGDPEWEAKILELMEAVDSYI 203 (397)
T ss_pred HHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 99999984699844476898550031147786531789999999998647
No 215
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=99.20 E-value=2.6e-11 Score=88.42 Aligned_cols=108 Identities=26% Similarity=0.309 Sum_probs=71.1
Q ss_pred EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCCC
Q ss_conf 68998226421247311677512344333335788752022221101346667899877766750598899-99746589
Q gi|254780648|r 206 KEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIV-GLSQIDTV 284 (335)
Q Consensus 206 ~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~II-VlNKiDl~ 284 (335)
+.+-|+||||=+.= .++.=|-|.-|---|.||||+.- +|. |+|-|-=-....+| .|| |+||+|||
T Consensus 71 Y~LNLIDTPGHVDF-------sYEVSRSLAACEGALL~VDA~QG--vEA-QT~aN~YlAlE~dL----eIIPViNKIDLP 136 (598)
T TIGR01393 71 YVLNLIDTPGHVDF-------SYEVSRSLAACEGALLLVDAAQG--VEA-QTLANVYLALENDL----EIIPVINKIDLP 136 (598)
T ss_pred EEEEEECCCCCCCC-------CHHHHHHHHHHCCEEEEEECCCC--HHH-HHHHHHHHHHHCCC----EEEEEECCCCCC
T ss_conf 89964528897212-------73788888871640356141032--358-88999988756187----584778253688
Q ss_pred CHHHHHHHHHHHHHHCCC---CEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 988999999999986299---48999888788999999999999985
Q gi|254780648|r 285 DSDTLARKKNELATQCGQ---VPFEFSSITGHGIPQILECLHDKIFS 328 (335)
Q Consensus 285 ~~e~~~~~~~~l~~~~~~---~vi~ISA~tg~GI~eL~~~I~e~L~~ 328 (335)
.++ .+...+++.+-.+. +.+.+||+||.||++|+++|.+++..
T Consensus 137 ~Ad-pe~v~~eIe~~iGld~~~ai~~SAKtG~Gi~e~LEaIv~~vPp 182 (598)
T TIGR01393 137 SAD-PERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP 182 (598)
T ss_pred CCC-HHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 888-5899998765418896430387503678889998897101810
No 216
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.20 E-value=2.1e-11 Score=88.97 Aligned_cols=160 Identities=23% Similarity=0.223 Sum_probs=94.3
Q ss_pred EEEEEECEEEEECCCCCCCEEEEEE---CCCCCH--HH----HH------HHCCCEECCEEEEE-----CCEEEEEECCC
Q ss_conf 9976301124421677753035410---145401--21----21------10000001026632-----98689982264
Q gi|254780648|r 155 KLKLIADIGIIGLPNAGKSTFLASV---TRAKPK--IA----DY------PFTTLYPNLGIVKE-----GYKEFILADIP 214 (335)
Q Consensus 155 elk~iaDVglVG~PNaGKSTLln~l---s~ak~k--Ia----~y------pFTT~~P~lGvv~~-----~~~~~~i~D~P 214 (335)
+++-|-.+++|.-=-.|||||-.+| |++-.+ .. |+ -.-|..-+--.+.+ ....+-++|||
T Consensus 3 ~~~~IRNf~IiAHIDhGKSTLaDrlL~~tg~i~~~~~~~q~lD~m~~ErERGITIka~~v~~~y~~~~g~~y~lNLIDTP 82 (601)
T PRK05433 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYQLNLIDTP 82 (601)
T ss_pred CHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEEECCC
T ss_conf 33204558999943788888999999970997744323331454155765583697867999988489967999985489
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 21247311677512344333335788752022221101346667899877766750598899997465899889999999
Q gi|254780648|r 215 GIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKN 294 (335)
Q Consensus 215 GlIegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~ 294 (335)
|-+. .+.+.-|-+.-|+-.+.|||++.----+....+..-++ .+-+.|.|+||+|++.++ .+...+
T Consensus 83 GHVD-------F~~EVsRSL~aceGalLlVDa~qGVqaQT~an~~~A~~------~~L~iIpviNKIDlp~Ad-~e~v~~ 148 (601)
T PRK05433 83 GHVD-------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NDLEIIPVLNKIDLPAAD-PERVKQ 148 (601)
T ss_pred CCCC-------CCEEEEEEHHHCCCEEEEEECCCCCCCHHHHHHHHHHH------CCCCEEEEEECCCCCCCC-HHHHHH
T ss_conf 8566-------45045560334072599997687856006999999998------799657778614688899-899999
Q ss_pred HHHHHCC---CCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9998629---948999888788999999999999985
Q gi|254780648|r 295 ELATQCG---QVPFEFSSITGHGIPQILECLHDKIFS 328 (335)
Q Consensus 295 ~l~~~~~---~~vi~ISA~tg~GI~eL~~~I~e~L~~ 328 (335)
++.+..+ .+++.+||++|.|+++|++.|.+.+..
T Consensus 149 qi~~~igl~~~eil~vSAKtG~GV~~lLdaIV~~iP~ 185 (601)
T PRK05433 149 EIEDIIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (601)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf 9998868964777777523388879999999974799
No 217
>PRK12736 elongation factor Tu; Reviewed
Probab=99.19 E-value=8.5e-11 Score=85.27 Aligned_cols=149 Identities=19% Similarity=0.284 Sum_probs=85.6
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCC-----HHHHHHH-----------CCCEECCEEEEECCEEEEEECCCCCCCCCCCC
Q ss_conf 0112442167775303541014540-----1212110-----------00000102663298689982264212473116
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKP-----KIADYPF-----------TTLYPNLGIVKEGYKEFILADIPGIIKNAHQG 223 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~-----kIa~ypF-----------TT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~ 223 (335)
-.|+++|-=.+|||||+.+|+..-. +-..|.. -|.+.-.-.+..+...+.++|.|| |+
T Consensus 13 ~ni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~~~~~~~iD~PG-----H~- 86 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLAERGLAQAKDYASIDAAPEEKARGITINTAHVEYETEKRHYAHVDCPG-----HA- 86 (394)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCEEEEEEEEEECCCEEEEEEECCC-----CH-
T ss_conf 499999512884898998975045450651022223311665562478217841899972883699988897-----25-
Q ss_pred CCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHHHHHHHH----
Q ss_conf 77512344333----335788752022221101346667899877766750598-899997465899889999999----
Q gi|254780648|r 224 AGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKI-EIVGLSQIDTVDSDTLARKKN---- 294 (335)
Q Consensus 224 ~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp-~IIVlNKiDl~~~e~~~~~~~---- 294 (335)
+|++.. -.+|..+.|||+++- +.+ ..++.|.. ..++.-+ .|||+||||+++.+++.+..+
T Consensus 87 -----~fi~nmi~Ga~~~D~alLVV~A~~G-~~~---QT~EHl~l--~~~lgv~~~IV~vnK~D~v~~~~~~~~v~~~i~ 155 (394)
T PRK12736 87 -----DYVKNMITGAAQMDGAILVVAATDG-PMP---QTREHILL--ARQVGVPYIVVFLNKVDLVDDEELLELVEMEVR 155 (394)
T ss_pred -----HHHCCEEEEECCCCEEEEEEECCCC-CHH---HHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf -----4311044435346658999985877-467---79999999--998299915999988789983999999999999
Q ss_pred HHHHHCC-----CCEEEEECCCCC--------CHHHHHHHHHHH
Q ss_conf 9998629-----948999888788--------999999999999
Q gi|254780648|r 295 ELATQCG-----QVPFEFSSITGH--------GIPQILECLHDK 325 (335)
Q Consensus 295 ~l~~~~~-----~~vi~ISA~tg~--------GI~eL~~~I~e~ 325 (335)
.+.+..+ .+++++|+.++. ++.+|++.+.+.
T Consensus 156 ~~l~~~g~~~~~ip~i~~s~~~~~~~~~~~~~~i~~Ll~~ld~~ 199 (394)
T PRK12736 156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY 199 (394)
T ss_pred HHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99987699912060998454361368873577899999999852
No 218
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.19 E-value=3.3e-12 Score=93.87 Aligned_cols=53 Identities=28% Similarity=0.501 Sum_probs=40.6
Q ss_pred CEEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECCEEEEECCEEEEEECCCCC
Q ss_conf 11244216777530354101454-012121100000010266329868998226421
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNLGIVKEGYKEFILADIPGI 216 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGl 216 (335)
.|++||.||||||||+|+|.+.+ ..+++.|.||++-. .+.. +..+.++||||+
T Consensus 103 ~v~ivG~PNVGKSTLIN~L~~~~~~~v~~~pGtTr~~~--~i~~-~~~~~liDTpGi 156 (156)
T cd01859 103 KVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQ--LVKI-TSKIYLLDTPGV 156 (156)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEECCEE--EEEE-CCCEEEEECCCC
T ss_conf 89998147845989999974881377759998070559--9997-998899989099
No 219
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.19 E-value=9e-11 Score=85.11 Aligned_cols=157 Identities=22% Similarity=0.219 Sum_probs=108.8
Q ss_pred ECEEEEECCCCCCCEEEEEECCCC-CHHHHHH--HCCCEECCEEEEECC-----------EEEEEECCCCC---CCCCCC
Q ss_conf 011244216777530354101454-0121211--000000102663298-----------68998226421---247311
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAK-PKIADYP--FTTLYPNLGIVKEGY-----------KEFILADIPGI---IKNAHQ 222 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak-~kIa~yp--FTT~~P~lGvv~~~~-----------~~~~i~D~PGl---IegA~~ 222 (335)
.-++++|.||+|||||++.++..+ .....+| ++|.+-....+..+. ..+.++|+||+ .+....
T Consensus 4 ~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~d~~G~~~~~~~~~~ 83 (186)
T TIGR00231 4 IKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTITGATFQWGYKFNLLDTPGLHRQEDYDAL 83 (186)
T ss_pred EEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHH
T ss_conf 05899734776604555445410120010232333200000011345580234343102427898625771135555445
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH------HHHHHHHHHH
Q ss_conf 6775123443333357887520222211013466678998777667505988999974658998------8999999999
Q gi|254780648|r 223 GAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS------DTLARKKNEL 296 (335)
Q Consensus 223 ~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~------e~~~~~~~~l 296 (335)
......+..+-+.-+++.++++|..+. +..+...+.++... ...|.+++.||+|+.+. .........+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 157 (186)
T TIGR00231 84 RRLYYPEVLSSLEVLDLVILVLDVEDG-LEKDTKEIIHHADK-----YGVPILLVGNKIDLKDEKPGYFVDLKPHLASLF 157 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHH
T ss_conf 433223445444333333322211100-10256778753221-----274169985133655467540100003455555
Q ss_pred HHHCCCC-EEEEECCCCCCHHHHHHHH
Q ss_conf 9862994-8999888788999999999
Q gi|254780648|r 297 ATQCGQV-PFEFSSITGHGIPQILECL 322 (335)
Q Consensus 297 ~~~~~~~-vi~ISA~tg~GI~eL~~~I 322 (335)
.+....+ .+++|+.+..|++.+...+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (186)
T TIGR00231 158 AKLNGEPHFIPLSAETGKGIDSLFGLV 184 (186)
T ss_pred HHHCCCCCEEECCHHHHCCHHHHHHHH
T ss_conf 542366401111001110045566654
No 220
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.18 E-value=2.3e-11 Score=88.70 Aligned_cols=158 Identities=19% Similarity=0.164 Sum_probs=96.2
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEEC---CEEEEEECCCCCCCCCCCCCCCHHHHHH--HH
Q ss_conf 011244216777530354101454012121100000010266329---8689982264212473116775123443--33
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEG---YKEFILADIPGIIKNAHQGAGIGDRFLK--HT 234 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~---~~~~~i~D~PGlIegA~~~~glG~~FLr--hI 234 (335)
.-|.++|.+|||||||++++...... -.|+-|...+..+..... ..++.++||+|..+= +-++ ..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~---------~~~~~~y~ 75 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP-EGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY---------RSLRPEYY 75 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEECCCCCEEECCCCCEEEEEEECCCHHHH---------HHHHHHCC
T ss_conf 79999999999889999999647676-556761454043203622666002676767986999---------99887504
Q ss_pred HHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH-------------HHH---
Q ss_conf 33578875202222-1101346667899877766750598899997465899889999999-------------999---
Q gi|254780648|r 235 ERTHVLLHIVSALE-ENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKN-------------ELA--- 297 (335)
Q Consensus 235 er~~vLl~VVD~s~-~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~-------------~l~--- 297 (335)
..+..++++.|.+. ....+..+.+..+|..... ...|.++|.||+|+.........+. ...
T Consensus 76 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (219)
T COG1100 76 RGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLP 153 (219)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_conf 3897899999762056578899999999987466--88679996976105543013678877532453000222344423
Q ss_pred HHCCCCEEEEECC--CCCCHHHHHHHHHHHHHHH
Q ss_conf 8629948999888--7889999999999999854
Q gi|254780648|r 298 TQCGQVPFEFSSI--TGHGIPQILECLHDKIFSI 329 (335)
Q Consensus 298 ~~~~~~vi~ISA~--tg~GI~eL~~~I~e~L~~~ 329 (335)
.......+.+||. ++.+++++...+...+...
T Consensus 154 ~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 154 EVANPALLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred HHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 3200044324210167878789999999999886
No 221
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.17 E-value=1.8e-10 Score=83.35 Aligned_cols=99 Identities=26% Similarity=0.418 Sum_probs=64.9
Q ss_pred EEEEECCCCCCCCCCCCCCCHHHH--HHHHHH----HHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 899822642124731167751234--433333----578875202222---11013466678998777667505988999
Q gi|254780648|r 207 EFILADIPGIIKNAHQGAGIGDRF--LKHTER----THVLLHIVSALE---ENVQAAYQCILDELSAYNSELRKKIEIVG 277 (335)
Q Consensus 207 ~~~i~D~PGlIegA~~~~glG~~F--LrhIer----~~vLl~VVD~s~---~d~~~~~~~I~~EL~~y~~~L~~Kp~IIV 277 (335)
-+.|+|||| |+ .| || .| +|+-+.|||..+ +...|.+.+|+. .+-|.+|+
T Consensus 616 GLLfIDTPG-----He------aFt~LR--kRGGAlADlAILvVDInEGfkpQT~EA~~ILr~---------~ktPFvVA 673 (1145)
T TIGR00491 616 GLLFIDTPG-----HE------AFTNLR--KRGGALADLAILVVDINEGFKPQTEEALNILRS---------FKTPFVVA 673 (1145)
T ss_pred EEEEEECCC-----CH------HHHCCC--CCCCHHHHHHEEEEEECCCCCHHHHHHHHHHHC---------CCCCEEEE
T ss_conf 015860786-----23------442201--001036301101341026984034899999612---------89872895
Q ss_pred EECCCCCCHHH---------------------HHHHHHHHHHH--C---C---------------CCEEEEECCCCCCHH
Q ss_conf 97465899889---------------------99999999986--2---9---------------948999888788999
Q gi|254780648|r 278 LSQIDTVDSDT---------------------LARKKNELATQ--C---G---------------QVPFEFSSITGHGIP 316 (335)
Q Consensus 278 lNKiDl~~~e~---------------------~~~~~~~l~~~--~---~---------------~~vi~ISA~tg~GI~ 316 (335)
+||+|.++-.. +.+...++.-. + + ..|+||||+|||||.
T Consensus 674 ANKIDrI~GW~~~e~~~fl~~~~kq~~~~~~~l~~~~y~lv~~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tGEGIp 753 (1145)
T TIGR00491 674 ANKIDRIPGWKSHEGRPFLESYEKQEQRVKQNLDKKVYNLVIKKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTGEGIP 753 (1145)
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCCCCHH
T ss_conf 03305588964548851666654111678866887789887302211258871225520000113689886656789748
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999998
Q gi|254780648|r 317 QILECLHDKIF 327 (335)
Q Consensus 317 eL~~~I~e~L~ 327 (335)
||+-.+.=.=+
T Consensus 754 elL~~l~GLAQ 764 (1145)
T TIGR00491 754 ELLLILAGLAQ 764 (1145)
T ss_pred HHHHHHHHHHH
T ss_conf 99999988888
No 222
>KOG0071 consensus
Probab=99.16 E-value=7.5e-11 Score=85.60 Aligned_cols=148 Identities=21% Similarity=0.293 Sum_probs=108.3
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHH-H
Q ss_conf 112442167775303541014540121211000000102----66329868998226421247311677512344333-3
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHT-E 235 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhI-e 235 (335)
|+-.+|+.-|||+|+|.++...+|. |..|++| .|.+.+..|-+.|+.|- ..= ....||- .
T Consensus 19 ~ilmlGLd~aGKTtiLyKLkl~~~~-------~~ipTvGFnvetVtykN~kfNvwdvGGq----d~i----RplWrhYy~ 83 (180)
T KOG0071 19 RILMLGLDAAGKTTILYKLKLGQSV-------TTIPTVGFNVETVTYKNVKFNVWDVGGQ----DKI----RPLWRHYYT 83 (180)
T ss_pred EEEEEECCCCCCEEHHHHHHCCCCC-------CCCCCCCEEEEEEEEEEEEEEEEECCCC----HHH----HHHHHHHCC
T ss_conf 1788812668840034687628976-------4035542047777730068852122671----220----488986356
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH----HHCCCCEEEEEC
Q ss_conf 357887520222211013466678998777--66750598899997465899889999999999----862994899988
Q gi|254780648|r 236 RTHVLLHIVSALEENVQAAYQCILDELSAY--NSELRKKIEIVGLSQIDTVDSDTLARKKNELA----TQCGQVPFEFSS 309 (335)
Q Consensus 236 r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y--~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~----~~~~~~vi~ISA 309 (335)
-+..++||+|.++.| +++.-++||.+. ++++.+-+.+|.+||-|++++....++.+.+. +...|.+.|.||
T Consensus 84 gtqglIFV~Dsa~~d---r~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071 84 GTQGLIFVVDSADRD---RIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred CCCEEEEEEECCCCC---HHHHHHHHHHHHHCCHHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCC
T ss_conf 772599998243210---49999999999857876612058988546655221698998887542312699606603534
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 87889999999999999
Q gi|254780648|r 310 ITGHGIPQILECLHDKI 326 (335)
Q Consensus 310 ~tg~GI~eL~~~I~e~L 326 (335)
.++.|+.|=+.++.+.+
T Consensus 161 ~~gdgL~eglswlsnn~ 177 (180)
T KOG0071 161 LSGDGLKEGLSWLSNNL 177 (180)
T ss_pred CCHHHHHHHHHHHHHHC
T ss_conf 44027888999998552
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=99.16 E-value=1.4e-10 Score=83.92 Aligned_cols=150 Identities=22% Similarity=0.282 Sum_probs=84.6
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCH-----HHHHHHCCCE---------ECCEEE--EECCEEEEEECCCCCCCCCCCC
Q ss_conf 01124421677753035410145401-----2121100000---------010266--3298689982264212473116
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPK-----IADYPFTTLY---------PNLGIV--KEGYKEFILADIPGIIKNAHQG 223 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~k-----Ia~ypFTT~~---------P~lGvv--~~~~~~~~i~D~PGlIegA~~~ 223 (335)
-.|+++|-=++|||||+.+||..-.. ...|..+-.. -.++.. ..+...+.++|.|| |+
T Consensus 13 ini~~~GHVD~GKSTL~g~Lt~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~fet~~~~~~~iD~PG-----He- 86 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPG-----HA- 86 (396)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEEEEECCC-----HH-
T ss_conf 499999426885898999986145452464312212211665674377379856999973980599983686-----68-
Q ss_pred CCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHHHHHHHH----
Q ss_conf 77512344333----335788752022221101346667899877766750598-899997465899889999999----
Q gi|254780648|r 224 AGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKI-EIVGLSQIDTVDSDTLARKKN---- 294 (335)
Q Consensus 224 ~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp-~IIVlNKiDl~~~e~~~~~~~---- 294 (335)
+|++.. -.+|+.+.|||+.+- +.++ .++.|.. ..++.-+ .||++||+|+++.+++.+..+
T Consensus 87 -----~fiknMI~Ga~~aD~alLVV~A~~G-~~~Q---TrEHl~l--~~~lgv~~~iV~vnK~D~v~~~~~~e~v~~~i~ 155 (396)
T PRK12735 87 -----DYVKNMITGAAQMDGAILVVSAADG-PMPQ---TREHILL--ARQVGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred -----HHHHHHHHCCCCCCEEEEEEECCCC-CCHH---HHHHHHH--HHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf -----8776664100425679999986878-7531---6999999--998399858999987588881999999999999
Q ss_pred HHHHHC-----CCCEEEEECCCCC----------CHHHHHHHHHHHH
Q ss_conf 999862-----9948999888788----------9999999999999
Q gi|254780648|r 295 ELATQC-----GQVPFEFSSITGH----------GIPQILECLHDKI 326 (335)
Q Consensus 295 ~l~~~~-----~~~vi~ISA~tg~----------GI~eL~~~I~e~L 326 (335)
++.+.. +.+++++||+.+. ++.+|++.+.+.+
T Consensus 156 ~~l~~~~f~~~~~piv~~S~~~~~~~~~~~~~~~~i~~Ll~~l~~~~ 202 (396)
T PRK12735 156 ELLSKYDFPGDDTPIIRGSALKALEGDAEWIGEAKILELMEALDSYI 202 (396)
T ss_pred HHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99985599966477999673372258874344477999999988526
No 224
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=1.3e-10 Score=84.08 Aligned_cols=149 Identities=21% Similarity=0.265 Sum_probs=84.1
Q ss_pred ECEEEEECCCCCCCEEEEEEC---CCC-C-------HH------HHHH--------------HCCCEECCEEEEECCEEE
Q ss_conf 011244216777530354101---454-0-------12------1211--------------000000102663298689
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVT---RAK-P-------KI------ADYP--------------FTTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls---~ak-~-------kI------a~yp--------------FTT~~P~lGvv~~~~~~~ 208 (335)
-.+.++|-+++|||||+..|. ++= + +- .++. +-|.+-..-.+..+...|
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~ 87 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNF 87 (428)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCCEE
T ss_conf 28999837878703445565777379798999999999986197716899985388667866668997778864377058
Q ss_pred EEECCCCCCCCCCCCCCCHHHHHH-H---HHHHHHHHHHCCCCCCCHHHHH--HHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 982264212473116775123443-3---3335788752022221101346--667899877766750598899997465
Q gi|254780648|r 209 ILADIPGIIKNAHQGAGIGDRFLK-H---TERTHVLLHIVSALEENVQAAY--QCILDELSAYNSELRKKIEIVGLSQID 282 (335)
Q Consensus 209 ~i~D~PGlIegA~~~~glG~~FLr-h---Ier~~vLl~VVD~s~~d~~~~~--~~I~~EL~~y~~~L~~Kp~IIVlNKiD 282 (335)
+|.|.||- .+|.+ + +..+|+-++|||++......-+ .-.-.|-......|.-+..|+++||||
T Consensus 88 tIiDaPGH-----------rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD 156 (428)
T COG5256 88 TIIDAPGH-----------RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMD 156 (428)
T ss_pred EEEECCCH-----------HHHHHHHHCCHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 99607846-----------7789876313313367999998889831014365875167899998569756999997156
Q ss_pred CCC--HHHHHHHHHH---HHHHCCC-----CEEEEECCCCCCHHHHH
Q ss_conf 899--8899999999---9986299-----48999888788999999
Q gi|254780648|r 283 TVD--SDTLARKKNE---LATQCGQ-----VPFEFSSITGHGIPQIL 319 (335)
Q Consensus 283 l~~--~e~~~~~~~~---l~~~~~~-----~vi~ISA~tg~GI~eL~ 319 (335)
+++ ++..+++..+ +.+..++ +.+||||.+|+|+.+--
T Consensus 157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 66627999999999999999971998667707962244677633267
No 225
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.14 E-value=7.9e-12 Score=91.53 Aligned_cols=57 Identities=35% Similarity=0.500 Sum_probs=45.0
Q ss_pred ECEEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCC
Q ss_conf 011244216777530354101454-012121100000010266329868998226421247
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKN 219 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIeg 219 (335)
-+|++||+||||||||||+|.+.+ .+++++|.+|+.-+. +.. ...+.+.|+||++-.
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~--i~~-~~~i~LlDtPGii~~ 190 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQW--IKL-DDGIYLLDTPGIIPP 190 (322)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEECCCEE--EEC-CCCEEEEECCCCCCC
T ss_conf 0899987897648999999862055523799962045168--972-786289738880788
No 226
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2.2e-10 Score=82.75 Aligned_cols=151 Identities=23% Similarity=0.291 Sum_probs=99.2
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCH-------------H--HH---------H---HHCCCE--ECCEEEEECCEEEEE
Q ss_conf 01124421677753035410145401-------------2--12---------1---100000--010266329868998
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPK-------------I--AD---------Y---PFTTLY--PNLGIVKEGYKEFIL 210 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~k-------------I--a~---------y---pFTT~~--P~lGvv~~~~~~~~i 210 (335)
..||+||----|||||..|||....- . || | .+||.. |+.|.-..--+.+.|
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSf 90 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSF 90 (415)
T ss_pred EEEEEEEECCCCHHHHEEHHHCEEEECHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 47623420146624110033133430206887568479840255745757777887662347877778997307999997
Q ss_pred ECCCCC-------CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 226421-------2473116775123443333357887520222211013466678998777667505988999974658
Q gi|254780648|r 211 ADIPGI-------IKNAHQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDT 283 (335)
Q Consensus 211 ~D~PGl-------IegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl 283 (335)
+|-||- ..||+- -|.-+.||.+.+++|-.|-. +.|...+ -+.-|..+||-||+|+
T Consensus 91 VDaPGHe~LMATMLsGAAl--------------MDgAlLvIaANEpcPQPQT~---EHl~Ale-Iigik~iiIvQNKIDl 152 (415)
T COG5257 91 VDAPGHETLMATMLSGAAL--------------MDGALLVIAANEPCPQPQTR---EHLMALE-IIGIKNIIIVQNKIDL 152 (415)
T ss_pred EECCCHHHHHHHHHCCHHH--------------HCCEEEEEECCCCCCCCCHH---HHHHHHH-HHCCCEEEEEECCCCE
T ss_conf 4079669999988602344--------------21538999538989897318---7788776-6265339999523011
Q ss_pred CCHHHHHHHHHHHHHHC------CCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 99889999999999862------9948999888788999999999999985
Q gi|254780648|r 284 VDSDTLARKKNELATQC------GQVPFEFSSITGHGIPQILECLHDKIFS 328 (335)
Q Consensus 284 ~~~e~~~~~~~~l~~~~------~~~vi~ISA~tg~GI~eL~~~I~e~L~~ 328 (335)
++.+...+.++++.+.. +.+++||||..+.|+|.|+++|.+++..
T Consensus 153 V~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 153 VSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred ECHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHCCC
T ss_conf 159998887999999862633479954432564305879999999986899
No 227
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.13 E-value=2.4e-10 Score=82.50 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=70.0
Q ss_pred EEEEECEEEEECCCCCCCEEEEEE-------CCC-CC--------HHHHHH------HCCCEECCEEEEECCEEEEEECC
Q ss_conf 976301124421677753035410-------145-40--------121211------00000010266329868998226
Q gi|254780648|r 156 LKLIADIGIIGLPNAGKSTFLASV-------TRA-KP--------KIADYP------FTTLYPNLGIVKEGYKEFILADI 213 (335)
Q Consensus 156 lk~iaDVglVG~PNaGKSTLln~l-------s~a-k~--------kIa~yp------FTT~~P~lGvv~~~~~~~~i~D~ 213 (335)
+.-+=.|||||-|-|||+||.-+| .++ .+ .+.||- .-|+...+-.+.+.+.+|.++||
T Consensus 7 i~~~RniaIi~H~dAGKTTLtE~lL~~~GaI~~~G~V~~~~~~~~~~sD~~~~E~~RgiSI~ssv~~~e~~~~~iNliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEEC
T ss_conf 76117799993789898999999997467524484663146788646788588997596486151778678989999909
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHH----HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 421247311677512344333335----788752022221101346667899877766750598899997465899
Q gi|254780648|r 214 PGIIKNAHQGAGIGDRFLKHTERT----HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVD 285 (335)
Q Consensus 214 PGlIegA~~~~glG~~FLrhIer~----~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~ 285 (335)
||- .+|...++|+ +.-|.|||+..- +..+-+.+.+..+. .+.|+++.+||+|...
T Consensus 87 PGh-----------~DF~~e~~raL~a~D~Av~Vida~~G-Ve~qTe~~w~~~~~-----~~iP~i~FINKmDR~~ 145 (526)
T PRK00741 87 PGH-----------EDFSEDTYRTLTAVDSALMVIDAAKG-VEPQTRKLMEVCRL-----RDTPIFTFINKLDRDG 145 (526)
T ss_pred CCC-----------HHHHHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCCC
T ss_conf 894-----------67789999999873759999977755-23336899999886-----3998899996567678
No 228
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=99.12 E-value=7.1e-11 Score=85.76 Aligned_cols=145 Identities=17% Similarity=0.277 Sum_probs=81.1
Q ss_pred ECEEEEECCCCCCCEEEEEECCCC----C-----------HHH----HHHHCC----------CEECCEE--EEECCEEE
Q ss_conf 011244216777530354101454----0-----------121----211000----------0001026--63298689
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAK----P-----------KIA----DYPFTT----------LYPNLGI--VKEGYKEF 208 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak----~-----------kIa----~ypFTT----------~~P~lGv--v~~~~~~~ 208 (335)
-.|+++|-=.+|||||+-+|...- . +.+ +|.|-+ +.-.++. +....+.|
T Consensus 8 lni~~~GhVD~GKSTL~G~Ll~~~~~v~~~~l~~~~~~~~~~g~~s~~~a~~~D~~~~Er~rGiTid~~~~~f~t~~~~~ 87 (449)
T PTZ00336 8 MNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAERERGITIDIALWKFESPKSVF 87 (449)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEECCCEEE
T ss_conf 39999927789688889999987488478999999999987187514325451277223228758986799997498489
Q ss_pred EEECCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHH---HHHHHHHHHHHHHCC-CCEEEEEEC
Q ss_conf 98226421247311677512344333----3357887520222211013466---678998777667505-988999974
Q gi|254780648|r 209 ILADIPGIIKNAHQGAGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQ---CILDELSAYNSELRK-KIEIVGLSQ 280 (335)
Q Consensus 209 ~i~D~PGlIegA~~~~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~---~I~~EL~~y~~~L~~-Kp~IIVlNK 280 (335)
+++|.|| | .+|+|.. ..+++-+.|||+.+.....-+. ..++.|.. ..++. +..++++||
T Consensus 88 ~iiD~PG-----H------~~fi~nmi~Gas~aD~aiLVVdA~~G~~e~g~~~~gQTreHl~i--~~~Lgv~~iiV~vNK 154 (449)
T PTZ00336 88 TIIDAPG-----H------RDFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALL--AFTLGVKQMVVCCNK 154 (449)
T ss_pred EEEECCC-----H------HHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCHHHHHH--HHHCCCCEEEEEEEC
T ss_conf 9986894-----6------88899999765006767999987877410355667753999999--986699779999862
Q ss_pred CC--CC--CHHHHHHHHHHHH---HHCC-----CCEEEEECCCCCCHHH
Q ss_conf 65--89--9889999999999---8629-----9489998887889999
Q gi|254780648|r 281 ID--TV--DSDTLARKKNELA---TQCG-----QVPFEFSSITGHGIPQ 317 (335)
Q Consensus 281 iD--l~--~~e~~~~~~~~l~---~~~~-----~~vi~ISA~tg~GI~e 317 (335)
|| ++ +++...++.+++. +..+ .+.+||||++|+|+-+
T Consensus 155 mD~~~v~~~~~r~~~i~~e~~~~l~~~g~~~~~v~~IPiSa~~Gdni~~ 203 (449)
T PTZ00336 155 MDDKTVTYAQSRYDEISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIE 203 (449)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 0156621137899999999999998749990005435420104777532
No 229
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=99.10 E-value=3.4e-10 Score=81.63 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=50.4
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-----CCC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 987776675059889999746589988999999999986-----299--4899988878899999999999998545230
Q gi|254780648|r 261 ELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQ-----CGQ--VPFEFSSITGHGIPQILECLHDKIFSIRGEN 333 (335)
Q Consensus 261 EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~-----~~~--~vi~ISA~tg~GI~eL~~~I~e~L~~~r~e~ 333 (335)
||+..-..+.+-.-++|+||+|+..++.....++..... .+| +|+.+||.+++|+++|.+.|.+....++...
T Consensus 157 eiQ~iKaGImEiaDi~vVNKaD~~~A~~~~~~l~~~l~l~~~~~~~W~p~Vl~tSA~~g~Gi~el~~~I~~~~~~l~~sG 236 (267)
T pfam03308 157 DLQGIKAGLMEIADIYVVNKADLPGAERTARELRSALHLLTPKEAGWRPPVLTTSAVTGEGIDELWDAIEEHREFLTATG 236 (267)
T ss_pred HHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 88898753765354899966764769999999999985179877899999899874788999999999999999999788
No 230
>KOG0462 consensus
Probab=99.08 E-value=1.1e-09 Score=78.53 Aligned_cols=157 Identities=21% Similarity=0.186 Sum_probs=95.2
Q ss_pred EECEEEEECCCCCCCEEEEEE---CCCCCH-HH-----H------HHHCCCEECCEEEEECC---EEEEEECCCCCCCCC
Q ss_conf 301124421677753035410---145401-21-----2------11000000102663298---689982264212473
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASV---TRAKPK-IA-----D------YPFTTLYPNLGIVKEGY---KEFILADIPGIIKNA 220 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~l---s~ak~k-Ia-----~------ypFTT~~P~lGvv~~~~---~~~~i~D~PGlIegA 220 (335)
|-.+++|--=--|||||..+| |.+.++ +. | --.-|..-+...+.+.+ .-+-++||||-+.
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD-- 137 (650)
T KOG0462 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD-- 137 (650)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEECCCCCCC--
T ss_conf 131379998427701689999998287788875566424544566528478751237999758732887505898555--
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC--HHHHHHHHHHHHH
Q ss_conf 11677512344333335788752022221101346667899877766750598899997465899--8899999999998
Q gi|254780648|r 221 HQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVD--SDTLARKKNELAT 298 (335)
Q Consensus 221 ~~~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~--~e~~~~~~~~l~~ 298 (335)
-+.+.-|-+.-|+-.+.|||+++-- .. +++-+--..|.. .-..|.|+||+|++. .+.....+.++..
T Consensus 138 -----Fs~EVsRslaac~G~lLvVDA~qGv-qA--QT~anf~lAfe~---~L~iIpVlNKIDlp~adpe~V~~q~~~lF~ 206 (650)
T KOG0462 138 -----FSGEVSRSLAACDGALLVVDASQGV-QA--QTVANFYLAFEA---GLAIIPVLNKIDLPSADPERVENQLFELFD 206 (650)
T ss_pred -----CCCEEHEHHHHCCCEEEEEECCCCC-HH--HHHHHHHHHHHC---CCEEEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf -----5410001265357159999767681-28--899999999985---974888653157898898999999999866
Q ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 629948999888788999999999999985
Q gi|254780648|r 299 QCGQVPFEFSSITGHGIPQILECLHDKIFS 328 (335)
Q Consensus 299 ~~~~~vi~ISA~tg~GI~eL~~~I~e~L~~ 328 (335)
....+++.+||++|.|+++|+++|.+.+.-
T Consensus 207 ~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462 207 IPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 896124888702575688899999963799
No 231
>pfam00350 Dynamin_N Dynamin family.
Probab=99.08 E-value=3e-11 Score=88.02 Aligned_cols=111 Identities=21% Similarity=0.214 Sum_probs=69.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCC-HHHHHHHCCCEECCEEE---------------------------------------
Q ss_conf 12442167775303541014540-12121100000010266---------------------------------------
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKP-KIADYPFTTLYPNLGIV--------------------------------------- 201 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~-kIa~ypFTT~~P~lGvv--------------------------------------- 201 (335)
|++||--++|||||||+|++.+- -++.-| ||..|..=..
T Consensus 1 ivvvG~~ssGKSSliNALlG~~ilP~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (168)
T pfam00350 1 IAVVGDQSAGKSSVLNALLGRDILPRGPGP-TTRRPLVLRLGEEPGAIPGAVKVEYKDGLKKFEDFSELREEIEDETDKI 79 (168)
T ss_pred CEEECCCCCCHHHHHHHHHCCCCCCCCCCC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 989917889899999999788736889976-5167189995788765554121112333001488999999999755431
Q ss_pred --------------E---ECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf --------------3---29868998226421247311677512344333335788752022221101346667899877
Q gi|254780648|r 202 --------------K---EGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSA 264 (335)
Q Consensus 202 --------------~---~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~ 264 (335)
. .....++|+|+||+.....+..-+-.+ .+.++++++||+|++.+-...+...+.+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~lvDtPGl~s~~~~~~~~t~~---~i~~~d~il~V~~a~~~~~~~~~~~l~~~~d~ 156 (168)
T pfam00350 80 SGTGKGISSEPIILEILSPLVPGLTLVDTPGLDSVAVGDQDLTEE---YIKPADIILAVVDANHDLSTSEALFLAREVDP 156 (168)
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCHHHHHH---HHHHCCEEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 345778777108998368888881898279865444336999999---98538669999846951666199999997399
Q ss_pred HHHHHCCCCEEEEEECC
Q ss_conf 76675059889999746
Q gi|254780648|r 265 YNSELRKKIEIVGLSQI 281 (335)
Q Consensus 265 y~~~L~~Kp~IIVlNKi 281 (335)
...+.+.|+||.
T Consensus 157 -----~~~r~i~V~tk~ 168 (168)
T pfam00350 157 -----NGKRTIGVLTKD 168 (168)
T ss_pred -----CCCEEEEEECCC
T ss_conf -----998389998188
No 232
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.6e-09 Score=77.62 Aligned_cols=149 Identities=22% Similarity=0.221 Sum_probs=97.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHH---HHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHH----
Q ss_conf 124421677753035410145401212---1100000010266329868998226421247311677512344333----
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIAD---YPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHT---- 234 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~---ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhI---- 234 (335)
|+.-|-=--||+||+.++|+....+.. --.||.+--+--....+..+.|+|.||- + +|++.+
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh-----~------~~i~~miag~ 71 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-----P------DFISNLLAGL 71 (447)
T ss_pred EEEEEEEECCCHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEECCCCCCCEEEEECCCC-----H------HHHHHHHHHH
T ss_conf 9974002014302233302553320545661584684205732577773688618984-----7------8899998540
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE-EEEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEECC
Q ss_conf 3357887520222211013466678998777667505988-999974658998899999999998629---948999888
Q gi|254780648|r 235 ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIE-IVGLSQIDTVDSDTLARKKNELATQCG---QVPFEFSSI 310 (335)
Q Consensus 235 er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~-IIVlNKiDl~~~e~~~~~~~~l~~~~~---~~vi~ISA~ 310 (335)
.-.+..++|||+.+.-..+.-+.+ .. .+++..+. ++|+||+|.++++.+.+..+++.+... .++|++||.
T Consensus 72 ~~~d~alLvV~~deGl~~qtgEhL----~i--Ldllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~ 145 (447)
T COG3276 72 GGIDYALLVVAADEGLMAQTGEHL----LI--LDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAK 145 (447)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHH----HH--HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 577458999847557664368899----99--986198732899962234467889999999986502000323011012
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 78899999999999998
Q gi|254780648|r 311 TGHGIPQILECLHDKIF 327 (335)
Q Consensus 311 tg~GI~eL~~~I~e~L~ 327 (335)
+++|+++|++.|.+...
T Consensus 146 ~g~Gi~~Lk~~l~~L~~ 162 (447)
T COG3276 146 TGRGIEELKNELIDLLE 162 (447)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 57877999999987520
No 233
>KOG0094 consensus
Probab=99.06 E-value=4.3e-10 Score=81.03 Aligned_cols=152 Identities=15% Similarity=0.202 Sum_probs=106.0
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE--------EEECCEEEEEECCCCCCCCCCCCCCCHHHH-
Q ss_conf 01124421677753035410145401212110000001026--------632986899822642124731167751234-
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI--------VKEGYKEFILADIPGIIKNAHQGAGIGDRF- 230 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv--------v~~~~~~~~i~D~PGlIegA~~~~glG~~F- 230 (335)
.-|-++|--+|||+||+++..--+- -+|-.+++|+ +..-..++.++||+|= .+|
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~f------d~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ-----------ERFr 85 (221)
T KOG0094 23 YKLVFLGDQSVGKTSLITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-----------ERFR 85 (221)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH------CCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCH-----------HHHH
T ss_conf 7899986676544788889987630------4645654656777888997381789998754467-----------8775
Q ss_pred -H--HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH-HHHHHHCCCCEEE
Q ss_conf -4--33333578875202222110134666789987776675059889999746589988999999-9999862994899
Q gi|254780648|r 231 -L--KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKK-NELATQCGQVPFE 306 (335)
Q Consensus 231 -L--rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~-~~l~~~~~~~vi~ 306 (335)
| ..+..+.+.+.|.|+++.+..++...+.+.+...+.. ..--.++|-||.||.++.+..... +...+..+...+.
T Consensus 86 slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs-~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~e 164 (221)
T KOG0094 86 SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGS-DDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIE 164 (221)
T ss_pred HHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 31055503873799999635640177699999999860688-86599997163124446565388789889872958998
Q ss_pred EECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98887889999999999999854
Q gi|254780648|r 307 FSSITGHGIPQILECLHDKIFSI 329 (335)
Q Consensus 307 ISA~tg~GI~eL~~~I~e~L~~~ 329 (335)
+||+.|+||.+|...|...+...
T Consensus 165 tsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094 165 TSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred ECCCCCCCHHHHHHHHHHHCCCC
T ss_conf 30447998899999999866573
No 234
>KOG0395 consensus
Probab=99.06 E-value=4.5e-09 Score=74.83 Aligned_cols=159 Identities=13% Similarity=0.068 Sum_probs=99.7
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEEC--CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 11244216777530354101454012121100000010266329--8689982264212473116775123443333357
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEG--YKEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~--~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
-|.++|.|++|||+|....-...- +.+|.-|.=+-.--.+..+ ...+.|.|++|--+-.+ +-.. .+...+
T Consensus 5 kvvvlG~~gVGKSal~~qf~~~~f-~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~----~~~~---~~~~~~ 76 (196)
T KOG0395 5 KVVVLGAGGVGKSALTIQFLTGRF-VEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSA----MRDL---YIRNGD 76 (196)
T ss_pred EEEEECCCCCCCCCEEEEECCCCC-CCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHH----HHHH---HHHCCC
T ss_conf 799977898885305789635755-44347976763159999899788999982888534768----8887---755486
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 887520222211013466678998777667505988999974658998899-9999999986299489998887889999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
..+.|.++++....+....+++.+ .--+....-|.++|.||+|+...... .+.-..+......+.+.+||....++++
T Consensus 77 gF~lVysitd~~SF~~~~~l~~~I-~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~ 155 (196)
T KOG0395 77 GFLLVYSITDRSSFEEAKQLREQI-LRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDE 155 (196)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHH-HHCCCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHH
T ss_conf 899999898888999999999999-8640767788799988555323042439999999997099679975144758899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999985
Q gi|254780648|r 318 ILECLHDKIFS 328 (335)
Q Consensus 318 L~~~I~e~L~~ 328 (335)
+...|...+..
T Consensus 156 ~F~~L~r~~~~ 166 (196)
T KOG0395 156 VFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999985
No 235
>CHL00071 tufA elongation factor Tu
Probab=99.05 E-value=6.4e-10 Score=79.97 Aligned_cols=134 Identities=22% Similarity=0.278 Sum_probs=79.3
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHH-----HHHH-----------HCCCEECCEEE--EECCEEEEEECCCCCCCCCC
Q ss_conf 011244216777530354101454012-----1211-----------00000010266--32986899822642124731
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKI-----ADYP-----------FTTLYPNLGIV--KEGYKEFILADIPGIIKNAH 221 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kI-----a~yp-----------FTT~~P~lGvv--~~~~~~~~i~D~PGlIegA~ 221 (335)
-.|+++|-=.+|||||+-+|+...... -.|. .-|. .++.. ..+.+.++++|+|| |
T Consensus 13 vni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTi--d~~~~~~et~~~~~~~iD~PG-----H 85 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAANGGAKGKKYDEIDSAPEEKARGITI--NTAHVEYETENRHYAHVDCPG-----H 85 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCEE--EECEEEEECCCEEEEEEECCC-----H
T ss_conf 999999545883999999986453004513343155323797687369448--802489962875999986796-----7
Q ss_pred CCCCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE-EECCCCCCHHHHHHHHH-H
Q ss_conf 1677512344333----3357887520222211013466678998777667505988999-97465899889999999-9
Q gi|254780648|r 222 QGAGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVG-LSQIDTVDSDTLARKKN-E 295 (335)
Q Consensus 222 ~~~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIV-lNKiDl~~~e~~~~~~~-~ 295 (335)
+ +|++.. -.+|..+.|||+.+-. .+ ..++.|.. ..++.-|.+|| +||||+++.++..+..+ +
T Consensus 86 ~------~fv~nmi~Gas~aD~alLVV~A~~G~-~~---QTkEHl~l--~~~lgV~~~IVavnKmD~v~~~~~~e~i~~~ 153 (409)
T CHL00071 86 A------DYVKNMITGAAQMDGAILVVSAADGP-MP---QTKEHILL--AKQVGVPNIVVFLNKEDQVDDEELLELVELE 153 (409)
T ss_pred H------HHHHHHHHHHCCCCCEEEEEECCCCC-CC---CHHHHHHH--HHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8------99999875230158128999868788-50---04999999--9973999365555567985489999999999
Q ss_pred HH---HHCC-----CCEEEEECCCC
Q ss_conf 99---8629-----94899988878
Q gi|254780648|r 296 LA---TQCG-----QVPFEFSSITG 312 (335)
Q Consensus 296 l~---~~~~-----~~vi~ISA~tg 312 (335)
+. +..+ .+++|+||..+
T Consensus 154 i~~~l~~~g~~~~~i~~vp~sa~~~ 178 (409)
T CHL00071 154 VRELLDKYDFPGDEIPIVAGSALLA 178 (409)
T ss_pred HHHHHHHCCCCCCCCEEEECCHHHH
T ss_conf 9999997399845560896521332
No 236
>KOG0087 consensus
Probab=99.05 E-value=1e-09 Score=78.69 Aligned_cols=152 Identities=20% Similarity=0.212 Sum_probs=103.3
Q ss_pred EEEEECCCCCCCEEEEEECCC------CCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf 124421677753035410145------401212110000001026632986899822642124731167751234433--
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRA------KPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKH-- 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~a------k~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrh-- 233 (335)
|-|+|-|++|||-||++.|+- |+.|+ -.|-|+.+++ ...-....|+||.|- .+| |.
T Consensus 17 iVliGDS~VGKsnLlsRftrnEF~~~SksTIG-vef~t~t~~v---d~k~vkaqIWDTAGQ-----------ERy-rAit 80 (222)
T KOG0087 17 IVLIGDSAVGKSNLLSRFTRNEFSLESKSTIG-VEFATRTVNV---DGKTVKAQIWDTAGQ-----------ERY-RAIT 80 (222)
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCEE-EEEEEEEEEE---CCCEEEEEEECCCCH-----------HHH-CCCC
T ss_conf 99957876553677877433546756666246-8877500235---681788765326114-----------565-0011
Q ss_pred --HHHH-HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEEC
Q ss_conf --3335-788752022221101346667899877766750598899997465899889-999999999862994899988
Q gi|254780648|r 234 --TERT-HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSS 309 (335)
Q Consensus 234 --Ier~-~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA 309 (335)
-.|. -.-+.|.|++.....+....+..||..+.. .+-+.++|-||+||..-.. ..+.-+.+.+..+...+.+||
T Consensus 81 SaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad--~nIvimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSA 158 (222)
T KOG0087 81 SAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSA 158 (222)
T ss_pred CHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCC--CCEEEEEEECCHHHHHCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf 1221344036999950467788889999999985588--77179996122045433464456656689752854787003
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8788999999999999985452
Q gi|254780648|r 310 ITGHGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 310 ~tg~GI~eL~~~I~e~L~~~r~ 331 (335)
+...|+++..+.+...+.....
T Consensus 159 l~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087 159 LDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 4443288999999999999987
No 237
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.04 E-value=2.6e-11 Score=88.35 Aligned_cols=52 Identities=33% Similarity=0.387 Sum_probs=34.1
Q ss_pred CEEEEECCCCCCCEEEEEECC---------CCCHHHHHHHCCCEECCEEEEEC-CEEEEEECCCCC
Q ss_conf 112442167775303541014---------54012121100000010266329-868998226421
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTR---------AKPKIADYPFTTLYPNLGIVKEG-YKEFILADIPGI 216 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~---------ak~kIa~ypFTT~~P~lGvv~~~-~~~~~i~D~PGl 216 (335)
||.+||.||||||||+|+|-. ..+-++.||.||+.+ +... .....+.||||+
T Consensus 129 ~vyvvG~~NvGKSTLiN~Ll~~~~~~~~~~~~~t~S~~PGTTl~~----i~~~l~~~~~l~DtPGi 190 (190)
T cd01855 129 DVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDL----IKIPLGNGKKLYDTPGI 190 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCC----EEEECCCCCEEEECCCC
T ss_conf 579980587546799999863023443456640667999731652----58973999999959599
No 238
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=98.99 E-value=2.3e-09 Score=76.64 Aligned_cols=71 Identities=14% Similarity=0.279 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH--------HCCC--CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8777667505988999974658998899999999998--------6299--48999888788999999999999985452
Q gi|254780648|r 262 LSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELAT--------QCGQ--VPFEFSSITGHGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 262 L~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~--------~~~~--~vi~ISA~tg~GI~eL~~~I~e~L~~~r~ 331 (335)
++..-..+.+-.-++|+||+|............++.. ..+| +|+.+||.+++|+++|.+.|.+....+..
T Consensus 178 ~Q~~K~GImEiaDi~vVNKaDgd~~~~A~~t~~e~~~aL~l~~~~~~~W~ppVl~~SA~~g~GI~eL~~~I~~h~~~l~~ 257 (325)
T PRK09435 178 LQGIKKGIMELADLIVINKADGDNHTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDELWQAIEDHRAALTA 257 (325)
T ss_pred HHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89988657750426899776755658999999999999860788789999998999815899879999999999999997
Q ss_pred H
Q ss_conf 3
Q gi|254780648|r 332 E 332 (335)
Q Consensus 332 e 332 (335)
.
T Consensus 258 s 258 (325)
T PRK09435 258 S 258 (325)
T ss_pred C
T ss_conf 8
No 239
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.98 E-value=1.7e-09 Score=77.32 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 33333578875202222110134666789987776675059889999746589988999999999986299489998887
Q gi|254780648|r 232 KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSIT 311 (335)
Q Consensus 232 rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~t 311 (335)
+.|+++|++++|+|+..+....+. .+.+.|.+ .+||.++|+||+|+.+++...+... +....+.+++.+||.+
T Consensus 8 ~~i~~~D~il~VvDar~p~~~~~~-~l~~~l~~-----~~K~~ilvlNK~Dl~~~~~~~~~~~-~~~~~g~~~i~iSa~~ 80 (156)
T cd01859 8 RIIKESDVVLEVLDARDPELTRSR-KLERYVLE-----LGKKLLIVLNKADLVPKEVLEKWKS-IKESEGIPVVYVSAKE 80 (156)
T ss_pred HHHHHCCEEEEEEECCCCCCCCCH-HHHHHHHH-----CCCCEEEEEECCCCCCHHHHHHHHH-HHHCCCCCEEEEECCC
T ss_conf 999879999999987889998698-99999975-----6993999977555589899999999-9828999737870126
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 88999999999999985
Q gi|254780648|r 312 GHGIPQILECLHDKIFS 328 (335)
Q Consensus 312 g~GI~eL~~~I~e~L~~ 328 (335)
+.|+++|.+.+.+....
T Consensus 81 ~~g~~~L~~~i~~~~~~ 97 (156)
T cd01859 81 RLGTKILRRTIKELAKI 97 (156)
T ss_pred CCCHHHHHHHHHHHHCC
T ss_conf 75799999999986023
No 240
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.98 E-value=2.7e-09 Score=76.21 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 34433333578875202222110134666789987776675059889999746589988999999999986299489998
Q gi|254780648|r 229 RFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 229 ~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
+.-+.++++|++++|+|+..+-...+. +|+.+ +.+||.++|+||+|+.+++...+... +.+..+.+++++|
T Consensus 12 ~~~~~l~~sDlIl~V~DaR~pl~~~~~-----~l~~~---~~~K~~ilV~NK~DL~~~~~~~~~~~-~~~~~~~~~~~~s 82 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNP-----LLEKI---LGNKPRIIVLNKADLADPKKTKKWLK-YFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCCCCH-----HHHHH---HCCCCEEEEEECCCCCCHHHHHHHHH-HHHCCCCCEEEEE
T ss_conf 999999869999999989888876528-----99999---76898899985555589789999999-9980799679984
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8878899999999999998545
Q gi|254780648|r 309 SITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 309 A~tg~GI~eL~~~I~e~L~~~r 330 (335)
|.++.|+++|.+.+.+.+....
T Consensus 83 a~~~~g~~~l~~~i~~~~~~~~ 104 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLKDIE 104 (171)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 2266578999999999735444
No 241
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=98.95 E-value=1.7e-09 Score=77.32 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=90.6
Q ss_pred EEECCCCCCCEEEEEECC-------------CCCHHHHHHHC------------------CCEECCEEE-----------
Q ss_conf 442167775303541014-------------54012121100------------------000010266-----------
Q gi|254780648|r 164 IIGLPNAGKSTFLASVTR-------------AKPKIADYPFT------------------TLYPNLGIV----------- 201 (335)
Q Consensus 164 lVG~PNaGKSTLln~ls~-------------ak~kIa~ypFT------------------T~~P~lGvv----------- 201 (335)
.+|.|-+||||+.++++. -.|..-+.|+. -+-||=+.+
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIrd~i~~~dvM~~~~LGPNGali~~me~l~~~~d 80 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILPLRGRSVYVVNLDPAAENLPYEADIDIRELITVADVMEDYGLGPNGALTVAMDFGRITLD 80 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98989898899999999999977997599978986658999877717874679999998298973899999999999999
Q ss_pred ----E-ECCEEEEEECCCCCCCC-CCCCCCCHHHHHHHHHHHH-HHHHHCCCCC-CCHHHHHHHHHHHHHHHH-HHHCCC
Q ss_conf ----3-29868998226421247-3116775123443333357-8875202222-110134666789987776-675059
Q gi|254780648|r 202 ----K-EGYKEFILADIPGIIKN-AHQGAGIGDRFLKHTERTH-VLLHIVSALE-ENVQAAYQCILDELSAYN-SELRKK 272 (335)
Q Consensus 202 ----~-~~~~~~~i~D~PGlIeg-A~~~~glG~~FLrhIer~~-vLl~VVD~s~-~d~~~~~~~I~~EL~~y~-~~L~~K 272 (335)
. .....+++.|+||=||= +|. ..+.++++++.+.+ +.+|++|+.- .+|..-+..+ |-..+ .--.+-
T Consensus 81 ~l~~~l~~~~~y~l~DtPGQiElf~~~--~~~~~i~~~L~~~~~~~v~l~D~~~~~d~~~fis~~---L~a~s~m~~l~l 155 (234)
T pfam03029 81 WLLEELEYEDDYYLFDTPGQIELFTHW--DSLARGVEALEASRLGAVYLVDTRRLTDPIDFFSGL---LYALSIMLRLGL 155 (234)
T ss_pred HHHHHHCCCCCEEEEECCCCEEEEECC--HHHHHHHHHHHCCCEEEEEEECHHHHCCHHHHHHHH---HHHHHHHHHCCC
T ss_conf 999985255776998369835765400--269999999712873899984257746888899999---999999997489
Q ss_pred CEEEEEECCCCCCH---------------------HHHHHHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 88999974658998---------------------8999999999986299--489998887889999999999999
Q gi|254780648|r 273 IEIVGLSQIDTVDS---------------------DTLARKKNELATQCGQ--VPFEFSSITGHGIPQILECLHDKI 326 (335)
Q Consensus 273 p~IIVlNKiDl~~~---------------------e~~~~~~~~l~~~~~~--~vi~ISA~tg~GI~eL~~~I~e~L 326 (335)
|.+.|+||+|+++. ..+.+.+..+.+.+.. ...++|+.++++++.|+..|.+.+
T Consensus 156 P~vnvlsK~Dl~~~~~~l~~~~d~~~l~~~l~~~~~~L~~~l~~lledf~lv~~f~~ls~~~~~s~~~ll~~ID~a~ 232 (234)
T pfam03029 156 PFVVALNKFDLLSLEFALKWFTDPDDLQLLLELDYRYLNEAIRLALDLFYLVPRFLCDARETGESMEDLLTLIDEAL 232 (234)
T ss_pred CEEEEECCHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 94431000413542445777528788988878879999999999998725736614656886027999999988772
No 242
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=98.95 E-value=5.9e-10 Score=80.18 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=75.2
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE--EEEEC--CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102--66329--868998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG--IVKEG--YKEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG--vv~~~--~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
|.+||-++||||||+.++...+- ..+|+-+|...... .+..+ ...+.++|++|--+-. ...-.++..+
T Consensus 2 ivvvG~~~vGKTSLi~r~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~~~~~~~~~~ 73 (118)
T pfam08477 2 VVVIGDKGSGKSSLLSQLVGGEF-PPEIPEEIQGDTLAVDTLEVDGDTELLHIWDFGGREELK-------FEHIIFMKTA 73 (118)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHHHH-------HHHHHHCCCC
T ss_conf 99999899789999999983988-876667877776888999999928999999899967776-------6665422587
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 788752022221101346667899877766750598899997465
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQID 282 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiD 282 (335)
++++.|.|.++.+..+..+.+.+++......-.+-|.++|.||+|
T Consensus 74 d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D 118 (118)
T pfam08477 74 DAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD 118 (118)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 467899979987899999999999999982099998899996859
No 243
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.94 E-value=3.7e-09 Score=75.33 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=105.0
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCC-HH------HHHHH---CCCEECCEEEEECC-EEEEEECCCCCCCCCCCCCCCHH
Q ss_conf 0112442167775303541014540-12------12110---00000102663298-68998226421247311677512
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKP-KI------ADYPF---TTLYPNLGIVKEGY-KEFILADIPGIIKNAHQGAGIGD 228 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~-kI------a~ypF---TT~~P~lGvv~~~~-~~~~i~D~PGlIegA~~~~glG~ 228 (335)
+-|.++|.-+|||+|++.++|-..+ .+ ..|-- ||..+-.|.+..++ ..+.+.|+||= + -.
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq-----~----RF 81 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQ-----E----RF 81 (187)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEECCCCEEEEECCCCC-----H----HH
T ss_conf 06999844366406678876534562010335555446645506863241137758616899658970-----7----78
Q ss_pred HHH-HH-HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEE
Q ss_conf 344-33-333578875202222110134666789987776675059889999746589988999999999986-299489
Q gi|254780648|r 229 RFL-KH-TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQ-CGQVPF 305 (335)
Q Consensus 229 ~FL-rh-Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~-~~~~vi 305 (335)
+|. .- .+-+.-++.|||.+.+...++.+ |.+.+..- ..-|.+|++||.|+.++...+++.+.+... ...+++
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~~a~~-ii~f~~~~----~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITFHAEE-IIDFLTSR----NPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVI 156 (187)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCHHHHH-HHHHHHHC----CCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEE
T ss_conf 989998748764289999569996467899-99988520----6887899950422577899899999997112798644
Q ss_pred EEECCCCCCHHHHHHHHHHH
Q ss_conf 99888788999999999999
Q gi|254780648|r 306 EFSSITGHGIPQILECLHDK 325 (335)
Q Consensus 306 ~ISA~tg~GI~eL~~~I~e~ 325 (335)
+++|..+++..+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred EEECCCCHHHHHHHHHHHHH
T ss_conf 34424634178999998730
No 244
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.94 E-value=6.6e-09 Score=73.82 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=81.0
Q ss_pred CEEEEECCCCCCCEEEEEECC-CC--C---HHHH----H---H------HCCCEEC-CEEEE----ECCEEEEEECCCCC
Q ss_conf 112442167775303541014-54--0---1212----1---1------0000001-02663----29868998226421
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTR-AK--P---KIAD----Y---P------FTTLYPN-LGIVK----EGYKEFILADIPGI 216 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~-ak--~---kIa~----y---p------FTT~~P~-lGvv~----~~~~~~~i~D~PGl 216 (335)
.||++|---.|||||+.+|-. +. . +... | - .-|+... +.... .....+.++|+||-
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPGH 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 59998278989899999999973445554044421135751646654203558614599998256675057877889872
Q ss_pred CCCCCCCCCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC------CCH
Q ss_conf 247311677512344333----3357887520222211013466678998777667505988999974658------998
Q gi|254780648|r 217 IKNAHQGAGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDT------VDS 286 (335)
Q Consensus 217 IegA~~~~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl------~~~ 286 (335)
. +|...+ .-|+..+.|||+.+-- ..+-+.+.++..+ ...|.++++||+|. +++
T Consensus 82 ~-----------dF~~ev~~al~~~DgailVVDa~eGv-~~qT~~~l~~a~~-----~~l~~ilviNKiDRLi~el~l~p 144 (213)
T cd04167 82 V-----------NFMDEVAAALRLSDGVVLVVDVVEGV-TSNTERLIRHAIL-----EGLPIVLVINKIDRLILELKLPP 144 (213)
T ss_pred H-----------HHHHHHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHHH-----CCCCEEEEEECCCCCHHHCCCCH
T ss_conf 4-----------17999998886377679999878887-5779999999998-----69998999988234314406998
Q ss_pred HHHH----HHHHHHH---HHC-----------CCCEEEEECCCCC--------CHHHHHHHHHHHH
Q ss_conf 8999----9999999---862-----------9948999888788--------9999999999999
Q gi|254780648|r 287 DTLA----RKKNELA---TQC-----------GQVPFEFSSITGH--------GIPQILECLHDKI 326 (335)
Q Consensus 287 e~~~----~~~~~l~---~~~-----------~~~vi~ISA~tg~--------GI~eL~~~I~e~L 326 (335)
++.. ..++++. ... ..+|.+-||+.|+ .+.+|++.|.+.+
T Consensus 145 ~day~~~~~ii~~vn~~i~~~~~~~~~~~~p~~~nV~f~Sa~~gw~ftl~~fa~~y~l~d~i~~~i 210 (213)
T cd04167 145 NDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHHC
T ss_conf 999998999999999999970787351656887969999700052123623211689999999638
No 245
>KOG0098 consensus
Probab=98.93 E-value=2.1e-09 Score=76.86 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=105.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE--EEEECCEE--EEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102--66329868--998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG--IVKEGYKE--FILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG--vv~~~~~~--~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
+=++|-.-||||.||-+.|..+ =+..|+ +|+---.| .++.++++ +.++|+.|- ++.|.|-|+
T Consensus 9 yIiiGd~gVGKSclllrf~~kr-F~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGq------------e~frsv~~s 74 (216)
T KOG0098 9 YIIIGDTGVGKSCLLLRFTDKR-FQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQ------------ESFRSVTRS 74 (216)
T ss_pred EEEECCCCCCHHHHHHHHHCCC-CCCCCC-CEEEEEECEEEEEECCCEEEEEEEECCCC------------HHHHHHHHH
T ss_conf 9998777732889999985157-654534-30224402369888581689999755786------------769998888
Q ss_pred -----HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf -----7887520222211013466678998777667505988999974658998899-9999999986299489998887
Q gi|254780648|r 238 -----HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSIT 311 (335)
Q Consensus 238 -----~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~t 311 (335)
.-.+.|.|.+..+....+..+..++++++. .+-..+++-||+||....+. .+.-+.+.++.+...+..||.+
T Consensus 75 yYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~--~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt 152 (216)
T KOG0098 75 YYRGAAGALLVYDITRRESFNHLTSWLEDARQHSN--ENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKT 152 (216)
T ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHCCCCCCHHHHHHHHHHCCCEEEHHHHHH
T ss_conf 84467623899971306667789999999997267--8838999744144210234658889999997395444124455
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 889999999999999854
Q gi|254780648|r 312 GHGIPQILECLHDKIFSI 329 (335)
Q Consensus 312 g~GI~eL~~~I~e~L~~~ 329 (335)
++|++|....+...+...
T Consensus 153 ~~~VEEaF~nta~~Iy~~ 170 (216)
T KOG0098 153 AENVEEAFINTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 423999999999999999
No 246
>KOG1954 consensus
Probab=98.92 E-value=1.4e-09 Score=77.91 Aligned_cols=131 Identities=24% Similarity=0.349 Sum_probs=92.7
Q ss_pred EEEEECCCCCCCEEEEEECCCC---CHHHHHHHCCCEEC------CEE-------EE-----------------------
Q ss_conf 1244216777530354101454---01212110000001------026-------63-----------------------
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAK---PKIADYPFTTLYPN------LGI-------VK----------------------- 202 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak---~kIa~ypFTT~~P~------lGv-------v~----------------------- 202 (335)
|-|+|.=..||||+|+-|+... ..|++-|-|-..-. -|+ +.
T Consensus 61 ill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csq 140 (532)
T KOG1954 61 ILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQ 140 (532)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 89972466660399999871778755468999753068998558656667862564687751656666799999887733
Q ss_pred E---CCEEEEEECCCCCCCCCCCCCCCHHHHHH----HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 2---98689982264212473116775123443----3333578875202222110134666789987776675059889
Q gi|254780648|r 203 E---GYKEFILADIPGIIKNAHQGAGIGDRFLK----HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEI 275 (335)
Q Consensus 203 ~---~~~~~~i~D~PGlIegA~~~~glG~~FLr----hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~I 275 (335)
. --.+++|+||||+.+|..+....|+.|-. -++||+.|+.|.|+..-|+.+.++.+...|+.. +-+.-
T Consensus 141 mp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~-----EdkiR 215 (532)
T KOG1954 141 LPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH-----EDKIR 215 (532)
T ss_pred CCHHHHHHEEEECCCCCCCCCHHCCCCCCCHHHHHHHHHHHCCEEEEEECHHHCCCCHHHHHHHHHHHCC-----CCEEE
T ss_conf 8756550044423675320122201236780889999997456899972466456667899999986188-----64068
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9997465899889999999999
Q gi|254780648|r 276 VGLSQIDTVDSDTLARKKNELA 297 (335)
Q Consensus 276 IVlNKiDl~~~e~~~~~~~~l~ 297 (335)
||+||+|.++.+++-..+-.+.
T Consensus 216 VVLNKADqVdtqqLmRVyGALm 237 (532)
T KOG1954 216 VVLNKADQVDTQQLMRVYGALM 237 (532)
T ss_pred EEECCCCCCCHHHHHHHHHHHH
T ss_conf 8830324437999999999999
No 247
>KOG0072 consensus
Probab=98.92 E-value=7.5e-09 Score=73.50 Aligned_cols=149 Identities=20% Similarity=0.214 Sum_probs=97.8
Q ss_pred EEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEECCEEEEEECCCCCCCCCCCCCCCHHHHHH-HHHHH
Q ss_conf 2442167775303541014540121211000000102----663298689982264212473116775123443-33335
Q gi|254780648|r 163 GIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEGYKEFILADIPGIIKNAHQGAGIGDRFLK-HTERT 237 (335)
Q Consensus 163 glVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~~~~~~i~D~PGlIegA~~~~glG~~FLr-hIer~ 237 (335)
-+.|.--|||.|++-.+-... + -|..|.+| .+.+.+-.+.+.|+-|= .|- .-+.| .-+.+
T Consensus 22 lilgldGaGkttIlyrlqvge--v-----vttkPtigfnve~v~yKNLk~~vwdLggq---tSi-----rPyWRcYy~dt 86 (182)
T KOG0072 22 LILGLDGAGKTTILYRLQVGE--V-----VTTKPTIGFNVETVPYKNLKFQVWDLGGQ---TSI-----RPYWRCYYADT 86 (182)
T ss_pred EEEECCCCCEEEEEEECCCCC--C-----CCCCCCCCCCCCCCCCCCCCCEEEECCCC---CCC-----CHHHHHHHCCC
T ss_conf 985036777069998712586--4-----34589988680215536655124671586---433-----27788876066
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH----HHCCCCEEEEECCC
Q ss_conf 7887520222211013466678998777--66750598899997465899889999999999----86299489998887
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAY--NSELRKKIEIVGLSQIDTVDSDTLARKKNELA----TQCGQVPFEFSSIT 311 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y--~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~----~~~~~~vi~ISA~t 311 (335)
+.++||||.++.|-+... ..||... .++|.+-..++++||.|........+....+. +..-+.+|..||.+
T Consensus 87 ~avIyVVDssd~dris~a---~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~k 163 (182)
T KOG0072 87 DAVIYVVDSSDRDRISIA---GVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVK 163 (182)
T ss_pred CEEEEEEECCCHHHHHHH---HHHHHHHHCCHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHEEEEEEECCCC
T ss_conf 628999716543443146---89999985548654846999860455213556999999848288750226887601144
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 889999999999999854
Q gi|254780648|r 312 GHGIPQILECLHDKIFSI 329 (335)
Q Consensus 312 g~GI~eL~~~I~e~L~~~ 329 (335)
|+|+++.++++.+.+.+.
T Consensus 164 g~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072 164 GEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred CCCCCHHHHHHHHHHHCC
T ss_conf 667767899998777605
No 248
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.91 E-value=6.8e-09 Score=73.72 Aligned_cols=157 Identities=18% Similarity=0.239 Sum_probs=89.3
Q ss_pred CEEEEECCCCCCCEEEEEECCC---CCHHHH---HHHCCCEECCEEEE-ECCEEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 1124421677753035410145---401212---11000000102663-2986899822642124731167751234433
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRA---KPKIAD---YPFTTLYPNLGIVK-EGYKEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~a---k~kIa~---ypFTT~~P~lGvv~-~~~~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
.||++|-++||||||+||+-+- .+..|. -+ ||..|.. +. .....++++|+||+ |+-. . --.++|+.
T Consensus 3 ~iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~e-TT~~~~~--Y~~p~~pnv~lwDlPG~--Gt~~-f-~~~~Yl~~ 75 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVE-TTMKRTP--YPHPKFPNVTLWDLPGI--GSTA-F-PPDDYLEE 75 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCEE--CCCCCCCCCEEECCCCC--CCCC-C-CHHHHHHH
T ss_conf 799955899868999999868898877758888874-6778620--47999998769728999--9876-5-98999986
Q ss_pred --HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CHH-----------H-HHHHH----H
Q ss_conf --333578875202222110134666789987776675059889999746589-988-----------9-99999----9
Q gi|254780648|r 234 --TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTV-DSD-----------T-LARKK----N 294 (335)
Q Consensus 234 --Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~-~~e-----------~-~~~~~----~ 294 (335)
.++++.++.+.+ ++ .-+.-..|..++.. ..|+..+|-||+|.- .++ + +.++. +
T Consensus 76 ~~~~~yD~fiiiss--~r-f~~nd~~la~~i~~-----~gK~fyfVRsK~D~dl~n~~~~~p~~f~~e~~L~~IR~~c~~ 147 (197)
T cd04104 76 MKFSEYDFFIIISS--TR-FSSNDVKLAKAIQC-----MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLE 147 (197)
T ss_pred CCCCCCCEEEEEEC--CC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 58554578999838--86-41426999999998-----099289998612140005663787665999999999999999
Q ss_pred HHHHHC--CCCEEEEECCC--CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999862--99489998887--889999999999999854523
Q gi|254780648|r 295 ELATQC--GQVPFEFSSIT--GHGIPQILECLHDKIFSIRGE 332 (335)
Q Consensus 295 ~l~~~~--~~~vi~ISA~t--g~GI~eL~~~I~e~L~~~r~e 332 (335)
.+++.. ..+||.||... ......|.+.|.+.|...+..
T Consensus 148 ~L~~~gv~~p~VFLvS~~~~~~yDFp~L~~tl~~~Lp~~kr~ 189 (197)
T cd04104 148 NLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999869999998999379822077689999999980898899
No 249
>TIGR02034 CysN sulfate adenylyltransferase, large subunit; InterPro: IPR011779 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulphation of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS) . In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids . Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules . With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulphurase) and cysC (APS kinase) , .; GO: 0016772 transferase activity transferring phosphorus-containing groups.
Probab=98.90 E-value=4.9e-09 Score=74.63 Aligned_cols=98 Identities=20% Similarity=0.376 Sum_probs=63.3
Q ss_pred ECCEEEEEECCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCEEEE
Q ss_conf 29868998226421247311677512344333----3357887520222211013466678998777667505-988999
Q gi|254780648|r 203 EGYKEFILADIPGIIKNAHQGAGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRK-KIEIVG 277 (335)
Q Consensus 203 ~~~~~~~i~D~PGlIegA~~~~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~-Kp~IIV 277 (335)
.+.++||+||||| || |+=|.. --|++-|.+||+-.-- .+| +=|+ +|=..|+- |..|++
T Consensus 77 T~KRkFIvADTPG-----HE------QYTRNMATGAST~dlAvlLvDAR~Gv-l~Q--TRRH---s~i~sLLGIrh~VlA 139 (411)
T TIGR02034 77 TDKRKFIVADTPG-----HE------QYTRNMATGASTADLAVLLVDARKGV-LEQ--TRRH---SYIASLLGIRHVVLA 139 (411)
T ss_pred CCCCCEEEECCCC-----CC------CCCCCCCHHCCCCCEEEEEEEHHHHH-HHH--HHHH---HHHHHHHCCCEEEEE
T ss_conf 7876178840855-----94------15443000013112466554210213-456--7799---999886045389999
Q ss_pred EECCCCCCHH-----HHHHHHHHHHHHC-CC---CEEEEECCCCCCHH-H
Q ss_conf 9746589988-----9999999999862-99---48999888788999-9
Q gi|254780648|r 278 LSQIDTVDSD-----TLARKKNELATQC-GQ---VPFEFSSITGHGIP-Q 317 (335)
Q Consensus 278 lNKiDl~~~e-----~~~~~~~~l~~~~-~~---~vi~ISA~tg~GI~-e 317 (335)
+|||||++-+ .+.+.+..|.+.+ +. ..+|+||+.|+|+- +
T Consensus 140 VNKmDLvdyd~~vF~~I~~~y~~fa~~L~g~~~~~~iP~SAL~GdNv~y~ 189 (411)
T TIGR02034 140 VNKMDLVDYDEEVFENIKKDYLAFAEQLAGVRDVTFIPLSALKGDNVVYS 189 (411)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEC
T ss_conf 97011147657889999999999998638983479987331368740225
No 250
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=98.89 E-value=1.3e-08 Score=72.11 Aligned_cols=162 Identities=21% Similarity=0.304 Sum_probs=83.2
Q ss_pred EEEEECCCCCCCEEEEEECC------CCCHH-HH---HHHCCCEECCE-EEEEC--CEEEEEECCCCCC--CCCCCCC--
Q ss_conf 12442167775303541014------54012-12---11000000102-66329--8689982264212--4731167--
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTR------AKPKI-AD---YPFTTLYPNLG-IVKEG--YKEFILADIPGII--KNAHQGA-- 224 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~------ak~kI-a~---ypFTT~~P~lG-vv~~~--~~~~~i~D~PGlI--egA~~~~-- 224 (335)
|||=|.|-||||||+++|.. .|+-| |= =|||== -.|| -++.+ ..+-.++-=||.. .=++.|.
T Consensus 41 vG~TG~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPfTGG-siLGDr~Rm~~~asrkqlW~dPg~FIRs~ptrG~lG 119 (333)
T TIGR00750 41 VGITGVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPFTGG-SILGDRLRMQRLASRKQLWTDPGVFIRSMPTRGSLG 119 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH-HHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHH
T ss_conf 7664688885777999998999765976899988797597551-454568877544222233228985676776667525
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCH---------------HHHHHHH--------HHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 751234433333578875202222110---------------1346667--------89987776675059889999746
Q gi|254780648|r 225 GIGDRFLKHTERTHVLLHIVSALEENV---------------QAAYQCI--------LDELSAYNSELRKKIEIVGLSQI 281 (335)
Q Consensus 225 glG~~FLrhIer~~vLl~VVD~s~~d~---------------~~~~~~I--------~~EL~~y~~~L~~Kp~IIVlNKi 281 (335)
||. .+|.-++-|+|+..-|. .+-..++ =++|+..-..+.+---|+|+||.
T Consensus 120 Gls-------~at~~~~~lldA~G~DVI~vETVGVGQSEVdi~~~aDT~v~v~~pg~GDd~Q~iKaG~mEiaDI~VVNKa 192 (333)
T TIGR00750 120 GLS-------KATRELVKLLDAAGYDVILVETVGVGQSEVDIINMADTFVVVTIPGTGDDVQGIKAGVMEIADIYVVNKA 192 (333)
T ss_pred HHH-------HHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHEEEEEEEEECC
T ss_conf 787-------9999999999863898799984157524878873415058985488783466665443023248788168
Q ss_pred CCCCHHH-HHHH--HHHHHHH-------------------------CCC--CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5899889-9999--9999986-------------------------299--48999888788999999999999985452
Q gi|254780648|r 282 DTVDSDT-LARK--KNELATQ-------------------------CGQ--VPFEFSSITGHGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 282 Dl~~~e~-~~~~--~~~l~~~-------------------------~~~--~vi~ISA~tg~GI~eL~~~I~e~L~~~r~ 331 (335)
|..+.++ .... ...+... ..| +++.+||.+|+||+||.+.|.+.-.-++.
T Consensus 193 D~~~a~~v~~~a~~~l~l~~esvqmlsqmthadearvq~G~~~~r~~gW~Ppv~~tsA~~G~Gi~EL~daI~eH~~~l~~ 272 (333)
T TIGR00750 193 DGEGAEEVKTLARLMLALDLESVQMLSQMTHADEARVQKGEIYRREKGWRPPVLKTSAVEGRGIDELWDAIEEHKKFLTE 272 (333)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 87665899999999888888899999865333344430265511010589963887335688716789999999999986
No 251
>KOG0080 consensus
Probab=98.88 E-value=1.6e-09 Score=77.53 Aligned_cols=150 Identities=21% Similarity=0.297 Sum_probs=100.0
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-CEE------EEEC--CEEEEEECCCCCCCCCCCCCCCHHHH--
Q ss_conf 124421677753035410145401212110000001-026------6329--86899822642124731167751234--
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-LGI------VKEG--YKEFILADIPGIIKNAHQGAGIGDRF-- 230 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-lGv------v~~~--~~~~~i~D~PGlIegA~~~~glG~~F-- 230 (335)
|-|||-.-|||||||-+.+... |--++|. +|| +..+ ..++.|+|++|- .+|
T Consensus 14 iLlIGeSGVGKSSLllrFv~~~-------fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGq-----------ErFRt 75 (209)
T KOG0080 14 ILLIGESGVGKSSLLLRFVSNT-------FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQ-----------ERFRT 75 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHCC-------CCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCH-----------HHHHC
T ss_conf 9998168765789999987643-------67667734434578899987582678998743452-----------76611
Q ss_pred HH--HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEE
Q ss_conf 43--333357887520222211013466678998777667505988999974658998899-999999998629948999
Q gi|254780648|r 231 LK--HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEF 307 (335)
Q Consensus 231 Lr--hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~I 307 (335)
|- .-.-+.-++.|.|++.++....+.++.+||..|+.. -+--.++|-||+|.-.+... .+.=..+.+....-.+..
T Consensus 76 LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~ 154 (209)
T KOG0080 76 LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIEC 154 (209)
T ss_pred CCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCC-CCHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHCCEEEEC
T ss_conf 6876745575069999712235677599999988764488-137676542544501202134888789998608278982
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88878899999999999998545
Q gi|254780648|r 308 SSITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 308 SA~tg~GI~eL~~~I~e~L~~~r 330 (335)
||++.+|++...+.+.+.+.+..
T Consensus 155 SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080 155 SAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred CHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 54343018889999999986484
No 252
>KOG1424 consensus
Probab=98.88 E-value=3.4e-10 Score=81.61 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=45.0
Q ss_pred EECEEEEECCCCCCCEEEEEECCC-CCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCC
Q ss_conf 301124421677753035410145-40121211000000102663298689982264212473
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVTRA-KPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNA 220 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls~a-k~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA 220 (335)
..-||+||||||||||+||+|-++ ++.|...|.-|++-+- +. -...+-++|-|||+--.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQT--i~-ls~~v~LCDCPGLVfPS 373 (562)
T KOG1424 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQT--IF-LSPSVCLCDCPGLVFPS 373 (562)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCCEEE--EE-ECCCCEECCCCCCCCCC
T ss_conf 05887524888762777888755744666348987640378--97-07876444788721568
No 253
>PRK10218 GTP-binding protein; Provisional
Probab=98.88 E-value=4e-09 Score=75.11 Aligned_cols=152 Identities=17% Similarity=0.217 Sum_probs=91.9
Q ss_pred EECEEEEECCCCCCCEEEEEE---CCC---CCHHH----HHH------HCCCEECCEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 301124421677753035410---145---40121----211------00000010266329868998226421247311
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASV---TRA---KPKIA----DYP------FTTLYPNLGIVKEGYKEFILADIPGIIKNAHQ 222 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~l---s~a---k~kIa----~yp------FTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~ 222 (335)
|-.||+|.---+|||||..+| |++ +.++. |+- .-|+.-..-.+.+++.++-++||||-+
T Consensus 5 IRNiaIIAHvDhGKTTL~d~lL~~tG~~~~~~~~~~~~mD~~~~ErERGITI~a~~~~~~~~~~~iNiIDTPGH~----- 79 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHA----- 79 (607)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCC-----
T ss_conf 424899975688988999999997289864454112014786889875972623048996087899786599854-----
Q ss_pred CCCCHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCCCHH--HHHHHHHH
Q ss_conf 67751234433333----578875202222110134666-789987776675059889999746589988--99999999
Q gi|254780648|r 223 GAGIGDRFLKHTER----THVLLHIVSALEENVQAAYQC-ILDELSAYNSELRKKIEIVGLSQIDTVDSD--TLARKKNE 295 (335)
Q Consensus 223 ~~glG~~FLrhIer----~~vLl~VVD~s~~d~~~~~~~-I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e--~~~~~~~~ 295 (335)
+|--.+|| |+-.|.|||+++- +..|-+. ++.-|+ ..-|.|+|+||+|.+.++ .....+.+
T Consensus 80 ------DF~gEVeR~L~~~DGalLvVDA~eG-v~pQT~~V~~~Al~------~~l~~IvvINKiDr~~A~~~~V~~ei~d 146 (607)
T PRK10218 80 ------DFGGEVERVMSMVDSVLLVVDAFDG-PMPQTRFVTKKAFA------YGLKPIVVINKVDRPGARPDWVVDQVFD 146 (607)
T ss_pred ------CCHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHH------CCCCEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf ------3014889789766848999978878-62458999999998------7997599721667665535789999998
Q ss_pred H-------HHHCCCCEEEEECCCCC----------CHHHHHHHHHHHHHH
Q ss_conf 9-------98629948999888788----------999999999999985
Q gi|254780648|r 296 L-------ATQCGQVPFEFSSITGH----------GIPQILECLHDKIFS 328 (335)
Q Consensus 296 l-------~~~~~~~vi~ISA~tg~----------GI~eL~~~I~e~L~~ 328 (335)
+ .++...+++..||++|. ++..|++.|.+.+..
T Consensus 147 lfi~L~a~deqld~Pi~~asa~~G~a~~~~~~~~~dl~pLldaIv~~IPa 196 (607)
T PRK10218 147 LFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred HHHCCCCCHHHHCCHHHHHHHHCCEECCCHHHHHHHCCHHHHHHHHHCCC
T ss_conf 87404985677444355655406501268234333136088999854879
No 254
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.88 E-value=3.8e-09 Score=75.26 Aligned_cols=93 Identities=11% Similarity=0.167 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 34433333578875202222110134666789987776675059889999746589988999999999986299489998
Q gi|254780648|r 229 RFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 229 ~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
++-+.|+++|+++.|+|+-. |.... ..+|++|- .+||.++|+||+||++.+...+..+.+.+. +.+++++|
T Consensus 14 ~l~~~l~~~DvileV~DAR~--Pl~~~---n~~l~~~~---~~K~~ilvlNK~DL~~~~~~~~w~~~~~~~-~~~~~~~s 84 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARI--PLSSR---NPMIDEIR---GNKPRLIVLNKADLADPAVTKQWLKYFEQK-GIKALAIN 84 (276)
T ss_pred HHHHHHHHCCEEEEEEECCC--CCCCC---CHHHHHHH---CCCCEEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEEEH
T ss_conf 99999875999999986778--87868---97599986---699679997343459999999999999843-99189864
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8878899999999999998545
Q gi|254780648|r 309 SITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 309 A~tg~GI~eL~~~I~e~L~~~r 330 (335)
|.++.++.++.+.+.+.+.+..
T Consensus 85 a~~~~~~~~l~~~~~~~~~~~~ 106 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred HCCCCCHHHHHHHHHHHHHHHH
T ss_conf 3074538999999999999988
No 255
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=98.87 E-value=3.5e-10 Score=81.56 Aligned_cols=55 Identities=31% Similarity=0.478 Sum_probs=41.3
Q ss_pred ECEEEEECCCCCCCEEEEEECC----C--CCHHHHHHHCCCEECCEEEEEC-CEEEEEECCCCCCC
Q ss_conf 0112442167775303541014----5--4012121100000010266329-86899822642124
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTR----A--KPKIADYPFTTLYPNLGIVKEG-YKEFILADIPGIIK 218 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~----a--k~kIa~ypFTT~~P~lGvv~~~-~~~~~i~D~PGlIe 218 (335)
-||-+||..|||||||||+|-+ . ...++.||.||+.. ++.. +....+.||||++.
T Consensus 163 ~dvyvVG~tNvGKSTLiN~ll~~~~~~~~~iT~S~~PGTTL~~----i~ipl~~~~~l~DTPGi~~ 224 (367)
T PRK13796 163 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK----IEIPLDDGSFLYDTPGIIH 224 (367)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCC----EEEECCCCCEEECCCCCCC
T ss_conf 8589991575758999999998716787731344899863031----7872389856755888667
No 256
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.87 E-value=1e-08 Score=72.68 Aligned_cols=149 Identities=19% Similarity=0.220 Sum_probs=81.2
Q ss_pred CEEEEECCCCCCCEEEEEECCCC----CHHH------HHH------HCCCEE-CCEE---------EEECCEEEEEECCC
Q ss_conf 11244216777530354101454----0121------211------000000-1026---------63298689982264
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAK----PKIA------DYP------FTTLYP-NLGI---------VKEGYKEFILADIP 214 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak----~kIa------~yp------FTT~~P-~lGv---------v~~~~~~~~i~D~P 214 (335)
.||+||--..|||||+.+|.... .+.+ |+- .-|... .+.. .......+.++|+|
T Consensus 2 Ni~iigHvdhGKTTL~D~Ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTIks~~isl~~~~~~~~~~~~~~~~inlIDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCEEECCCHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEECC
T ss_conf 69998668877999999999985984121066346514243342054158622689998603443456886389997288
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC------
Q ss_conf 2124731167751234433333----578875202222110134666789987776675059889999746589------
Q gi|254780648|r 215 GIIKNAHQGAGIGDRFLKHTER----THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTV------ 284 (335)
Q Consensus 215 GlIegA~~~~glG~~FLrhIer----~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~------ 284 (335)
|-. .|...++| |+..+.|||+.+---.+.-+.|+. ..+ ...|.++++||+|.+
T Consensus 82 GH~-----------dF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~-a~~-----~~l~~il~iNKiDRli~el~l 144 (222)
T cd01885 82 GHV-----------DFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-ALK-----ERVKPVLVINKIDRLILELKL 144 (222)
T ss_pred CHH-----------HHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHH-HHH-----CCCCEEEEEECCCCCCHHCCC
T ss_conf 569-----------899999999985681799610457857789999999-998-----599979999890365001179
Q ss_pred CHHHHHHHHHHHHHHC-------------------------CCCEEEEECCCCCCHH--------HHHHHHHHHH
Q ss_conf 9889999999999862-------------------------9948999888788999--------9999999999
Q gi|254780648|r 285 DSDTLARKKNELATQC-------------------------GQVPFEFSSITGHGIP--------QILECLHDKI 326 (335)
Q Consensus 285 ~~e~~~~~~~~l~~~~-------------------------~~~vi~ISA~tg~GI~--------eL~~~I~e~L 326 (335)
++++....+.++.+.. ..+|.+-||+.|++.. .|++.|.+.+
T Consensus 145 ~p~day~~l~~iie~vN~~i~~~~~~~~~~~~~~~~~~~p~~gnV~f~Sa~~Gw~f~l~~fa~ly~ll~~iv~~i 219 (222)
T cd01885 145 SPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIYAVLEMVVKHL 219 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 989999999999999999998723043303553210207777838999832377126754121899999999628
No 257
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.87 E-value=2.8e-10 Score=82.15 Aligned_cols=55 Identities=29% Similarity=0.449 Sum_probs=41.9
Q ss_pred ECEEEEECCCCCCCEEEEEECCC------CCHHHHHHHCCCEECCEEEEEC-CEEEEEECCCCCCC
Q ss_conf 01124421677753035410145------4012121100000010266329-86899822642124
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRA------KPKIADYPFTTLYPNLGIVKEG-YKEFILADIPGIIK 218 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~a------k~kIa~ypFTT~~P~lGvv~~~-~~~~~i~D~PGlIe 218 (335)
-||=+||.+|||||||||+|... ...++.||.||+.. ++.. +....+.||||++.
T Consensus 155 ~dvyvvG~tNvGKSTliN~Ll~~~~~~~~~~T~S~~PGTTL~~----i~i~l~~~~~i~DTPGi~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL----IEIPLDDGHSLYDTPGIIN 216 (360)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCC----EEEECCCCCEEECCCCCCC
T ss_conf 9589991686658999999987616777723645899853330----7875389955745776557
No 258
>PRK13351 elongation factor G; Reviewed
Probab=98.86 E-value=2.9e-08 Score=69.92 Aligned_cols=110 Identities=19% Similarity=0.266 Sum_probs=70.9
Q ss_pred EECEEEEECCCCCCCEEEEEEC---CC---CCHHH------HH------HHCCCEECCEEEEECCEEEEEECCCCCCCCC
Q ss_conf 3011244216777530354101---45---40121------21------1000000102663298689982264212473
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVT---RA---KPKIA------DY------PFTTLYPNLGIVKEGYKEFILADIPGIIKNA 220 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls---~a---k~kIa------~y------pFTT~~P~lGvv~~~~~~~~i~D~PGlIegA 220 (335)
|=.||+||---+||+||.-+|- ++ .-+|. || -..|.....-.+.+.+..+.++|+||-+
T Consensus 8 IRNi~IiaHvd~GKTTL~d~Ll~~~g~i~~~g~v~~g~t~~D~~~~E~eRgITikss~~sl~~~~~~iNlIDTPGHv--- 84 (687)
T PRK13351 8 IRNIGIMAHIDAGKTTLTERILFYTGKIHKMGSVEDGNTVSDWMPQEQERGISIESAAATCDWKNHRINLIDTPGHI--- 84 (687)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCC---
T ss_conf 30899991799898999999999749987587154787447882999974987762159998899899998097974---
Q ss_pred CCCCCCHHHHHH----HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 116775123443----33335788752022221101346667899877766750598899997465899
Q gi|254780648|r 221 HQGAGIGDRFLK----HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVD 285 (335)
Q Consensus 221 ~~~~glG~~FLr----hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~ 285 (335)
+|.- .+.=||..|.|||+.+- +..+-+.+.+++.+ ...|.++++||+|...
T Consensus 85 --------DF~~Ev~~aLr~~DgallVVDaveG-v~~qT~~v~r~a~~-----~~lp~il~iNK~DR~~ 139 (687)
T PRK13351 85 --------DFTGEVERSLRVLDGAVVVIDAVTG-VQPQTETVWEQADK-----YKIPRLIFINKMDRVG 139 (687)
T ss_pred --------CHHHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCCC
T ss_conf --------3099999999987868999978999-86889999999998-----7998599997977899
No 259
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.86 E-value=6.2e-09 Score=73.99 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=42.5
Q ss_pred HHCCCCEEEEEECCCCCCHHHHHHHH-HHH------HHHCCC--CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 75059889999746589988999999-999------986299--48999888788999999999999985452
Q gi|254780648|r 268 ELRKKIEIVGLSQIDTVDSDTLARKK-NEL------ATQCGQ--VPFEFSSITGHGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 268 ~L~~Kp~IIVlNKiDl~~~e~~~~~~-~~l------~~~~~~--~vi~ISA~tg~GI~eL~~~I~e~L~~~r~ 331 (335)
.+.+---++|+||.|...++.....+ ..+ ....+| +++.+||.+++|+++|.+.|.+.......
T Consensus 186 GimEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 186 GIMEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred HHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 1465403356725672658999999999997511454236888864676413577879999999999999985
No 260
>pfam04548 AIG1 AIG1 family. Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
Probab=98.84 E-value=1.6e-08 Score=71.56 Aligned_cols=159 Identities=18% Similarity=0.108 Sum_probs=98.5
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHH--HHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH--
Q ss_conf 12442167775303541014540121--21100000010266329868998226421247311677512344333335--
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIA--DYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERT-- 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa--~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~-- 237 (335)
|-|+|...+|||+..|+|-+.+.=.. +..-.|.....+.-..++.+++++||||+.+..... .+..++|.||
T Consensus 3 ivLlGktG~GKSstgNtILG~~~F~s~~~~~~vT~~c~~~~~~~~gr~v~ViDTPgl~~~~~~~----~~~~~ei~~~~~ 78 (200)
T pfam04548 3 IVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTWDGRIINVIDTPGLFDLSVSN----DFISKEIIRCLL 78 (200)
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCCCCCCCH----HHHHHHHHHHHH
T ss_conf 9997999984365576617975335789888874136899999899689999786635767786----999999999998
Q ss_pred ------HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH-----HHHHHCCCCEEE
Q ss_conf ------788752022221101346667899877766750598899997465899889999999-----999862994899
Q gi|254780648|r 238 ------HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKN-----ELATQCGQVPFE 306 (335)
Q Consensus 238 ------~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~-----~l~~~~~~~vi~ 306 (335)
+++|+|++.. +-..++-.++..-.+.|.++.. +-.||+++-.|.+..+.+.+.+. .+++.... .
T Consensus 79 l~~pGpHa~LLVi~~~-rfT~ee~~~v~~i~~~FGe~~~-~~tIVLFT~~D~L~~~si~~~i~~~~~~~Lq~li~~---~ 153 (200)
T pfam04548 79 LAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKIL-DYMIVVFTRKDDLEDDSLDDYLSDGCPEFLKEVLRT---A 153 (200)
T ss_pred HCCCCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHH-HHEEEEEECHHHCCCCCHHHHHHHCCHHHHHHHHHH---C
T ss_conf 5589985799998668-8888999999999999757868-009999978021499979999872273999999987---7
Q ss_pred EECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98887889999999999999854
Q gi|254780648|r 307 FSSITGHGIPQILECLHDKIFSI 329 (335)
Q Consensus 307 ISA~tg~GI~eL~~~I~e~L~~~ 329 (335)
-......-+.+|++.|.+++.+.
T Consensus 154 ~~~~~~~QV~eLL~kIe~mv~eN 176 (200)
T pfam04548 154 DGEEKEEQVQQLLALVEAIVKEN 176 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 88545799999999999999974
No 261
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.84 E-value=1.2e-08 Score=72.20 Aligned_cols=156 Identities=25% Similarity=0.244 Sum_probs=88.6
Q ss_pred EECEEEEECCCCCCCEEEEEE---CCCC------CHHHH------HHHCCCEECCEEEEE-----CCEEEEEECCCCCCC
Q ss_conf 301124421677753035410---1454------01212------110000001026632-----986899822642124
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASV---TRAK------PKIAD------YPFTTLYPNLGIVKE-----GYKEFILADIPGIIK 218 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~l---s~ak------~kIa~------ypFTT~~P~lGvv~~-----~~~~~~i~D~PGlIe 218 (335)
|-...+|--=--|||||-.+| |++- .++=| --.-|..-+--.+.+ ....+-++||||-+.
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 23227999842782048899999846767678888752213467662845873278999994799779999727998443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 73116775123443333357887520222211013466678998777667505988999974658998899999999998
Q gi|254780648|r 219 NAHQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELAT 298 (335)
Q Consensus 219 gA~~~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~ 298 (335)
=+. +.-|.+.-|.--+.|||++.. ++. +++-+--..++.+| ..+-|+||+||+.++- +....++.+
T Consensus 89 FsY-------EVSRSLAACEGalLvVDAsQG--veA-QTlAN~YlAle~~L---eIiPViNKIDLP~Adp-ervk~eIe~ 154 (603)
T COG0481 89 FSY-------EVSRSLAACEGALLVVDASQG--VEA-QTLANVYLALENNL---EIIPVLNKIDLPAADP-ERVKQEIED 154 (603)
T ss_pred EEE-------EEHHHHHHCCCCEEEEECCCC--HHH-HHHHHHHHHHHCCC---EEEEEEECCCCCCCCH-HHHHHHHHH
T ss_conf 677-------761337637771899987655--378-89999999987696---7997532256887897-899999998
Q ss_pred HCC---CCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 629---948999888788999999999999985
Q gi|254780648|r 299 QCG---QVPFEFSSITGHGIPQILECLHDKIFS 328 (335)
Q Consensus 299 ~~~---~~vi~ISA~tg~GI~eL~~~I~e~L~~ 328 (335)
..+ ...+.+||++|.|++++++.|.+.+..
T Consensus 155 ~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 155 IIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred HHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 709895200467634689979999999962898
No 262
>KOG1532 consensus
Probab=98.82 E-value=2.9e-08 Score=69.95 Aligned_cols=164 Identities=22% Similarity=0.351 Sum_probs=91.5
Q ss_pred EEEEECCCCCCCEEEEEEC-------------CCCCHHHHHHHC------------------CCEECCEEE---------
Q ss_conf 1244216777530354101-------------454012121100------------------000010266---------
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVT-------------RAKPKIADYPFT------------------TLYPNLGIV--------- 201 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls-------------~ak~kIa~ypFT------------------T~~P~lGvv--------- 201 (335)
+-.||..-+||+|++.+|. |-.|.|-+-||- -+-||=|++
T Consensus 22 ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~tk 101 (366)
T KOG1532 22 ILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFATK 101 (366)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99994477884139999999986236998088678888548886677566543099999983889986403358999987
Q ss_pred --------E--ECCEEEEEECCCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHCCCCC-CCHHHHH-HHHHHHHHHHH
Q ss_conf --------3--29868998226421247---31167751234433333578875202222-1101346-66789987776
Q gi|254780648|r 202 --------K--EGYKEFILADIPGIIKN---AHQGAGIGDRFLKHTERTHVLLHIVSALE-ENVQAAY-QCILDELSAYN 266 (335)
Q Consensus 202 --------~--~~~~~~~i~D~PGlIeg---A~~~~glG~~FLrhIer~~vLl~VVD~s~-~d~~~~~-~~I~~EL~~y~ 266 (335)
+ .+..+++++||||-||- ++.|.=+ .+-|... ---+++||||... .+|..-. .++..-=-.|-
T Consensus 102 ~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsII-te~lass-~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk 179 (366)
T KOG1532 102 FDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSII-TETLASS-FPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK 179 (366)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCH-HHHHHHC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 89999999974220477997488806899842785015-8667613-985999994477678841699889999999986
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHH---HHHC------------------------CCCEEEEECCCCCCHHHHH
Q ss_conf 675059889999746589988999999999---9862------------------------9948999888788999999
Q gi|254780648|r 267 SELRKKIEIVGLSQIDTVDSDTLARKKNEL---ATQC------------------------GQVPFEFSSITGHGIPQIL 319 (335)
Q Consensus 267 ~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l---~~~~------------------------~~~vi~ISA~tg~GI~eL~ 319 (335)
.+-|.|+|+||+|+.+.+-..++...+ ++.. ....+.+||.+|+|.++++
T Consensus 180 ---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~ 256 (366)
T KOG1532 180 ---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFF 256 (366)
T ss_pred ---CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHH
T ss_conf ---26876999714344561889999999999999997630326677665479899999831755777404578678899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999998545
Q gi|254780648|r 320 ECLHDKIFSIR 330 (335)
Q Consensus 320 ~~I~e~L~~~r 330 (335)
.++.+.+.+..
T Consensus 257 ~av~~~vdEy~ 267 (366)
T KOG1532 257 TAVDESVDEYE 267 (366)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 263
>KOG0394 consensus
Probab=98.81 E-value=6.9e-09 Score=73.68 Aligned_cols=157 Identities=14% Similarity=0.140 Sum_probs=105.0
Q ss_pred CEEEEECCCCCCCEEEEEECCCC------CHHHHHHHCCCEECCEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 11244216777530354101454------01212110000001026632986--89982264212473116775123443
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAK------PKIADYPFTTLYPNLGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLK 232 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak------~kIa~ypFTT~~P~lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLr 232 (335)
-|-++|-|-+|||||+|...+.+ .-|+. .|-|.+ +..+++ .++|+||.|= ..=..||..|-|
T Consensus 11 KViiLGDsGVGKtSLmn~yv~~kF~~qykaTIga-dFltKe-----v~Vd~~~vtlQiWDTAGQ----ERFqsLg~aFYR 80 (210)
T KOG0394 11 KVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGA-DFLTKE-----VQVDDRSVTLQIWDTAGQ----ERFQSLGVAFYR 80 (210)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEEE-----EEECCEEEEEEEEECCCH----HHHHHCCCCEEC
T ss_conf 9999379984478999999888888874320001-103227-----998676999998733117----776314641124
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH-HH-CCCCEEEEEECCCCCCHH---HHHHHHHHHHHHC-CCCEEE
Q ss_conf 33335788752022221101346667899877766-75-059889999746589988---9999999999862-994899
Q gi|254780648|r 233 HTERTHVLLHIVSALEENVQAAYQCILDELSAYNS-EL-RKKIEIVGLSQIDTVDSD---TLARKKNELATQC-GQVPFE 306 (335)
Q Consensus 233 hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~-~L-~~Kp~IIVlNKiDl~~~e---~~~~~~~~l~~~~-~~~vi~ 306 (335)
-++..+.|.|+......+.+..+++|+-.+.. .- ..=|.||+-||+|+.+.. ...+....+.+.. +.+.|.
T Consensus 81 ---gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfE 157 (210)
T KOG0394 81 ---GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFE 157 (210)
T ss_pred ---CCCEEEEEECCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEHHHHHHHHHHCCCCEEEE
T ss_conf ---77547898326864665118789999987468799775667997551147777501201889999998659950687
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 988878899999999999998545
Q gi|254780648|r 307 FSSITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 307 ISA~tg~GI~eL~~~I~e~L~~~r 330 (335)
+||+...|+++..+.+.......-
T Consensus 158 tSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394 158 TSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 102434468999999999998612
No 264
>KOG0093 consensus
Probab=98.79 E-value=2.5e-08 Score=70.32 Aligned_cols=171 Identities=20% Similarity=0.183 Sum_probs=114.5
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE------EEECC--EE
Q ss_conf 67610136775302689999976301124421677753035410145401212110000001026------63298--68
Q gi|254780648|r 136 QAPYYANPGILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI------VKEGY--KE 207 (335)
Q Consensus 136 ~~P~~~~~G~~G~~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv------v~~~~--~~ 207 (335)
+.|+.+++...-+.+.+.. -+-++|-..+||+||+.+-....-.+|- ...+|+ |...+ -.
T Consensus 4 ~~~~~~~~~s~dqnFDymf------KlliiGnssvGKTSfl~ry~ddSFt~af------vsTvGidFKvKTvyr~~kRik 71 (193)
T KOG0093 4 GDSYGASKDSIDQNFDYMF------KLLIIGNSSVGKTSFLFRYADDSFTSAF------VSTVGIDFKVKTVYRSDKRIK 71 (193)
T ss_pred CCCCCCCCCCCCCCCCCEE------EEEEECCCCCCCHHHHHHHHCCCCCCCE------EEEEEEEEEEEEEEECCCEEE
T ss_conf 6567776456642310102------6899726876621355776065544000------466311378867651464778
Q ss_pred EEEECCCCCCCCCCCCCCCHHHHHHH-----HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 99822642124731167751234433-----3335788752022221101346667899877766750598899997465
Q gi|254780648|r 208 FILADIPGIIKNAHQGAGIGDRFLKH-----TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQID 282 (335)
Q Consensus 208 ~~i~D~PGlIegA~~~~glG~~FLrh-----Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiD 282 (335)
+.++|+.|. +-+|. ++-+..++.+.|.++++....++.+...++.|+- .+-|.|+|.||||
T Consensus 72 lQiwDTagq------------EryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw--~naqvilvgnKCD 137 (193)
T KOG0093 72 LQIWDTAGQ------------ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSW--DNAQVILVGNKCD 137 (193)
T ss_pred EEEEECCCC------------HHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHEEEEC--CCCEEEEEECCCC
T ss_conf 898716651------------03567778876146459999854787888989989887503431--6861899804557
Q ss_pred CCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8998899-9999999986299489998887889999999999999854523
Q gi|254780648|r 283 TVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQILECLHDKIFSIRGE 332 (335)
Q Consensus 283 l~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e~L~~~r~e 332 (335)
+-++..+ .+.-..+.++++.+.|..||+.+.|++.+.+.+...+.+-..|
T Consensus 138 md~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmse 188 (193)
T KOG0093 138 MDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMSE 188 (193)
T ss_pred CCCCEEEEHHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 743200127888899998484775513302666999999999999877655
No 265
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.78 E-value=2.8e-08 Score=70.00 Aligned_cols=144 Identities=19% Similarity=0.278 Sum_probs=83.4
Q ss_pred ECEEEEECCCCCCCEEEEEEC---CC---------------CCHH---HHHHHC------------CCEECCEEEEECCE
Q ss_conf 011244216777530354101---45---------------4012---121100------------00001026632986
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVT---RA---------------KPKI---ADYPFT------------TLYPNLGIVKEGYK 206 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls---~a---------------k~kI---a~ypFT------------T~~P~lGvv~~~~~ 206 (335)
--+..+|-=-+|||||+-+|- +. .-+- -+|.|- |.+--.-.+..+.+
T Consensus 28 l~~v~~GhVD~GKSTl~GrlL~~~~~v~~~~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~ERe~GiTIdva~~~f~t~~r 107 (475)
T PRK05124 28 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKR 107 (475)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCEEEEEEEEEECCCE
T ss_conf 79999905579778888999998199788999999999998288777222444205998898669716956789953876
Q ss_pred EEEEECCCCCCCCCCCCCCCHHHHHHH----HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 899822642124731167751234433----3335788752022221101346667899877766750598899997465
Q gi|254780648|r 207 EFILADIPGIIKNAHQGAGIGDRFLKH----TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQID 282 (335)
Q Consensus 207 ~~~i~D~PGlIegA~~~~glG~~FLrh----Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiD 282 (335)
+|+++|.|| | .+|.|. .-.+++-+.|||+... ..+| .++.+.. -.-|.=+..|+++||||
T Consensus 108 ~~~i~DaPG-----H------~~f~~NMitGas~aD~aiLvVdA~~G-~~~Q---TreH~~i-~~llGI~~iIVaVNKMD 171 (475)
T PRK05124 108 KFIIADTPG-----H------EQYTRNMATGASTCDLAILLIDARKG-VLDQ---TRRHSFI-ATLLGIKHLVVAVNKMD 171 (475)
T ss_pred EEEEEECCC-----H------HHHHHHHHHHHHHCCEEEEEEECCCC-CHHH---HHHHHHH-HHHCCCCEEEEEEECHH
T ss_conf 899973796-----3------87788898888767889999989889-4788---8999999-98659985999985043
Q ss_pred CCC--HHHHHHHHHHH---HHHCC----CCEEEEECCCCCCHHHHH
Q ss_conf 899--88999999999---98629----948999888788999999
Q gi|254780648|r 283 TVD--SDTLARKKNEL---ATQCG----QVPFEFSSITGHGIPQIL 319 (335)
Q Consensus 283 l~~--~e~~~~~~~~l---~~~~~----~~vi~ISA~tg~GI~eL~ 319 (335)
+++ ++...++..++ .+..+ ..++||||++|+||-+..
T Consensus 172 lV~~~~~~f~~I~~e~~~~l~~~g~~~~v~~IPISal~GdNIv~~S 217 (475)
T PRK05124 172 LVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (475)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 1354399999999999999997499888507754134576762156
No 266
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.78 E-value=2.2e-08 Score=70.67 Aligned_cols=88 Identities=22% Similarity=0.235 Sum_probs=65.6
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 78875202222110134666789987776675059889999746589988999999999986299489998887889999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
|++++|+|+..+-...+.+ +.+.|. ....||.++|+||+|+++.+...+...++.+..+..++++||.++.++++
T Consensus 1 D~il~VvDaR~pl~~~~~~-~~~~l~----~~~~K~~ilvlNK~Dl~~~~~~~~w~~~~~~~~~~~~~~~S~~~~~~~~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRSPD-IERVLI----KEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEECCCCCCCCCHH-HHHHHH----HCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHH
T ss_conf 9899999687999988999-999998----65899489997673458989999999999962998516711026745688
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999998545
Q gi|254780648|r 318 ILECLHDKIFSIR 330 (335)
Q Consensus 318 L~~~I~e~L~~~r 330 (335)
+.+.+.+.+....
T Consensus 76 ~~~~~~~~~~~~~ 88 (155)
T cd01849 76 KESAFTKQTNSNL 88 (155)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999998715666
No 267
>KOG0074 consensus
Probab=98.78 E-value=3.4e-09 Score=75.59 Aligned_cols=148 Identities=22% Similarity=0.260 Sum_probs=98.5
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEE-CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102----6632-986899822642124731167751234433333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKE-GYKEFILADIPGIIKNAHQGAGIGDRFLKHTER 236 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~-~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer 236 (335)
++++|.-||||+|||..|++..|.- +.|.-| .+.+ ....+.+.|+.|= +|.--..-..-|.
T Consensus 20 illlGldnAGKTT~LKqL~sED~~h-------ltpT~GFn~k~v~~~g~f~LnvwDiGGq-------r~IRpyWsNYyen 85 (185)
T KOG0074 20 ILLLGLDNAGKTTFLKQLKSEDPRH-------LTPTNGFNTKKVEYDGTFHLNVWDIGGQ-------RGIRPYWSNYYEN 85 (185)
T ss_pred EEEEECCCCCCHHHHHHHCCCCHHH-------CCCCCCCCEEEEEECCCEEEEEEECCCC-------CCCCHHHHHHHHC
T ss_conf 9997227776130888871378333-------1566885247876247078888852786-------6554456655530
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH----HHCCCCEEEEECC
Q ss_conf 57887520222211013466678998777--66750598899997465899889999999999----8629948999888
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAY--NSELRKKIEIVGLSQIDTVDSDTLARKKNELA----TQCGQVPFEFSSI 310 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y--~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~----~~~~~~vi~ISA~ 310 (335)
.+.|+||||.+++...+ .+..||... ..++.+-|..|-.||-|++.+...+++...+. +..-|.+-..||+
T Consensus 86 vd~lIyVIDS~D~krfe---E~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csal 162 (185)
T KOG0074 86 VDGLIYVIDSTDEKRFE---EISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSAL 162 (185)
T ss_pred CCEEEEEEECCCHHHHH---HHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCHHHHHHHCCHHHHHHCEEEEEECCCC
T ss_conf 55489998477367689---988999998523122000010012256787634267887745600220104773317654
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 7889999999999999
Q gi|254780648|r 311 TGHGIPQILECLHDKI 326 (335)
Q Consensus 311 tg~GI~eL~~~I~e~L 326 (335)
+.+|+..=.+++...+
T Consensus 163 s~eg~~dg~~wv~sn~ 178 (185)
T KOG0074 163 SLEGSTDGSDWVQSNP 178 (185)
T ss_pred CCCCCCCCCHHHHCCC
T ss_conf 5567667404554499
No 268
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=98.78 E-value=3.4e-08 Score=69.49 Aligned_cols=92 Identities=12% Similarity=0.166 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 34433333578875202222110134666789987776675059889999746589988999999999986299489998
Q gi|254780648|r 229 RFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 229 ~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
+.-+.++++|+++.|+|+-. |.... ..+|+.| +.+||+++|+||+|+++.+...+..+.+.+ .+.+++++|
T Consensus 17 ~l~~~l~~~DvileV~DAR~--Pl~~~---n~~l~~~---~~~K~~ilvlNK~DL~~~~~~~~w~~~~~~-~~~~~~~~s 87 (282)
T PRK09563 17 EIKENLKKVDVVIEVLDARI--PLSSE---NPMIDKI---IGNKPRLLVLNKSDLADPEVTKKWIEYFEE-QGVKALAIN 87 (282)
T ss_pred HHHHHHHHCCEEEEEEECCC--CCCCC---CHHHHHH---HCCCCEEEEEECCCCCCHHHHHHHHHHHHH-CCCCEEEEE
T ss_conf 99999876999999976547--76758---8759999---768976999755548899999999999970-499569974
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 887889999999999999854
Q gi|254780648|r 309 SITGHGIPQILECLHDKIFSI 329 (335)
Q Consensus 309 A~tg~GI~eL~~~I~e~L~~~ 329 (335)
|.++.++..+.+.+.+.+.+.
T Consensus 88 a~~~~~~~~l~~~~~~~~~~~ 108 (282)
T PRK09563 88 AKEGQGVKKILKAAKKLGKEK 108 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
T ss_conf 667433889999999999998
No 269
>PRK12740 elongation factor G; Reviewed
Probab=98.76 E-value=5.1e-08 Score=68.42 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=62.9
Q ss_pred CCCCCCCEEEEEE---CCCC---CHHH------HH------HHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHH
Q ss_conf 1677753035410---1454---0121------21------100000010266329868998226421247311677512
Q gi|254780648|r 167 LPNAGKSTFLASV---TRAK---PKIA------DY------PFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGD 228 (335)
Q Consensus 167 ~PNaGKSTLln~l---s~ak---~kIa------~y------pFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~ 228 (335)
---+|||||.-+| |++- -+|. || -.-|+....-.+.+.+..|.++|+||-+
T Consensus 3 Hvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~ss~~s~~~~~~~iNlIDTPGHv----------- 71 (670)
T PRK12740 3 HSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISIQSAATTCEWKGHKINIIDTPGHV----------- 71 (670)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCC-----------
T ss_conf 998888899999999659987576143897146780999973997322138898899899999297975-----------
Q ss_pred HHHHHHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 34433333----5788752022221101346667899877766750598899997465899
Q gi|254780648|r 229 RFLKHTER----THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVD 285 (335)
Q Consensus 229 ~FLrhIer----~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~ 285 (335)
+|.-+++| ||.-|.|||+.+- +..+-+.+.+++.+ ...|.++++||+|.+.
T Consensus 72 DF~~EV~~aLrv~DgAvlvVDaveG-V~~qT~~v~r~a~~-----~~lp~ilvINKiDr~~ 126 (670)
T PRK12740 72 DFTGEVERALRVLDGAVVVVCAVGG-VEVQTETVWRYAEE-----YGVPRIAFVNKLDRAG 126 (670)
T ss_pred CHHHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCCC
T ss_conf 1489999999986868999978999-73789999999998-----7999699997978999
No 270
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.75 E-value=2.7e-08 Score=70.15 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 34433333578875202222110134666789987776675059889999746589988999999999986299489998
Q gi|254780648|r 229 RFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 229 ~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
++.|-||+||++++|+|+-.+-...+ ..+.+-|.+ .-.+||.++|+||+|+++.+......+.+.+..+...+..|
T Consensus 1 ql~~~i~~aD~vl~V~DaR~p~ss~n-~~l~~~lr~---~~~~K~~i~VlNK~Dl~~~~~~~~w~~~l~~~~~~~~~~~s 76 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRC-KHVEEYLKK---EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHAS 76 (157)
T ss_pred CHHHHHHHCCEEEEEEECCCCCCCCC-HHHHHHHHH---CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 98897875999999988988888789-899999875---37999789999894479878999999986488973999953
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q ss_conf 8878899999999999998
Q gi|254780648|r 309 SITGHGIPQILECLHDKIF 327 (335)
Q Consensus 309 A~tg~GI~eL~~~I~e~L~ 327 (335)
+....+...|.+.+.+...
T Consensus 77 ~~~~~~~~~l~~~l~~~~~ 95 (157)
T cd01858 77 INNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 2386468999999998765
No 271
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.75 E-value=3.8e-08 Score=69.22 Aligned_cols=143 Identities=17% Similarity=0.298 Sum_probs=84.0
Q ss_pred CEEEEECCCCCCCEEEEEE---CCCCC------------HHH------HHHH------------CCCEECCEEEEECCEE
Q ss_conf 1124421677753035410---14540------------121------2110------------0000010266329868
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASV---TRAKP------------KIA------DYPF------------TTLYPNLGIVKEGYKE 207 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~l---s~ak~------------kIa------~ypF------------TT~~P~lGvv~~~~~~ 207 (335)
-+..+|-=-.|||||+-+| |++=+ +.+ +|.| -|.+--.-.+....++
T Consensus 9 ~~~~~G~VD~GKSTliGrlL~dt~~i~~d~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~EreqGiTIDva~~~F~t~~r~ 88 (613)
T PRK05506 9 RFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFSTPKRK 88 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCEEEEEEEEEECCCEE
T ss_conf 89999366797888988999981996789999999999981898886035442148888985597168567788438705
Q ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCEEEEEECCC
Q ss_conf 998226421247311677512344333----3357887520222211013466678998777667505-98899997465
Q gi|254780648|r 208 FILADIPGIIKNAHQGAGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRK-KIEIVGLSQID 282 (335)
Q Consensus 208 ~~i~D~PGlIegA~~~~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~-Kp~IIVlNKiD 282 (335)
|+++|+||- .+|.|.. ..+++-+.|||+...- .+| +-++ .|-..|+. +..|+++||||
T Consensus 89 ~~i~DaPGH-----------~~y~rNMitgAs~ad~AilliDa~~G~-~~Q--TrrH---~~i~~llGI~~iivaVNKMD 151 (613)
T PRK05506 89 FIVADTPGH-----------EQYTRNMATGASTADLAIILVDARKGV-LTQ--TRRH---SFIASLLGIRHIVLAVNKMD 151 (613)
T ss_pred EEEECCCCH-----------HHHHHHHHHHHHHCCEEEEEEECCCCC-HHH--HHHH---HHHHHHCCCCEEEEEEECCC
T ss_conf 999428967-----------989989998786538799999888795-155--1899---99998729875999985201
Q ss_pred CCC--HHHHHHHHHH---HHHHCC---CCEEEEECCCCCCHHHHHH
Q ss_conf 899--8899999999---998629---9489998887889999999
Q gi|254780648|r 283 TVD--SDTLARKKNE---LATQCG---QVPFEFSSITGHGIPQILE 320 (335)
Q Consensus 283 l~~--~e~~~~~~~~---l~~~~~---~~vi~ISA~tg~GI~eL~~ 320 (335)
+++ ++...++..+ +.+..+ ..++||||++|+||-..-+
T Consensus 152 lV~y~~~~f~~I~~~~~~~~~~l~~~~~~~IPISAl~GDNVv~~S~ 197 (613)
T PRK05506 152 LVDYDQEVFDRIVADYLAFAAKLGLTDVTFIPISALKGDNVVTRSA 197 (613)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCC
T ss_conf 2478199999999999999965799887599673574874767887
No 272
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.74 E-value=2.7e-08 Score=70.15 Aligned_cols=138 Identities=17% Similarity=0.245 Sum_probs=87.8
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 11244216777530354101454012121100000010266329868998226421247311677512344333335788
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVL 240 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vL 240 (335)
-+++||.-.+||+||++++-+.... -..---|++.++- .+|+||..- +.+-|=+..+--...+++|
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l---------ykKTQAve~~d~~--~IDTPGEy~---~~~~~Y~aL~tt~~dadvi 68 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL---------YKKTQAVEFNDKG--DIDTPGEYF---EHPRWYHALITTLQDADVI 68 (148)
T ss_pred EEEEECCCCCCCHHHHHHHHCCHHH---------HCCCCEEECCCCC--CCCCCHHHH---HHHHHHHHHHHHHHCCCEE
T ss_conf 0687514565731678886160332---------1000013304755--658806665---2467899998876113325
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 7520222211013466678998777667---5059889999746589988999999999986299489998887889999
Q gi|254780648|r 241 LHIVSALEENVQAAYQCILDELSAYNSE---LRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 241 l~VVD~s~~d~~~~~~~I~~EL~~y~~~---L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
++|-.+.+. .. .|.+. ...||.|-|++|+||++.+.+....+.+.+..-.++|.+||+...|+++
T Consensus 69 ~~v~~and~--~s----------~f~p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~iF~~s~~d~~gv~~ 136 (148)
T COG4917 69 IYVHAANDP--ES----------RFPPGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEE 136 (148)
T ss_pred EEEECCCCC--CC----------CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf 543002684--44----------488421344666558998603466467689999999974875268872558311999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780648|r 318 ILECLHD 324 (335)
Q Consensus 318 L~~~I~e 324 (335)
|++.+..
T Consensus 137 l~~~L~~ 143 (148)
T COG4917 137 LVDYLAS 143 (148)
T ss_pred HHHHHHH
T ss_conf 9999974
No 273
>KOG0091 consensus
Probab=98.74 E-value=4.1e-08 Score=69.01 Aligned_cols=150 Identities=21% Similarity=0.293 Sum_probs=106.6
Q ss_pred EEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECCEE------EE-ECC--EEEEEECCCCCCCCCCCCCCCHHHH---
Q ss_conf 44216777530354101454-01212110000001026------63-298--6899822642124731167751234---
Q gi|254780648|r 164 IIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNLGI------VK-EGY--KEFILADIPGIIKNAHQGAGIGDRF--- 230 (335)
Q Consensus 164 lVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~lGv------v~-~~~--~~~~i~D~PGlIegA~~~~glG~~F--- 230 (335)
+||-.-+|||+||...|..| +.+ .+|.+|| ++ .++ -++.++||+|- .+|
T Consensus 13 vigdstvgkssll~~ft~gkfael-------sdptvgvdffarlie~~pg~riklqlwdtagq-----------erfrsi 74 (213)
T KOG0091 13 VIGDSTVGKSSLLRYFTEGKFAEL-------SDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ-----------ERFRSI 74 (213)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC-------CCCCCCHHHHHHHHHCCCCCEEEEEEEECCCH-----------HHHHHH
T ss_conf 983775248889999833766556-------79853367898987347886789987302056-----------888887
Q ss_pred HHHHHHHHH-HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE-EEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEE
Q ss_conf 433333578-87520222211013466678998777667505988-999974658998899-999999998629948999
Q gi|254780648|r 231 LKHTERTHV-LLHIVSALEENVQAAYQCILDELSAYNSELRKKIE-IVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEF 307 (335)
Q Consensus 231 LrhIer~~v-Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~-IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~I 307 (335)
-|.-.|..+ .+.|.|.++....+..+.+..|-..+-.. -.|+. .+|-.|+||....+. .+..+++.+..+...+..
T Consensus 75 tksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~-P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVET 153 (213)
T KOG0091 75 TKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQG-PDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVET 153 (213)
T ss_pred HHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCCHHHHCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 899865464169999635446677789999999985389-9705999852431012211113999999999659458983
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8887889999999999999854523
Q gi|254780648|r 308 SSITGHGIPQILECLHDKIFSIRGE 332 (335)
Q Consensus 308 SA~tg~GI~eL~~~I~e~L~~~r~e 332 (335)
||.++.|+++-...|.+.++..-.+
T Consensus 154 Sak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091 154 SAKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 1457876899999999999999861
No 274
>KOG0095 consensus
Probab=98.73 E-value=5e-08 Score=68.50 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=106.6
Q ss_pred EEEEEECEEEEECCCCCCCEEEEEECCCC--CHHHHHHHCCC--EECCEEEEECC--EEEEEECCCCCCCCCCCCCCCHH
Q ss_conf 99763011244216777530354101454--01212110000--00102663298--68998226421247311677512
Q gi|254780648|r 155 KLKLIADIGIIGLPNAGKSTFLASVTRAK--PKIADYPFTTL--YPNLGIVKEGY--KEFILADIPGIIKNAHQGAGIGD 228 (335)
Q Consensus 155 elk~iaDVglVG~PNaGKSTLln~ls~ak--~kIa~ypFTT~--~P~lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~ 228 (335)
++|.+--|-|||..-+||+.|.++.|..- |-- ..|+ .-.+-+|+.++ -++.|+|++|- .
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgq----gatigvdfmiktvev~gekiklqiwdtagq-----------e 67 (213)
T KOG0095 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQ----GATIGVDFMIKTVEVNGEKIKLQIWDTAGQ-----------E 67 (213)
T ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHCCCCCCCC----CCEEEEEEEEEEEEECCEEEEEEEEECCCH-----------H
T ss_conf 4202678999735776733004455226789998----766423379999998780899998413256-----------8
Q ss_pred HHHHHH-----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH-HHHHHHHHHCCC
Q ss_conf 344333-----33578875202222110134666789987776675059889999746589988999-999999986299
Q gi|254780648|r 229 RFLKHT-----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLA-RKKNELATQCGQ 302 (335)
Q Consensus 229 ~FLrhI-----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~-~~~~~l~~~~~~ 302 (335)
+| |.| ..+..|+.|.|++.....+-+-.+..|+++|... +--.|+|-||+|+.+..+.. .+-+++.+....
T Consensus 68 rf-rsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~--kvlkilvgnk~d~~drrevp~qigeefs~~qdm 144 (213)
T KOG0095 68 RF-RSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANN--KVLKILVGNKIDLADRREVPQQIGEEFSEAQDM 144 (213)
T ss_pred HH-HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHC--CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88-888998864116489998534574310139999999998506--427876146656123333058887888775556
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4899988878899999999999998545
Q gi|254780648|r 303 VPFEFSSITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 303 ~vi~ISA~tg~GI~eL~~~I~e~L~~~r 330 (335)
-.+..||+.-+|++.|...+.-.|-+..
T Consensus 145 yfletsakea~nve~lf~~~a~rli~~a 172 (213)
T KOG0095 145 YFLETSAKEADNVEKLFLDLACRLISEA 172 (213)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 6532020001039999999999998888
No 275
>KOG0461 consensus
Probab=98.72 E-value=2.3e-08 Score=70.48 Aligned_cols=154 Identities=22% Similarity=0.362 Sum_probs=89.9
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHH--HHH------------HCCCEECCE-EE-EECCEEEEEECCCCCCCCCCCC
Q ss_conf 0112442167775303541014540121--211------------000000102-66-3298689982264212473116
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIA--DYP------------FTTLYPNLG-IV-KEGYKEFILADIPGIIKNAHQG 223 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa--~yp------------FTT~~P~lG-vv-~~~~~~~~i~D~PGlIegA~~~ 223 (335)
-.+|++|--.+||+||-++||.--..-| ..| |.|..--.+ .+ .-..-||+++|-||- ||.
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH---asL- 83 (522)
T KOG0461 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH---ASL- 83 (522)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCEEEEEECCCH---HHH-
T ss_conf 2443574025764899999986314033224875310462674122044135723378766412699717970---889-
Q ss_pred CCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH----H
Q ss_conf 77512344333----33578875202222110134666-789987776675059889999746589988999999----9
Q gi|254780648|r 224 AGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQC-ILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKK----N 294 (335)
Q Consensus 224 ~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~-I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~----~ 294 (335)
.|.| .--|+.+.|||+....--+..+. |. .+++-++.+||+||+|++.+..+...+ +
T Consensus 84 -------IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLii-------g~~~c~klvvvinkid~lpE~qr~ski~k~~k 149 (522)
T KOG0461 84 -------IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLII-------GELLCKKLVVVINKIDVLPENQRASKIEKSAK 149 (522)
T ss_pred -------HHHHHCCHHHHEEEEEEEEHHCCCCCCCCHHHHH-------HHHHCCCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf -------9999710120013467886101766652145443-------76644626999950122653024567899999
Q ss_pred HHHHHC-------CCCEEEEECCCC----CCHHHHHHHHHHHHHHHHH
Q ss_conf 999862-------994899988878----8999999999999985452
Q gi|254780648|r 295 ELATQC-------GQVPFEFSSITG----HGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 295 ~l~~~~-------~~~vi~ISA~tg----~GI~eL~~~I~e~L~~~r~ 331 (335)
.+++.+ +.+++++||+.| +++.+|++.|.+.+.+-.+
T Consensus 150 k~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461 150 KVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 999778745768888526764378754066789999999976247776
No 276
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=98.70 E-value=5.3e-08 Score=68.32 Aligned_cols=127 Identities=18% Similarity=0.214 Sum_probs=81.9
Q ss_pred EEEEECCCCCCCEEEEEEC-CCCCHHHHHHHCCCEECCEEEEE-CCEEEEEECCCCC---CCCCCCCCCCHHHHHHH-HH
Q ss_conf 1244216777530354101-45401212110000001026632-9868998226421---24731167751234433-33
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVT-RAKPKIADYPFTTLYPNLGIVKE-GYKEFILADIPGI---IKNAHQGAGIGDRFLKH-TE 235 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls-~ak~kIa~ypFTT~~P~lGvv~~-~~~~~~i~D~PGl---IegA~~~~glG~~FLrh-Ie 235 (335)
|-|.|++.|||||..+.+= +..|.=--+-.+|..+..-.++. ..-.+.++|.||= .+.... .+ ..+ ..
T Consensus 2 iLLMG~~~sGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~l~l~iwD~pGq~~f~e~~~~-----~~-~e~if~ 75 (230)
T pfam04670 2 VLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDDFMENYLT-----RQ-KEHIFS 75 (230)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHCC-----CC-HHHHHH
T ss_conf 787568999877769998679982141202577776778774168736899976983535441200-----22-354764
Q ss_pred HHHHHHHHCCCCCCCHHHHHH---HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 357887520222211013466---67899877766750598899997465899889999999999
Q gi|254780648|r 236 RTHVLLHIVSALEENVQAAYQ---CILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELA 297 (335)
Q Consensus 236 r~~vLl~VVD~s~~d~~~~~~---~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~ 297 (335)
.+.+|+||+|+.+++..+++. .+...+.+|+++. ..-+.+.|+|++.++...+..+...
T Consensus 76 ~v~~lIyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~---~v~vfiHK~D~l~~d~r~~~~~~~~ 137 (230)
T pfam04670 76 NVGVLIYVFDVESREYEEDLATLVKIIEALYQYSPNA---KVFVLIHKMDLLSEDERKEIFEDRK 137 (230)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC---EEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 4788999996888609999999999999999839998---8999996035888667899999999
No 277
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.69 E-value=1.3e-08 Score=71.95 Aligned_cols=155 Identities=12% Similarity=0.100 Sum_probs=93.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE--EEE-----CC--EEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 124421677753035410145401212110000001026--632-----98--689982264212473116775123443
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI--VKE-----GY--KEFILADIPGIIKNAHQGAGIGDRFLK 232 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv--v~~-----~~--~~~~i~D~PGlIegA~~~~glG~~FLr 232 (335)
|-+||-+.||||||++.++.... +.+|+ .|.-..+.+ +.+ +. ..+.|+||+|--+ ++-++
T Consensus 3 IlllGDsgVGKTSL~~~~~~~~f-~~~~~-~TiG~~v~~k~~~~~~~~~~~k~~~l~lWDtaGqer---------y~sl~ 71 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICKNQV-LGRPS-WTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES---------VKSTR 71 (202)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCCC-CCEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCHH---------HHHHH
T ss_conf 99999999899999999983988-88888-850367899999933787678389999998998775---------77678
Q ss_pred --HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH--------------HHHH---CCCCEEEEEECCCCCCHHHHH---
Q ss_conf --333357887520222211013466678998777--------------6675---059889999746589988999---
Q gi|254780648|r 233 --HTERTHVLLHIVSALEENVQAAYQCILDELSAY--------------NSEL---RKKIEIVGLSQIDTVDSDTLA--- 290 (335)
Q Consensus 233 --hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y--------------~~~L---~~Kp~IIVlNKiDl~~~e~~~--- 290 (335)
....++.++.|.|+++....+.++.+..|+... +... ..-|.++|-||.|++++....
T Consensus 72 ~~yYr~a~gvILVyDvTnr~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~~r~~~~~~ 151 (202)
T cd04102 72 AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNL 151 (202)
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCCCCCCH
T ss_conf 99758898999999894989998699999999753676665455666555333467897589997606524343555423
Q ss_pred --HH---------HHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf --99---------99999862-994899988878899999999999998
Q gi|254780648|r 291 --RK---------KNELATQC-GQVPFEFSSITGHGIPQILECLHDKIF 327 (335)
Q Consensus 291 --~~---------~~~l~~~~-~~~vi~ISA~tg~GI~eL~~~I~e~L~ 327 (335)
.. .+++.... ....+.-||.+..++....+...+..+
T Consensus 152 ~~~~~~~ia~q~~~eei~~~c~~~~~~~~~~~~~~kl~~ff~~vie~~y 200 (202)
T cd04102 152 VLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEKRY 200 (202)
T ss_pred HHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 5553025777516678887456844003467551689999999988882
No 278
>KOG0077 consensus
Probab=98.69 E-value=9.5e-09 Score=72.84 Aligned_cols=154 Identities=19% Similarity=0.164 Sum_probs=98.2
Q ss_pred EECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 30112442167775303541014540121211000000102663298689982264212473116775123443333357
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
.+-+-+.|+-||||+||++.|-+.+-- -+ --|++|.---+...+-.|+..|+-|=.. |- +++ -..+..++
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~--qh-vPTlHPTSE~l~Ig~m~ftt~DLGGH~q-Ar--r~w----kdyf~~v~ 89 (193)
T KOG0077 20 FGKLLFLGLDNAGKTTLLHMLKDDRLG--QH-VPTLHPTSEELSIGGMTFTTFDLGGHLQ-AR--RVW----KDYFPQVD 89 (193)
T ss_pred CCEEEEEEECCCCHHHHHHHHCCCCCC--CC-CCCCCCCHHHHEECCCEEEEECCCCHHH-HH--HHH----HHHHHHHC
T ss_conf 751899951577526689887330011--35-7876897677313571589972566799-99--888----87876543
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHH--HHHHHC--------------
Q ss_conf 887520222211013466678998777--66750598899997465899889999999--999862--------------
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAY--NSELRKKIEIVGLSQIDTVDSDTLARKKN--ELATQC-------------- 300 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y--~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~--~l~~~~-------------- 300 (335)
.++|+||+.+.+.. ..-+.||+.. +..+..-|.+|..||+|.+.+-...+... .+....
T Consensus 90 ~iv~lvda~d~er~---~es~~el~~ll~~e~la~vp~lilgnKId~~~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~r 166 (193)
T KOG0077 90 AIVYLVDAYDQERF---AESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVR 166 (193)
T ss_pred EEEEEEEHHHHHHH---HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 16853011217776---778999998876887715861011165568873337999899998887424652124688877
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9948999888788999999999999
Q gi|254780648|r 301 GQVPFEFSSITGHGIPQILECLHDK 325 (335)
Q Consensus 301 ~~~vi~ISA~tg~GI~eL~~~I~e~ 325 (335)
+.++|.+|...+.|--+-..++.++
T Consensus 167 p~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077 167 PLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEEEEEECCCCCCEEEEEHHHH
T ss_conf 5689989986367663100100020
No 279
>KOG2486 consensus
Probab=98.66 E-value=1.1e-08 Score=72.53 Aligned_cols=153 Identities=22% Similarity=0.156 Sum_probs=84.9
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHH----HHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCC----C---HH
Q ss_conf 01124421677753035410145401212----1100000010266329868998226421247311677----5---12
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIAD----YPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAG----I---GD 228 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~----ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~g----l---G~ 228 (335)
+.++++|..|+|||||||.+.+.+ .+++ -|.-|..-+. ..-+.+++++|+||+ .-|.-+-. | -.
T Consensus 137 pe~~~~g~SNVGKSSLln~~~r~k-~~~~t~k~K~g~Tq~in~---f~v~~~~~~vDlPG~-~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486 137 PELAFYGRSNVGKSSLLNDLVRVK-NIADTSKSKNGKTQAINH---FHVGKSWYEVDLPGY-GRAGYGFELPADWDKFTK 211 (320)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-HHHHHCCCCCCCCEEEEE---EECCCEEEEEECCCC-CCCCCCCCCCCHHHHHHH
T ss_conf 526662477622788876543214-556403788765113200---120554899846886-545678557414767578
Q ss_pred HHHHHHHHHHHHH-H-HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH------HHHHHHHHHHC
Q ss_conf 3443333357887-5-20222211013466678998777667505988999974658998899------99999999862
Q gi|254780648|r 229 RFLKHTERTHVLL-H-IVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL------ARKKNELATQC 300 (335)
Q Consensus 229 ~FLrhIer~~vLl-~-VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~------~~~~~~l~~~~ 300 (335)
.+| +||..++. | ++|++.+-.-.|...|. =+.+ ..-|+.+|+||||....-.. ..+...+....
T Consensus 212 ~Y~--leR~nLv~~FLLvd~sv~i~~~D~~~i~-~~ge-----~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486 212 SYL--LERENLVRVFLLVDASVPIQPTDNPEIA-WLGE-----NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHH--HHHHHHHEEEEEEECCCCCCCCCHHHHH-HHHH-----CCCCEEEEEEHHHHHHHCCCCCCCCCCCCEEEHHHCC
T ss_conf 888--7265331156663036788998769998-8752-----4997388630244555302235575400121020015
Q ss_pred ------CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf ------9948999888788999999999999
Q gi|254780648|r 301 ------GQVPFEFSSITGHGIPQILECLHDK 325 (335)
Q Consensus 301 ------~~~vi~ISA~tg~GI~eL~~~I~e~ 325 (335)
..+.+.+|+.+..|+++|+-.|.+.
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred CCCEECCCCCEEEECCCCCCCEEEEEEHHHH
T ss_conf 0004115870132043425720011016644
No 280
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.65 E-value=3.8e-08 Score=69.21 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=43.0
Q ss_pred HHHCCCCEEEEEECCCCCCHH--HHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 675059889999746589988--99999999998629-948999888788999999999999
Q gi|254780648|r 267 SELRKKIEIVGLSQIDTVDSD--TLARKKNELATQCG-QVPFEFSSITGHGIPQILECLHDK 325 (335)
Q Consensus 267 ~~L~~Kp~IIVlNKiDl~~~e--~~~~~~~~l~~~~~-~~vi~ISA~tg~GI~eL~~~I~e~ 325 (335)
|.+...-.++++||+||++.- .+....+.+.+..+ .++|++||.+|+|+++..+||.++
T Consensus 226 P~mF~~ad~vlinKiDLlp~~dFD~~~~~~~~~~vNp~~~v~~vSa~tGeGld~W~~WL~~~ 287 (290)
T PRK10463 226 PHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred HHHHHHCCEEEEEHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 66764257899865651220288999999999986989858997568887899999999997
No 281
>PRK12739 elongation factor G; Reviewed
Probab=98.63 E-value=1.7e-07 Score=65.28 Aligned_cols=110 Identities=20% Similarity=0.236 Sum_probs=70.4
Q ss_pred EECEEEEECCCCCCCEEEEEEC---CCCCHHH---------HH------HHCCCEECCEEEEECCEEEEEECCCCCCCCC
Q ss_conf 3011244216777530354101---4540121---------21------1000000102663298689982264212473
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVT---RAKPKIA---------DY------PFTTLYPNLGIVKEGYKEFILADIPGIIKNA 220 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls---~ak~kIa---------~y------pFTT~~P~lGvv~~~~~~~~i~D~PGlIegA 220 (335)
|=.||+||---+|||||.-+|- +.-.+++ || -..|+.-..-.+.+.+..|.++|+||-+
T Consensus 10 IRNi~IvaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~s~~~~~~~iNLIDTPGHv--- 86 (693)
T PRK12739 10 TRNIGIMAHIDAGKTTTTERILFYTGKIHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWKDHRINIIDTPGHV--- 86 (693)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCEEEEEEECCCCC---
T ss_conf 13999990799898999999999769856573343897568780999875986745527784599899999496974---
Q ss_pred CCCCCCHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 1167751234433333----5788752022221101346667899877766750598899997465899
Q gi|254780648|r 221 HQGAGIGDRFLKHTER----THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVD 285 (335)
Q Consensus 221 ~~~~glG~~FLrhIer----~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~ 285 (335)
+|.-++++ ||..|.|||+.+- ...+-+.+.+++.+ ...|.++++||+|.+.
T Consensus 87 --------DF~~EV~~alrv~DgalvvVDaveG-V~~qT~~v~rqa~~-----~~lp~il~iNKiDR~~ 141 (693)
T PRK12739 87 --------DFTIEVERSLRVLDGAVAVFDAVSG-VEPQSETVWRQADK-----YGVPRIVFVNKMDRIG 141 (693)
T ss_pred --------HHHHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCCC
T ss_conf --------0589999999984879999978988-76779999999998-----6989699997978899
No 282
>KOG0458 consensus
Probab=98.63 E-value=1e-07 Score=66.55 Aligned_cols=147 Identities=23% Similarity=0.326 Sum_probs=82.2
Q ss_pred EEECEEEEECCCCCCCEEEEEE-------CCC-CC-------HHH--HHHHC-----C-CEECCE------E--EEECCE
Q ss_conf 6301124421677753035410-------145-40-------121--21100-----0-000102------6--632986
Q gi|254780648|r 158 LIADIGIIGLPNAGKSTFLASV-------TRA-KP-------KIA--DYPFT-----T-LYPNLG------I--VKEGYK 206 (335)
Q Consensus 158 ~iaDVglVG~PNaGKSTLln~l-------s~a-k~-------kIa--~ypFT-----T-~~P~lG------v--v~~~~~ 206 (335)
..-....+|--+||||||+..+ +.. .. +.+ ++.|. | -+.--| + ++...+
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCE
T ss_conf 61589997023454111023788873686578899999998752875302567743631245436367754689846861
Q ss_pred EEEEECCCCC---CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC------HHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8998226421---2473116775123443333357887520222211------013466678998777667505988999
Q gi|254780648|r 207 EFILADIPGI---IKNAHQGAGIGDRFLKHTERTHVLLHIVSALEEN------VQAAYQCILDELSAYNSELRKKIEIVG 277 (335)
Q Consensus 207 ~~~i~D~PGl---IegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d------~~~~~~~I~~EL~~y~~~L~~Kp~IIV 277 (335)
.+++.|.||. |.++.-| +--+|+-+.|||++... +..+.+-+..-|+. |.-...+|+
T Consensus 256 ~~tliDaPGhkdFi~nmi~g----------~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~----Lgi~qliva 321 (603)
T KOG0458 256 IVTLIDAPGHKDFIPNMISG----------ASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS----LGISQLIVA 321 (603)
T ss_pred EEEEECCCCCCCCCHHHHCC----------CCCCCEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHH----CCCCEEEEE
T ss_conf 69986078742355234336----------2215668999987754333134879865899999987----495258888
Q ss_pred EECCCCCC--HHHHHHHHHHHH----HHCCC-----CEEEEECCCCCCHHHH
Q ss_conf 97465899--889999999999----86299-----4899988878899999
Q gi|254780648|r 278 LSQIDTVD--SDTLARKKNELA----TQCGQ-----VPFEFSSITGHGIPQI 318 (335)
Q Consensus 278 lNKiDl~~--~e~~~~~~~~l~----~~~~~-----~vi~ISA~tg~GI~eL 318 (335)
+||+|+++ ++...++..++. +..++ ..+|||+++|+|+-.-
T Consensus 322 iNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458 322 INKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 6301012753889999999899999985285047765695546567762123
No 283
>KOG0088 consensus
Probab=98.63 E-value=8.2e-08 Score=67.18 Aligned_cols=155 Identities=16% Similarity=0.201 Sum_probs=100.3
Q ss_pred EEEEECCCCCCCEEEEEEC-----CCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHH--HHHH
Q ss_conf 1244216777530354101-----45401212110000001026632986899822642124731167751234--4333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVT-----RAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRF--LKHT 234 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls-----~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~F--LrhI 234 (335)
|-|+|---+|||||.=+.. ...-..-.-.|.++.-+++ .-..++-|+|++|- .+| |.-|
T Consensus 16 ~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e---d~ra~L~IWDTAGQ-----------ErfHALGPI 81 (218)
T KOG0088 16 IVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE---DCRADLHIWDTAGQ-----------ERFHALGPI 81 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC---CCEEEEEEEECCCH-----------HHHHCCCCE
T ss_conf 9997487556068999998723230467899988763304621---11311432124445-----------765235753
Q ss_pred H--HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH-HHHHHHHHHCCCCEEEEECCC
Q ss_conf 3--3578875202222110134666789987776675059889999746589988999-999999986299489998887
Q gi|254780648|r 235 E--RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLA-RKKNELATQCGQVPFEFSSIT 311 (335)
Q Consensus 235 e--r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~-~~~~~l~~~~~~~vi~ISA~t 311 (335)
. -++-.+.|.|++++|..+..+.+..||+..-- .+...+||-||+||-++.... .....+.+..+...+..||+.
T Consensus 82 YYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG--nei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~ 159 (218)
T KOG0088 82 YYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG--NEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKD 159 (218)
T ss_pred EEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC--CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHEECCCCC
T ss_conf 77079962899864446889999999999998718--8359999537446788642029889999986333431111102
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 889999999999999854523
Q gi|254780648|r 312 GHGIPQILECLHDKIFSIRGE 332 (335)
Q Consensus 312 g~GI~eL~~~I~e~L~~~r~e 332 (335)
..||.+|.+.+.+.+-+....
T Consensus 160 N~Gi~elFe~Lt~~MiE~~s~ 180 (218)
T KOG0088 160 NVGISELFESLTAKMIEHSSQ 180 (218)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
T ss_conf 437999999999999987422
No 284
>KOG2484 consensus
Probab=98.58 E-value=1.5e-08 Score=71.68 Aligned_cols=136 Identities=29% Similarity=0.360 Sum_probs=77.0
Q ss_pred CCCCEEEEC-----CCCCEEEE-------CCC-CEEEEEEECCC----C-------------EEEECCCCCCCCCC--CC
Q ss_conf 446119982-----83323573-------258-82664561268----4-------------55522677776344--33
Q gi|254780648|r 82 KGEDVVLTV-----PVGTQVFE-------EDG-ISLICDLDQEG----Q-------------RIILAPGGNGGFGN--AH 129 (335)
Q Consensus 82 ~g~d~~i~v-----P~GT~v~~-------~~~-~~~~~dl~~~~----~-------------~~~~~~GG~GG~GN--~~ 129 (335)
...|++|+| |.||.-.+ +.. .++|.=|.... + .-++.+-+.++... .+
T Consensus 145 e~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~~~~~~ 224 (435)
T KOG2484 145 EASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQNSNSKN 224 (435)
T ss_pred HHHHEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEEHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC
T ss_conf 65105788630558877777569999974568724999950210488889999999998558863166153000243111
Q ss_pred CCCCCCCC--CCCCCCCCCCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCC-HHHHHHHCCCEECCEEEEECCE
Q ss_conf 26766767--61013677530268999997630112442167775303541014540-1212110000001026632986
Q gi|254780648|r 130 FKSSTNQA--PYYANPGILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKP-KIADYPFTTLYPNLGIVKEGYK 206 (335)
Q Consensus 130 f~s~~n~~--P~~~~~G~~G~~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~-kIa~ypFTT~~P~lGvv~~~~~ 206 (335)
+.+|..-. -..--.|..+... +||..--||+||+||+||||++|+|.+++. -+++-|.-|+.-. .| .-+.
T Consensus 225 ~~~s~c~gae~l~~~lgny~~~~----~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smq--eV-~Ldk 297 (435)
T KOG2484 225 LQSSVCFGAETLMKVLGNYCRKG----ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQ--EV-KLDK 297 (435)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCC----CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH--HE-ECCC
T ss_conf 22101110999999854733366----66741686432488877169999987740466778755003545--30-0567
Q ss_pred EEEEECCCCCCCCCCCCC
Q ss_conf 899822642124731167
Q gi|254780648|r 207 EFILADIPGIIKNAHQGA 224 (335)
Q Consensus 207 ~~~i~D~PGlIegA~~~~ 224 (335)
.+.+.|-||+|-......
T Consensus 298 ~i~llDsPgiv~~~~~~~ 315 (435)
T KOG2484 298 KIRLLDSPGIVPPSIDEK 315 (435)
T ss_pred CCEECCCCCEEECCCCCC
T ss_conf 732304786320677863
No 285
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=98.57 E-value=2.4e-07 Score=64.37 Aligned_cols=86 Identities=14% Similarity=0.218 Sum_probs=57.4
Q ss_pred HHHHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH----HHHHHHHHHHHHCC---C
Q ss_conf 433333-578875202222110134666789987776675059889999746589988----99999999998629---9
Q gi|254780648|r 231 LKHTER-THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD----TLARKKNELATQCG---Q 302 (335)
Q Consensus 231 LrhIer-~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e----~~~~~~~~l~~~~~---~ 302 (335)
|.+|.. ..+++||||+.+-+. .+..+|..+ +.++|.++|.||+|+++.. .+.+...+..+..+ .
T Consensus 65 l~~i~~~~~lvv~VvDi~Df~g-----S~~~~l~~~---ig~~~vilV~NKvDLLP~~~~~~~~~~wv~~~~~~~gl~~~ 136 (367)
T PRK13796 65 LNGIGDSDALVVNVVDIFDFNG-----SWIPGLHRF---VGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPV 136 (367)
T ss_pred HHHHCCCCCEEEEEEECCCCCC-----CHHHHHHHH---HCCCCEEEEEECHHCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 9862536708999997445776-----513508987---18984899998233388767878999999999997599855
Q ss_pred CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 4899988878899999999999
Q gi|254780648|r 303 VPFEFSSITGHGIPQILECLHD 324 (335)
Q Consensus 303 ~vi~ISA~tg~GI~eL~~~I~e 324 (335)
.|+.|||+++.|+++|++.|.+
T Consensus 137 dV~lvSak~g~gv~~L~~~i~~ 158 (367)
T PRK13796 137 DVVLISAQKGQGIDELLDAIEK 158 (367)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 2899946578899999999998
No 286
>KOG0079 consensus
Probab=98.56 E-value=8.5e-08 Score=67.09 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=104.9
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCC--EECCEEEEE--CCEEEEEECCCCCCCCCCCCCCCHHHH---HH
Q ss_conf 01124421677753035410145401212110000--001026632--986899822642124731167751234---43
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTL--YPNLGIVKE--GYKEFILADIPGIIKNAHQGAGIGDRF---LK 232 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~--~P~lGvv~~--~~~~~~i~D~PGlIegA~~~~glG~~F---Lr 232 (335)
+-.-++|-|-+|||+|+-..+.- .=-.+|- ||+ +-.+-++.. +...+.|+|++|- .+| +-
T Consensus 9 fkllIigDsgVGKssLl~rF~dd-tFs~sYi-tTiGvDfkirTv~i~G~~VkLqIwDtAGq-----------ErFrtits 75 (198)
T KOG0079 9 FKLLIIGDSGVGKSSLLLRFADD-TFSGSYI-TTIGVDFKIRTVDINGDRVKLQIWDTAGQ-----------ERFRTITS 75 (198)
T ss_pred HHHHEECCCCCCHHHHHHHHHHC-CCCCCEE-EEEEEEEEEEEEECCCCEEEEEEEECCCH-----------HHHHHHHH
T ss_conf 88883268764578999998525-5565148-87533579998604886899998614057-----------99999988
Q ss_pred -HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECC
Q ss_conf -333357887520222211013466678998777667505988999974658998899-999999998629948999888
Q gi|254780648|r 233 -HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSI 310 (335)
Q Consensus 233 -hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~ 310 (335)
.-+-+..++.|.|+++.........+.+|++.--+ .-|.++|-||.|.++..-. .+..+.+....+...|..||+
T Consensus 76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd---sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaK 152 (198)
T KOG0079 76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD---SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAK 152 (198)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCC---CCCCEECCCCCCCCCCEEEEHHHHHHHHHHCCCHHEEHHHH
T ss_conf 770388669999977663656759999999985496---43522104678875433430388999998669201000023
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 78899999999999998545
Q gi|254780648|r 311 TGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 311 tg~GI~eL~~~I~e~L~~~r 330 (335)
..+|+++....|.+.+..++
T Consensus 153 e~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079 153 ENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred HCCCCHHHHHHHHHHHHHHH
T ss_conf 30241678999999999999
No 287
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=98.56 E-value=6.3e-07 Score=61.80 Aligned_cols=158 Identities=15% Similarity=0.194 Sum_probs=88.2
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCH------HHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 01124421677753035410145401------212110000001026632986899822642124731167751234433
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPK------IADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~k------Ia~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
-+||+.|-+-+|||||+|++-+-.+. ++--. ||..|..- -+...-.++++|+||+-..+.. -..+|+.
T Consensus 36 lnIavtGesG~GkSsfINalRg~g~e~~~aA~tGvve-tT~~~~~Y-~hp~~pnV~lwDLPG~gt~~f~----~~~Yl~~ 109 (375)
T pfam05049 36 LKIAVTGDSGNGKSSFINALRGIGHEEDGSAPTGVVE-TTMKRTPY-SHPHFPNVVLWDLPGLGATNFT----VETYLEE 109 (375)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE-ECCCCCCC-CCCCCCCEEEECCCCCCCCCCC----HHHHHHH
T ss_conf 4799854899867899998747898777768768766-32675567-8999998079628999989989----8999987
Q ss_pred H--HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC------------CHHHHH-HHH----H
Q ss_conf 3--33578875202222110134666789987776675059889999746589------------988999-999----9
Q gi|254780648|r 234 T--ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTV------------DSDTLA-RKK----N 294 (335)
Q Consensus 234 I--er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~------------~~e~~~-~~~----~ 294 (335)
+ +++|..+. =++++ .-...-.+-.++.. ..|....|-+|+|.- ++++.. ++. +
T Consensus 110 ~~f~~yDfFii--iss~r-f~~n~v~LAk~i~~-----mgK~fyfVrtKvD~Dl~~e~~~kp~~F~~e~~Lq~IR~~c~~ 181 (375)
T pfam05049 110 MKFSEYDFFII--ISSER-FSLNDVKLAKAIQR-----MGKRFYFVRTKLDSDLSNEQKGKPQTFPKEKVLQNIQDNCRN 181 (375)
T ss_pred CCCCCCCEEEE--EECCC-CCHHHHHHHHHHHH-----HCCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 48564778999--96775-43201899999998-----389479998623676065762589999989999999999999
Q ss_pred HHHHHC--CCCEEEEECC--CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999862--9948999888--788999999999999985452
Q gi|254780648|r 295 ELATQC--GQVPFEFSSI--TGHGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 295 ~l~~~~--~~~vi~ISA~--tg~GI~eL~~~I~e~L~~~r~ 331 (335)
.+++.. ..+||-||.. .......|.+.+.+.|...+.
T Consensus 182 ~L~k~gv~eP~VFLvSnfdl~~yDFp~L~~TL~~eLP~hKR 222 (375)
T pfam05049 182 NLQKEGVKEPPIFLVSNLDPSHYDFPKLRDTLLKDLPIIKR 222 (375)
T ss_pred HHHHCCCCCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99875888997899817881326818999999987368678
No 288
>KOG2423 consensus
Probab=98.52 E-value=2.4e-08 Score=70.45 Aligned_cols=66 Identities=30% Similarity=0.444 Sum_probs=46.8
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCC-HHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCC
Q ss_conf 999997630112442167775303541014540-1212110000001026632986899822642124731
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKP-KIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAH 221 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~-kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~ 221 (335)
|...-+-|+ ||+|||||+||||++|.|-+.++ +||+.|.-|..=+.= .-.++|-++|-||++.-.+
T Consensus 301 Lh~dkkqIS-VGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYI---tLmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423 301 LHSDKKQIS-VGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYI---TLMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred HCCCCCCEE-EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH---HHHHCEEEECCCCCCCCCC
T ss_conf 446765225-666248887558888887534531125888840388999---8872136744797248888
No 289
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.51 E-value=1.2e-06 Score=60.01 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=97.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCC---HHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 12442167775303541014540---121211000000102663298689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKP---KIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~---kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
|.|+|..-+|||+.-|.|-+.+. +.... -.|..-.......++++++++||||+..-.. -..+.-+.|.||-
T Consensus 3 IvLlGktGsGKSstgNtILG~~~F~s~~~~~-svT~~c~~~~~~~~gr~v~VIDTPg~~dt~~----~~~~~~~ei~~~~ 77 (196)
T cd01852 3 LVLVGKTGAGKSATGNTILGREVFESKLSAS-SVTKTCQKESAVWDGRRVNVIDTPGLFDTSV----SPEQLSKEIVRCL 77 (196)
T ss_pred EEEECCCCCCCHHHHEEECCCCCCCCCCCCC-CCCEEEEEEEEEECCCEEEEEECCCCCCCCC----CHHHHHHHHHHHH
T ss_conf 9997899986153403256876667889999-8755888888998893799996776356558----9799999999999
Q ss_pred --------HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH-------HHHHHHHHCCCC
Q ss_conf --------88752022221101346667899877766750598899997465899889999-------999999862994
Q gi|254780648|r 239 --------VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLAR-------KKNELATQCGQV 303 (335)
Q Consensus 239 --------vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~-------~~~~l~~~~~~~ 303 (335)
++|.|+... +-..++-+++..-++.|.++.. +-.||+++-.|.+....+++ .++.+.+..+..
T Consensus 78 ~l~~pGpHa~LLVi~~~-rfT~ee~~~v~~i~~~FGe~~~-~~tivLFT~~D~L~~~sie~~i~~~~~~L~~li~kCg~R 155 (196)
T cd01852 78 SLSAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVL-DHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR 155 (196)
T ss_pred HHCCCCCEEEEEEEECC-CCCHHHHHHHHHHHHHHCHHHH-HHEEEEEECCCCCCCCCHHHHHHHCCHHHHHHHHHHCCE
T ss_conf 84389973999999789-8898999999999999777868-528999965401168869999873469999999985998
Q ss_pred EEEEEC-----CCCCCHHHHHHHHHHHHHHH
Q ss_conf 899988-----87889999999999999854
Q gi|254780648|r 304 PFEFSS-----ITGHGIPQILECLHDKIFSI 329 (335)
Q Consensus 304 vi~ISA-----~tg~GI~eL~~~I~e~L~~~ 329 (335)
+..+.- .....+.+|++.|.+++.+.
T Consensus 156 y~~fnN~~~~~~~~~QV~eLl~kIe~mv~~N 186 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9998678997513899999999999999974
No 290
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.51 E-value=5e-07 Score=62.42 Aligned_cols=87 Identities=15% Similarity=0.260 Sum_probs=57.1
Q ss_pred HHHH-HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH----HHHHHHHHHHHHCC---C
Q ss_conf 4333-33578875202222110134666789987776675059889999746589988----99999999998629---9
Q gi|254780648|r 231 LKHT-ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD----TLARKKNELATQCG---Q 302 (335)
Q Consensus 231 LrhI-er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e----~~~~~~~~l~~~~~---~ 302 (335)
|.++ .+..+++||||+.+-+ -.+..+|..+ +..+|.++|.||+|++++. .+.+..++..+..+ .
T Consensus 57 l~~i~~~~~lVv~VvDi~Df~-----gS~~~~l~~~---~~~~~v~lV~NK~DLLP~~~~~~~i~~wv~~~~~~~gl~~~ 128 (360)
T TIGR03597 57 LNSLGDSNALIVYVVDIFDFE-----GSLIPELKRF---VGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPV 128 (360)
T ss_pred HHHHCCCCCEEEEEEECCCCC-----CCHHHHHHHH---HCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 987423683799998641477-----6534649998---38985899998054288767879999999999998599836
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 48999888788999999999999
Q gi|254780648|r 303 VPFEFSSITGHGIPQILECLHDK 325 (335)
Q Consensus 303 ~vi~ISA~tg~GI~eL~~~I~e~ 325 (335)
.|+.+||+++.|+++|++.|.+.
T Consensus 129 ~V~lvSa~~g~gi~~l~~~i~~~ 151 (360)
T TIGR03597 129 DIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 68999688898999999999987
No 291
>KOG0083 consensus
Probab=98.50 E-value=3.6e-07 Score=63.32 Aligned_cols=149 Identities=17% Similarity=0.275 Sum_probs=103.2
Q ss_pred EEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE------EEECC--EEEEEECCCCCCCCCCCCCCCHHHH--HHH
Q ss_conf 4421677753035410145401212110000001026------63298--6899822642124731167751234--433
Q gi|254780648|r 164 IIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI------VKEGY--KEFILADIPGIIKNAHQGAGIGDRF--LKH 233 (335)
Q Consensus 164 lVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv------v~~~~--~~~~i~D~PGlIegA~~~~glG~~F--Lrh 233 (335)
|+|-.-+||+.||-+.-.. .+---|....+|+ +..++ .++.++|+.|- .+| .-|
T Consensus 2 llgds~~gktcllir~kdg-----afl~~~fistvgid~rnkli~~~~~kvklqiwdtagq-----------erfrsvt~ 65 (192)
T KOG0083 2 LLGDSCTGKTCLLIRFKDG-----AFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ-----------ERFRSVTH 65 (192)
T ss_pred CCCCCCCCCEEEEEEECCC-----CEECCCEEEEEEECCCCCEECCCCCEEEEEEEECCCH-----------HHHHHHHH
T ss_conf 3456766856899995167-----4003761133200121304513883899998523145-----------77755447
Q ss_pred H--HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECC
Q ss_conf 3--3357887520222211013466678998777667505988999974658998899-999999998629948999888
Q gi|254780648|r 234 T--ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSI 310 (335)
Q Consensus 234 I--er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~ 310 (335)
- ..++.|+.|.|+++.-..++.+.+..|++.|..+ .-...++-||+|+..+... .+.-+.+.+..+.|.+..||+
T Consensus 66 ayyrda~allllydiankasfdn~~~wlsei~ey~k~--~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsak 143 (192)
T KOG0083 66 AYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKE--AVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAK 143 (192)
T ss_pred HHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHCCCCEECCCC
T ss_conf 6631656255433211301077899999999999886--67675442535541230456531788999879971640330
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 78899999999999998545
Q gi|254780648|r 311 TGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 311 tg~GI~eL~~~I~e~L~~~r 330 (335)
+|.|++.-.-.|.+.+.+.+
T Consensus 144 tg~nvd~af~~ia~~l~k~~ 163 (192)
T KOG0083 144 TGFNVDLAFLAIAEELKKLK 163 (192)
T ss_pred CCCCHHHHHHHHHHHHHHHC
T ss_conf 26437689999999999731
No 292
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.48 E-value=5.1e-07 Score=62.39 Aligned_cols=98 Identities=19% Similarity=0.340 Sum_probs=61.4
Q ss_pred ECCEEEEEECCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCEEEE
Q ss_conf 29868998226421247311677512344333----3357887520222211013466678998777667505-988999
Q gi|254780648|r 203 EGYKEFILADIPGIIKNAHQGAGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRK-KIEIVG 277 (335)
Q Consensus 203 ~~~~~~~i~D~PGlIegA~~~~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~-Kp~IIV 277 (335)
.+.++|++||+||- .+|.|.. .-|++-+.+||+-.. ..++ .+. ++|-..|+. |..+++
T Consensus 83 T~KRkFIiADTPGH-----------eQYTRNMaTGASTadlAIlLVDAR~G-vl~Q---TrR--Hs~I~sLLGIrhvvvA 145 (431)
T COG2895 83 TEKRKFIIADTPGH-----------EQYTRNMATGASTADLAILLVDARKG-VLEQ---TRR--HSFIASLLGIRHVVVA 145 (431)
T ss_pred CCCCEEEEECCCCH-----------HHHHHHHHCCCCCCCEEEEEEECCHH-HHHH---HHH--HHHHHHHHCCCEEEEE
T ss_conf 66630898459967-----------98764222362300379999964221-6777---677--8999997287679999
Q ss_pred EECCCCCC--HHHHHHH---HHHHHHHCCC---CEEEEECCCCCCHHH
Q ss_conf 97465899--8899999---9999986299---489998887889999
Q gi|254780648|r 278 LSQIDTVD--SDTLARK---KNELATQCGQ---VPFEFSSITGHGIPQ 317 (335)
Q Consensus 278 lNKiDl~~--~e~~~~~---~~~l~~~~~~---~vi~ISA~tg~GI~e 317 (335)
+|||||++ ++...++ +..|.++++. .++||||+.|+|+-.
T Consensus 146 VNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 146 VNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCCC
T ss_conf 741012356789999999999999997699852477432304875334
No 293
>KOG1144 consensus
Probab=98.47 E-value=4.8e-07 Score=62.54 Aligned_cols=152 Identities=24% Similarity=0.305 Sum_probs=88.2
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCC------CEECCE------EEEEC------CEEEEEECCCCCCCCCCCC
Q ss_conf 12442167775303541014540121211000------000102------66329------8689982264212473116
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTT------LYPNLG------IVKEG------YKEFILADIPGIIKNAHQG 223 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT------~~P~lG------vv~~~------~~~~~i~D~PGlIegA~~~ 223 (335)
+.++|--..||+-||..+....+.-+.|-..| -.|.-. ++..+ --.+.++|+|| |+
T Consensus 478 cCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg-----hE- 551 (1064)
T KOG1144 478 CCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG-----HE- 551 (1064)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-----CH-
T ss_conf 789711126605788876205532244566000005411526778999999875023313787048965887-----25-
Q ss_pred CCCHHHH--HH--HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH----------H-
Q ss_conf 7751234--43--3333578875202222110134666789987776675059889999746589988----------9-
Q gi|254780648|r 224 AGIGDRF--LK--HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD----------T- 288 (335)
Q Consensus 224 ~glG~~F--Lr--hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e----------~- 288 (335)
.| || --.-|++.+.|||+...---+.++.|.. |+ ..+-|+||+|||+|.+-.. .
T Consensus 552 -----sFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~l-LR-----~rktpFivALNKiDRLYgwk~~p~~~i~~~l 620 (1064)
T KOG1144 552 -----SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL-LR-----MRKTPFIVALNKIDRLYGWKSCPNAPIVEAL 620 (1064)
T ss_pred -----HHHHHHHCCCCCCCEEEEEEEHHCCCCCCHHHHHHH-HH-----HCCCCEEEEEHHHHHHCCCCCCCCCHHHHHH
T ss_conf -----555566504334553777853111677420678998-87-----5489759861013444044248983199999
Q ss_pred --------------HHHHHHHHHHHC-C-------------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf --------------999999999862-9-------------94899988878899999999999998545
Q gi|254780648|r 289 --------------LARKKNELATQC-G-------------QVPFEFSSITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 289 --------------~~~~~~~l~~~~-~-------------~~vi~ISA~tg~GI~eL~~~I~e~L~~~r 330 (335)
+..++.+|.++. + ..++|.||.+|+||..|+-+|.+.-+...
T Consensus 621 kkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144 621 KKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8744789999999999999999971104434231467465588621221367880789999999999999
No 294
>PRK00007 elongation factor G; Reviewed
Probab=98.46 E-value=1.3e-06 Score=59.83 Aligned_cols=110 Identities=22% Similarity=0.250 Sum_probs=65.4
Q ss_pred EECEEEEECCCCCCCEEEEEE---CCCCCHHH---------HHH------HCCCEECCEEEEE-CCEEEEEECCCCCCCC
Q ss_conf 301124421677753035410---14540121---------211------0000001026632-9868998226421247
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASV---TRAKPKIA---------DYP------FTTLYPNLGIVKE-GYKEFILADIPGIIKN 219 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~l---s~ak~kIa---------~yp------FTT~~P~lGvv~~-~~~~~~i~D~PGlIeg 219 (335)
|=.||+||---+|||||.-+| |++-.+++ ||- .-|+.-..-.+.. +...|.++||||-+
T Consensus 10 IRNi~IiaHvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~s~~~s~~~~~~~~iNlIDTPGHv-- 87 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDGHRINIIDTPGHV-- 87 (693)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCCEEEEEEECCCCC--
T ss_conf 709999916999989999999996698465842438985567828899769887322254882697389999197975--
Q ss_pred CCCCCCCHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 31167751234433333----5788752022221101346667899877766750598899997465899
Q gi|254780648|r 220 AHQGAGIGDRFLKHTER----THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVD 285 (335)
Q Consensus 220 A~~~~glG~~FLrhIer----~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~ 285 (335)
+|.-.++| ||..|.|||+.+- +..+-+.+.++..+ .+.|.++++||+|...
T Consensus 88 ---------DF~~Ev~~aLrv~DgAvlVvDav~G-V~~qT~~v~r~a~~-----~~lp~i~fINK~Dr~~ 142 (693)
T PRK00007 88 ---------DFTIEVERSLRVLDGAVAVFCAVGG-VEPQSETVWRQADK-----YKVPRIVFVNKMDRTG 142 (693)
T ss_pred ---------CHHHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCCC
T ss_conf ---------2489999999985868999988988-77779999999987-----5989699997977899
No 295
>KOG0081 consensus
Probab=98.46 E-value=3.8e-06 Score=57.09 Aligned_cols=150 Identities=23% Similarity=0.298 Sum_probs=93.0
Q ss_pred EECCCCCCCEEEEEECCCCCHHHHHHHCCCE-ECCEE-------E-EEC---------CEEEEEECCCCCCCCCCCCCCC
Q ss_conf 4216777530354101454012121100000-01026-------6-329---------8689982264212473116775
Q gi|254780648|r 165 IGLPNAGKSTFLASVTRAKPKIADYPFTTLY-PNLGI-------V-KEG---------YKEFILADIPGIIKNAHQGAGI 226 (335)
Q Consensus 165 VG~PNaGKSTLln~ls~ak~kIa~ypFTT~~-P~lGv-------v-~~~---------~~~~~i~D~PGlIegA~~~~gl 226 (335)
+|-.-|||+|+|-.-|..+ |+|.. ..+|+ | +.. ...+.++|++|-- .=+.|
T Consensus 15 LGDSGVGKTs~Ly~YTD~~-------F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE----RFRSL 83 (219)
T KOG0081 15 LGDSGVGKTSFLYQYTDGK-------FNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE----RFRSL 83 (219)
T ss_pred HCCCCCCCEEEEEEECCCC-------CCCEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCHH----HHHHH
T ss_conf 0467777347898732785-------334357774013440047883468998875228987520010478----88888
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE-EEEECCCCCCHHHHH-HHHHHHHHHCCCCE
Q ss_conf 1234433333578875202222110134666789987776675059889-999746589988999-99999998629948
Q gi|254780648|r 227 GDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEI-VGLSQIDTVDSDTLA-RKKNELATQCGQVP 304 (335)
Q Consensus 227 G~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~I-IVlNKiDl~~~e~~~-~~~~~l~~~~~~~v 304 (335)
-..|.| .+--.+.+.|.+++...-....+...|+.. ...+.|-| ++-||+||.+..... ....++..+.+.|+
T Consensus 84 TTAFfR---DAMGFlLiFDlT~eqSFLnvrnWlSQL~~h--AYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPY 158 (219)
T KOG0081 84 TTAFFR---DAMGFLLIFDLTSEQSFLNVRNWLSQLQTH--AYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPY 158 (219)
T ss_pred HHHHHH---HHCCCEEEEECCCHHHHHHHHHHHHHHHHH--HCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 999998---501115888625337788799899998774--013799989986712316665523999999999739982
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99988878899999999999998545
Q gi|254780648|r 305 FEFSSITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 305 i~ISA~tg~GI~eL~~~I~e~L~~~r 330 (335)
|..||-++.|+++-++.+.+.+++.-
T Consensus 159 fETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081 159 FETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 66024557689999999999999999
No 296
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.46 E-value=8.7e-08 Score=67.03 Aligned_cols=125 Identities=15% Similarity=0.220 Sum_probs=79.8
Q ss_pred EEECEEEEECCCCCCCEEEEEECCC-CCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 6301124421677753035410145-401212110000001026632986899822642124731167751234433333
Q gi|254780648|r 158 LIADIGIIGLPNAGKSTFLASVTRA-KPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTER 236 (335)
Q Consensus 158 ~iaDVglVG~PNaGKSTLln~ls~a-k~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer 236 (335)
.--.|-++|..-||||+.+|+|-+. ++.+..+-=+|..|..-.-..++..+.++|||||+++++++. .-.+-|.-|.|
T Consensus 30 ~sltILvlGKtGVGKSsTINSifgE~~~~~~aF~~~t~r~~~v~~tv~G~kl~iIDTPGL~~~~~~~~-~N~k~l~~iKr 108 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQR-VNRKILSSIKR 108 (249)
T ss_pred CEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCH-HHHHHHHHHHH
T ss_conf 43699998068764577677650854134477677886508998753344899860898776654221-30999999999
Q ss_pred ------HHHHHHH--CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf ------5788752--022221101346667899877766750598899997465899
Q gi|254780648|r 237 ------THVLLHI--VSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVD 285 (335)
Q Consensus 237 ------~~vLl~V--VD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~ 285 (335)
-+++||| +|.-..|. .|+..++.-=+.|.+.+=. ..|+|++-+-...
T Consensus 109 ~l~~~~~DvvLYvDRLD~~r~d~-~D~~ll~~iT~~fG~~IW~-naivvLTHa~~~p 163 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMYRRDY-LDLPLLRAITDSFGPSIWR-NAIVVLTHAASSP 163 (249)
T ss_pred HHCCCCCCEEEEEECCCCCCCCC-CHHHHHHHHHHHHHHHHHH-HHHEEEECCCCCC
T ss_conf 96289997899984576624586-4289999999876788875-4540353466489
No 297
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.44 E-value=2.4e-07 Score=64.35 Aligned_cols=89 Identities=12% Similarity=0.198 Sum_probs=57.0
Q ss_pred HHHHHH-HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH-----HC---
Q ss_conf 443333-357887520222211013466678998777667505988999974658998899999999998-----62---
Q gi|254780648|r 230 FLKHTE-RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELAT-----QC--- 300 (335)
Q Consensus 230 FLrhIe-r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~-----~~--- 300 (335)
.|.++. +..+++||||+.+-+. .+..+|..+ +..+|.++|+||+|++.++......+.+.+ ..
T Consensus 27 ~l~~~~~~~~lVv~VvDi~Df~~-----S~~~~l~~~---~~~~~v~lV~NK~DLLp~~~~~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 27 LLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF---GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHCCCCCCEEEEEEECCCCCC-----CCCHHHHHH---CCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99852467845999975435764-----446557986---1798689999815517887658888989999975015998
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99489998887889999999999999
Q gi|254780648|r 301 GQVPFEFSSITGHGIPQILECLHDKI 326 (335)
Q Consensus 301 ~~~vi~ISA~tg~GI~eL~~~I~e~L 326 (335)
...++.+||++++|+++|++.|.+..
T Consensus 99 ~~~v~lvSa~~~~gi~~L~~~i~~~~ 124 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 43179976657869899999999974
No 298
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.42 E-value=3.9e-06 Score=57.04 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=77.7
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHH---HHHCCC-----------EECCEEEEECCEEEEEECCCCCCCCCCCCCC
Q ss_conf 01124421677753035410145401212---110000-----------0010266329868998226421247311677
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIAD---YPFTTL-----------YPNLGIVKEGYKEFILADIPGIIKNAHQGAG 225 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~---ypFTT~-----------~P~lGvv~~~~~~~~i~D~PGlIegA~~~~g 225 (335)
--||-.|--|+|||||+-+|+-.++.=++ .-|-.+ .-.++++-+++.+.+ +|...-++.
T Consensus 118 v~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~-----rlknPld~a-- 190 (527)
T COG5258 118 VLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVV-----RLKNPLDEA-- 190 (527)
T ss_pred EEEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEE-----EECCCCCHH--
T ss_conf 8999742445786359878984577788840211345416777616532226999972499267-----605852077--
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHH------------------------HHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 51234433333578875202222110134------------------------666789987776675059889999746
Q gi|254780648|r 226 IGDRFLKHTERTHVLLHIVSALEENVQAA------------------------YQCILDELSAYNSELRKKIEIVGLSQI 281 (335)
Q Consensus 226 lG~~FLrhIer~~vLl~VVD~s~~d~~~~------------------------~~~I~~EL~~y~~~L~~Kp~IIVlNKi 281 (335)
+--+-+++++-++-+||.-...|+-. ..+-++.|.... -.+-|.++|++|+
T Consensus 191 ---E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~--a~~lPviVvvTK~ 265 (527)
T COG5258 191 ---EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIAL--AMELPVIVVVTKI 265 (527)
T ss_pred ---HHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH--HHCCCEEEEEEEC
T ss_conf ---77676652030899985378627899888887326666279999816773033067656564--6169779999952
Q ss_pred CCCCHHHHHHHHHHHHHHC-------------------------C---CCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5899889999999999862-------------------------9---9489998887889999999999999854
Q gi|254780648|r 282 DTVDSDTLARKKNELATQC-------------------------G---QVPFEFSSITGHGIPQILECLHDKIFSI 329 (335)
Q Consensus 282 Dl~~~e~~~~~~~~l~~~~-------------------------~---~~vi~ISA~tg~GI~eL~~~I~e~L~~~ 329 (335)
|+.+.+.+....+++...+ + .|+|.+||.+|+|++-|.+.+ ..|...
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f-~~Lp~r 340 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF-LLLPKR 340 (527)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHH-HHCCCC
T ss_conf 568278899999999999997434653550553267765433237825779998224575389999999-749850
No 299
>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO). More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=98.39 E-value=4.1e-07 Score=62.93 Aligned_cols=146 Identities=21% Similarity=0.291 Sum_probs=84.1
Q ss_pred EEEECEEEEECCCCCCCEEEEEECCCCCHH-----------------HHHHHC--------------CCEECCEEEEECC
Q ss_conf 763011244216777530354101454012-----------------121100--------------0000102663298
Q gi|254780648|r 157 KLIADIGIIGLPNAGKSTFLASVTRAKPKI-----------------ADYPFT--------------TLYPNLGIVKEGY 205 (335)
Q Consensus 157 k~iaDVglVG~PNaGKSTLln~ls~ak~kI-----------------a~ypFT--------------T~~P~lGvv~~~~ 205 (335)
|-.-.|++||-=-+||||++-.|--.--.| |.+.|. |++--+--++.+-
T Consensus 5 K~~~Nv~~IGHVD~GKST~~G~Lly~~G~I~~~~~eK~~kEa~e~GK~~F~fa~V~D~Lk~ERERGvTID~A~~KFeT~K 84 (445)
T TIGR00483 5 KEHINVAFIGHVDHGKSTLVGRLLYKAGAIDEQLLEKLKKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHKKFETDK 84 (445)
T ss_pred CCEEEEEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 43244899825408850266777754289658999999875755187303676543110000015622433445417885
Q ss_pred EEEEEECCCC-------CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 6899822642-------1247311677512344333335788752022221101----3466678998777667505988
Q gi|254780648|r 206 KEFILADIPG-------IIKNAHQGAGIGDRFLKHTERTHVLLHIVSALEENVQ----AAYQCILDELSAYNSELRKKIE 274 (335)
Q Consensus 206 ~~~~i~D~PG-------lIegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d~~----~~~~~I~~EL~~y~~~L~~Kp~ 274 (335)
++++++|-|| +|-|||+ +|.-+.|||..+.... -+=++ ++ =-.....|.=+..
T Consensus 85 Y~~TivDcPGHRDFiKNMITGaSQ--------------ADaAvLv~~v~~~~~~ag~~~~pQT-rE-H~~La~TLGi~Ql 148 (445)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQ--------------ADAAVLVVAVDDGEFEAGISVQPQT-RE-HVFLARTLGINQL 148 (445)
T ss_pred EEEEEEECCCCCHHHHHCCCCCCC--------------CCEEEEEEECCCCCCCCCEEECCCC-HH-HHHHHHHHCCEEE
T ss_conf 169998469870134311266751--------------2427999952544102401217860-57-7888775032045
Q ss_pred EEEEECCCCCC--HHHHHHHHHHHHH----HCCC-----CEEEEECCCCCCHHHH
Q ss_conf 99997465899--8899999999998----6299-----4899988878899999
Q gi|254780648|r 275 IVGLSQIDTVD--SDTLARKKNELAT----QCGQ-----VPFEFSSITGHGIPQI 318 (335)
Q Consensus 275 IIVlNKiDl~~--~e~~~~~~~~l~~----~~~~-----~vi~ISA~tg~GI~eL 318 (335)
++++||||.+. +++.++..+++.+ ..+. +.+|+||..|+|+-+-
T Consensus 149 iVAiNKMD~V~yd~~~f~~~~~~~s~~l~K~vGY~p~~v~FiP~s~~~GDN~~~~ 203 (445)
T TIGR00483 149 IVAINKMDSVNYDEEEFEALKKEVSEQLLKKVGYKPDEVPFIPISAFEGDNVIKK 203 (445)
T ss_pred EEEECCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHH
T ss_conf 3331024610027789999999999989987488756123254035467613433
No 300
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=1.7e-06 Score=59.21 Aligned_cols=128 Identities=23% Similarity=0.301 Sum_probs=79.0
Q ss_pred EEEEECEEEEECCCCCCCEEEEEE---CCCCCHHHHHH----HC-----------CCEECCEEEEEC-CEEEEEECCCCC
Q ss_conf 976301124421677753035410---14540121211----00-----------000010266329-868998226421
Q gi|254780648|r 156 LKLIADIGIIGLPNAGKSTFLASV---TRAKPKIADYP----FT-----------TLYPNLGIVKEG-YKEFILADIPGI 216 (335)
Q Consensus 156 lk~iaDVglVG~PNaGKSTLln~l---s~ak~kIa~yp----FT-----------T~~P~lGvv~~~-~~~~~i~D~PGl 216 (335)
+.-+-.||+++-=-+|||||.-+| |+.-.++++-- |+ |..-..-.+... +.+|.++||||-
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEEEEEECCCEEEEEECCCCC
T ss_conf 44540799996047880778899998759757785566786547887889866977864056899708658999579973
Q ss_pred CCCCCCCCCCHHHHHHHHHHH----HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
Q ss_conf 247311677512344333335----7887520222211013466678998777667505988999974658998899999
Q gi|254780648|r 217 IKNAHQGAGIGDRFLKHTERT----HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARK 292 (335)
Q Consensus 217 IegA~~~~glG~~FLrhIer~----~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~ 292 (335)
+ +|-.+++|+ |.-+.|+|+.+ ....+.+.+.+.+..| ..|+++++||+|.+-.+- ...
T Consensus 87 V-----------DFt~EV~rslrvlDgavvVvdave-GV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~a~~-~~~ 148 (697)
T COG0480 87 V-----------DFTIEVERSLRVLDGAVVVVDAVE-GVEPQTETVWRQADKY-----GVPRILFVNKMDRLGADF-YLV 148 (697)
T ss_pred C-----------CCHHHHHHHHHHHCCEEEEEECCC-CEEECHHHHHHHHHHC-----CCCEEEEEECCCCCCCCH-HHH
T ss_conf 5-----------347787998886165099998878-8300379999998655-----997599997843355673-350
Q ss_pred HHHHHHHCC
Q ss_conf 999998629
Q gi|254780648|r 293 KNELATQCG 301 (335)
Q Consensus 293 ~~~l~~~~~ 301 (335)
..++.+.+.
T Consensus 149 ~~~l~~~l~ 157 (697)
T COG0480 149 VEQLKERLG 157 (697)
T ss_pred HHHHHHHHC
T ss_conf 999999867
No 301
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.30 E-value=1.8e-06 Score=59.11 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 34433333578875202222110134666789987776675059889999746589988999999999986299489998
Q gi|254780648|r 229 RFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 229 ~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
+.-+-||++|++++|+|+-.+....+ ..+...|.++ ..+||.++|+||+||++++......+.+.+ .+..++..|
T Consensus 4 q~~~~ie~aDvVleV~DaR~p~~s~~-~~l~~~l~~~---~~~Kp~ilVlNK~DL~~~~~~~~w~~~~~~-~~~~~~~~s 78 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEV---DPRKKNILLLNKADLLTEEQRKAWAEYFKK-EGIVVVFFS 78 (141)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCCCC-HHHHHHHHHH---CCCCCEEEEEECCCCCCHHHHHHHHHHHHH-CCCCEEEEE
T ss_conf 99999976999999998988887689-9999999984---389957999865004999999999999984-499489984
Q ss_pred CCCCC
Q ss_conf 88788
Q gi|254780648|r 309 SITGH 313 (335)
Q Consensus 309 A~tg~ 313 (335)
|....
T Consensus 79 ~~~~~ 83 (141)
T cd01857 79 ALKEN 83 (141)
T ss_pred CCCCC
T ss_conf 26776
No 302
>KOG2485 consensus
Probab=98.30 E-value=3.9e-07 Score=63.06 Aligned_cols=155 Identities=16% Similarity=0.247 Sum_probs=77.8
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCEEEEC-----CCCCE--EEEC---CCCEEE----EEEECCCCEEEEC--CCCCCCCC
Q ss_conf 5420567866542213354446119982-----83323--5732---588266----4561268455522--67777634
Q gi|254780648|r 63 QHFKAQHGEKGMKRNRSGAKGEDVVLTV-----PVGTQ--VFEE---DGISLI----CDLDQEGQRIILA--PGGNGGFG 126 (335)
Q Consensus 63 ~~~~A~~G~~G~~~~~~G~~g~d~~i~v-----P~GT~--v~~~---~~~~~~----~dl~~~~~~~~~~--~GG~GG~G 126 (335)
..+...+=..+..+-++=-.--|++|+| |+-+. +++. ....+| .||..+.+.--+. .-++ ..
T Consensus 26 ~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~iq~~~~~--~~ 103 (335)
T KOG2485 26 RRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKIIQYLEWQ--NL 103 (335)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH--CC
T ss_conf 5657647899999998655655379996113467765548889733777549998401036833315999998762--03
Q ss_pred CCCCCCCCCCC------C-----CCCCCCCCCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEECCC------CCHHHHH
Q ss_conf 43326766767------6-----10136775302689999976301124421677753035410145------4012121
Q gi|254780648|r 127 NAHFKSSTNQA------P-----YYANPGILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVTRA------KPKIADY 189 (335)
Q Consensus 127 N~~f~s~~n~~------P-----~~~~~G~~G~~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~a------k~kIa~y 189 (335)
+..++.+-++. | .....+.+-.-++...|+. |=+||.||+|||||+|++-++ ..+++++
T Consensus 104 ~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~----vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~ 179 (335)
T KOG2485 104 ESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYN----VMVVGVPNVGKSSLINALRNVHLRKKKAARVGAE 179 (335)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEE----EEEECCCCCCHHHHHHHHHHHHHHHCCCEECCCC
T ss_conf 442564323655301010899999999777876314687026----9997389888088999999887653000010688
Q ss_pred HHCCCEECCEEEEE-CCEEEEEECCCCCCCCCCCCC
Q ss_conf 10000001026632-986899822642124731167
Q gi|254780648|r 190 PFTTLYPNLGIVKE-GYKEFILADIPGIIKNAHQGA 224 (335)
Q Consensus 190 pFTT~~P~lGvv~~-~~~~~~i~D~PGlIegA~~~~ 224 (335)
|.-|+. +-..++. ....+.++|+||++.....+.
T Consensus 180 pGVT~~-V~~~iri~~rp~vy~iDTPGil~P~I~~~ 214 (335)
T KOG2485 180 PGVTRR-VSERIRISHRPPVYLIDTPGILVPSIVDV 214 (335)
T ss_pred CCCEEE-EHHHEEECCCCCEEEECCCCCCCCCCCCH
T ss_conf 885223-12125743689658866887579887797
No 303
>KOG0466 consensus
Probab=98.27 E-value=1.1e-05 Score=54.24 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=44.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 598899997465899889999999999862------994899988878899999999999998
Q gi|254780648|r 271 KKIEIVGLSQIDTVDSDTLARKKNELATQC------GQVPFEFSSITGHGIPQILECLHDKIF 327 (335)
Q Consensus 271 ~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~------~~~vi~ISA~tg~GI~eL~~~I~e~L~ 327 (335)
-|..+|+-||+|++.++...+..+.+.+.. +.+++||||.-+.|++.+.+.|.+.+.
T Consensus 179 LkhiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466 179 LKHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCCHHHHHHHHHHCCC
T ss_conf 141899821233543778898899999997456557995210136433676799999986189
No 304
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.25 E-value=7.4e-06 Score=55.32 Aligned_cols=151 Identities=25% Similarity=0.283 Sum_probs=88.8
Q ss_pred EECEEEEECCCCCCCEEEEEEC------CCCCHHHHHH----------H-CCCEECCEEEEECCEEEEEECCCCCCCCCC
Q ss_conf 3011244216777530354101------4540121211----------0-000001026632986899822642124731
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVT------RAKPKIADYP----------F-TTLYPNLGIVKEGYKEFILADIPGIIKNAH 221 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls------~ak~kIa~yp----------F-TT~~P~lGvv~~~~~~~~i~D~PGlIegA~ 221 (335)
+-.||+|-----||+||..+|- +++-+++..- . |-|.-| --+++++..+-|+||||-
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKn-Tav~~~~~~INIvDTPGH----- 78 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKN-TAVNYNGTRINIVDTPGH----- 78 (603)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHCCCEEEECC-CEEECCCEEEEEECCCCC-----
T ss_conf 53068999844881028999987316544565201440376423443493898515-246208838987658986-----
Q ss_pred CCCCCHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCCCH--HHH-HHHH
Q ss_conf 167751234433333----5788752022221101346667-8998777667505988999974658998--899-9999
Q gi|254780648|r 222 QGAGIGDRFLKHTER----THVLLHIVSALEENVQAAYQCI-LDELSAYNSELRKKIEIVGLSQIDTVDS--DTL-ARKK 293 (335)
Q Consensus 222 ~~~glG~~FLrhIer----~~vLl~VVD~s~~d~~~~~~~I-~~EL~~y~~~L~~Kp~IIVlNKiDl~~~--e~~-~~~~ 293 (335)
- +|=..+|| .+-.+.|||+++- |+.+-+-+ .+-|+ +.-|| |+|+||+|.+++ ++. .+.+
T Consensus 79 A------DFGGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~-----~gL~P-IVVvNKiDrp~Arp~~Vvd~vf 145 (603)
T COG1217 79 A------DFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA-----LGLKP-IVVINKIDRPDARPDEVVDEVF 145 (603)
T ss_pred C------CCCCHHHHHHHHCCEEEEEEECCCC-CCCCHHHHHHHHHH-----CCCCC-EEEEECCCCCCCCHHHHHHHHH
T ss_conf 7------7662545114323348999975558-88731444899997-----49984-8999677899988789999999
Q ss_pred HHHH------HHCCCCEEEEECCCC----------CCHHHHHHHHHHHHHH
Q ss_conf 9999------862994899988878----------8999999999999985
Q gi|254780648|r 294 NELA------TQCGQVPFEFSSITG----------HGIPQILECLHDKIFS 328 (335)
Q Consensus 294 ~~l~------~~~~~~vi~ISA~tg----------~GI~eL~~~I~e~L~~ 328 (335)
.-|. ++++.++++-||..| +++..|.+.|.+.+..
T Consensus 146 DLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 146 DLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred HHHHHHCCCHHHCCCEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 999981997455787079854147510158655555316899999975899
No 305
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=98.23 E-value=7.8e-07 Score=61.26 Aligned_cols=149 Identities=21% Similarity=0.262 Sum_probs=81.2
Q ss_pred EEEEECCCCCCCEEEEEECC-------C-CCHHHHHH--HCCCEECCE--------EEEECC----EEEEEECCCCCCCC
Q ss_conf 12442167775303541014-------5-40121211--000000102--------663298----68998226421247
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTR-------A-KPKIADYP--FTTLYPNLG--------IVKEGY----KEFILADIPGIIKN 219 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~-------a-k~kIa~yp--FTT~~P~lG--------vv~~~~----~~~~i~D~PGlIeg 219 (335)
||+|-====||+||+-+|-+ + +-+++..- .==|+.--| -|++++ .+|-|+||||
T Consensus 4 IAIIAHVDHGKTTLVD~LL~Qsgf~f~~~~~~~~ER~MDSNDLErERGITILaKNTav~y~g~dG~~~INIvDTPG---- 79 (609)
T TIGR01394 4 IAIIAHVDHGKTTLVDALLKQSGFTFRADNEAVAERVMDSNDLERERGITILAKNTAVRYNGKDGVTKINIVDTPG---- 79 (609)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCCCEEEEEEECCCCCEEEEEEEECCC----
T ss_conf 8999880699436898888876588641588321354067652100155201300366252889718997781689----
Q ss_pred CCCCCCCHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCCCH--HHHHHH
Q ss_conf 31167751234433333----5788752022221101346667-8998777667505988999974658998--899999
Q gi|254780648|r 220 AHQGAGIGDRFLKHTER----THVLLHIVSALEENVQAAYQCI-LDELSAYNSELRKKIEIVGLSQIDTVDS--DTLARK 292 (335)
Q Consensus 220 A~~~~glG~~FLrhIer----~~vLl~VVD~s~~d~~~~~~~I-~~EL~~y~~~L~~Kp~IIVlNKiDl~~~--e~~~~~ 292 (335)
|= +|=-.+|| .|-.|.||||++- |+.|-+-+ .+=|+ +-- +-|||+||+|.+++ ++..+.
T Consensus 80 -HA------DFGGEVERvL~MVDGvlLlVDA~EG-PMPQTrFVL~KAL~-----~gL-kPIVViNKiDrp~ARP~eV~d~ 145 (609)
T TIGR01394 80 -HA------DFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE-----LGL-KPIVVINKIDRPSARPDEVVDE 145 (609)
T ss_pred -CC------CCCCEEEEECEEEEEEEEEEECCCC-CCCCCHHHHHHHHH-----CCC-CEEEEECCCCCCCCCHHHHHHH
T ss_conf -88------7886588733024058999857888-98853478999995-----689-3699971347887883788757
Q ss_pred HHHHHH-------HCCCCEEEEECC---------------CCCCHHHHHHHHHHHHHH
Q ss_conf 999998-------629948999888---------------788999999999999985
Q gi|254780648|r 293 KNELAT-------QCGQVPFEFSSI---------------TGHGIPQILECLHDKIFS 328 (335)
Q Consensus 293 ~~~l~~-------~~~~~vi~ISA~---------------tg~GI~eL~~~I~e~L~~ 328 (335)
.-+|.- +++-++++=||+ ..++++.|.+.|.+.+..
T Consensus 146 vFDLF~~LgA~deQLDFP~vYASa~~G~A~l~~~~dg~~~~~~~m~PLFd~I~~hvPa 203 (609)
T TIGR01394 146 VFDLFIELGADDEQLDFPIVYASARAGWASLDKDKDGLDDDSEDMAPLFDAILRHVPA 203 (609)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 8788885388800101256766523672014466577887220178999898640688
No 306
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=98.22 E-value=1.2e-05 Score=54.01 Aligned_cols=53 Identities=26% Similarity=0.270 Sum_probs=32.7
Q ss_pred EEEEECCCCCCCEEEEEECC-CCCHHHH---H----HHCCCEECCEEEEECCEEEEEECCCCCCC
Q ss_conf 12442167775303541014-5401212---1----10000001026632986899822642124
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTR-AKPKIAD---Y----PFTTLYPNLGIVKEGYKEFILADIPGIIK 218 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~-ak~kIa~---y----pFTT~~P~lGvv~~~~~~~~i~D~PGlIe 218 (335)
..|+|..-||||||+|+|.. ..-+++. . --||.+..+=.+ ++ . .++|+||+-+
T Consensus 167 sv~~G~SGVGKSSLiN~L~~~~~~~t~~is~~~~rGrHTTt~~~l~~l--~~-G-~iiDTPG~r~ 227 (298)
T PRK00098 167 TVLAGQSGVGKSTLLNALVPELELKTGEISEALGRGKHTTTHVELYDL--PG-G-LLIDTPGFSS 227 (298)
T ss_pred EEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEEEC--CC-C-EEEECCCCCC
T ss_conf 999878988788888760714445667556651897213304689986--99-7-5981898775
No 307
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.21 E-value=3.5e-06 Score=57.31 Aligned_cols=76 Identities=9% Similarity=0.067 Sum_probs=48.6
Q ss_pred HHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH--HHHHHHHHHHCC-CCEEEEECCCCC
Q ss_conf 887520222211--013466678998777667505988999974658998899--999999998629-948999888788
Q gi|254780648|r 239 VLLHIVSALEEN--VQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL--ARKKNELATQCG-QVPFEFSSITGH 313 (335)
Q Consensus 239 vLl~VVD~s~~d--~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~--~~~~~~l~~~~~-~~vi~ISA~tg~ 313 (335)
+-++|||+++-+ |..-+ |.+.. .-++|+||+|+++.-.. +...+...+-.+ .+++.+|+++|+
T Consensus 120 ~~v~VidvteGe~~P~K~g-----------P~i~~-aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~ 187 (202)
T COG0378 120 LRVVVIDVTEGEDIPRKGG-----------PGIFK-ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGE 187 (202)
T ss_pred EEEEEEECCCCCCCCCCCC-----------CCEEE-EEEEEEEHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 6999998788888765579-----------96467-41899856773877286699999999984999988998478786
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780648|r 314 GIPQILECLHDKI 326 (335)
Q Consensus 314 GI~eL~~~I~e~L 326 (335)
|++++++++....
T Consensus 188 G~~~~~~~i~~~~ 200 (202)
T COG0378 188 GLDEWLRFIEPQA 200 (202)
T ss_pred CHHHHHHHHHHHC
T ss_conf 8999999987640
No 308
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=98.17 E-value=1.6e-05 Score=53.33 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=31.5
Q ss_pred EEEECCCCCCCEEEEEEC-CCCCHHHHH-------HHCCCEECCEEEEECCEEEEEECCCCCC
Q ss_conf 244216777530354101-454012121-------1000000102663298689982264212
Q gi|254780648|r 163 GIIGLPNAGKSTFLASVT-RAKPKIADY-------PFTTLYPNLGIVKEGYKEFILADIPGII 217 (335)
Q Consensus 163 glVG~PNaGKSTLln~ls-~ak~kIa~y-------pFTT~~P~lGvv~~~~~~~~i~D~PGlI 217 (335)
.|+|..-||||||||+|. ...-+++.- --||++-.+ +..++.. .++||||+-
T Consensus 175 v~~G~SGVGKSSLIN~L~p~~~l~TgeVS~k~~rGrHTTr~~eL--~~L~~Gg-~iiDTPGf~ 234 (351)
T PRK12289 175 VVAGPSGVGKSSLINRLIPDVELRVGEVSGKLQRGRHTTRHVEL--FELPNGG-LLADTPGFN 234 (351)
T ss_pred EEECCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEE--EECCCCC-EEEECCCCC
T ss_conf 99817988788988763741234566540648998783551689--9948995-899797988
No 309
>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=98.16 E-value=1.1e-05 Score=54.25 Aligned_cols=145 Identities=21% Similarity=0.369 Sum_probs=93.0
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEE--E-CCE-EEEEECCCCCCCCCCCCCCCHHHH--H--
Q ss_conf 0112442167775303541014540121211000000102663--2-986-899822642124731167751234--4--
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVK--E-GYK-EFILADIPGIIKNAHQGAGIGDRF--L-- 231 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~--~-~~~-~~~i~D~PGlIegA~~~~glG~~F--L-- 231 (335)
.-|.+.|.-.-||++|+..+...+ ++.-.+--+..++|... . +.. .+++.|+||- + .| +
T Consensus 91 p~~~~~gh~dhg~~~ll~~~~~~~--~~~~~~gg~~~~~g~y~~~~~~~~~~~~f~d~pgh-----~------~f~~~~~ 157 (594)
T TIGR00487 91 PVVTIMGHVDHGKTSLLDSIRKTK--VAAGEAGGITQHIGAYHVEKEDGKKWITFLDTPGH-----E------AFTLMRA 157 (594)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCC--CCCCCCCCCHHHCCEEEEEECCCCEEEEEECCCCH-----H------HHHHHHH
T ss_conf 636885123554034565554100--00111365201013045664288437998407753-----6------7787763
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH--HHHHHHHHHHH---HHCC--CCE
Q ss_conf 3333357887520222211013466678998777667505988999974658998--89999999999---8629--948
Q gi|254780648|r 232 KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS--DTLARKKNELA---TQCG--QVP 304 (335)
Q Consensus 232 rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~--e~~~~~~~~l~---~~~~--~~v 304 (335)
|-.+-+++.+.|+.+.+.-..+..+.+.+ .+-..-|.++.+||+|.++. +.....+.++. +..+ ...
T Consensus 158 ~g~~~~d~~~~~~~~~dg~~~~~~~~~~h------~~~~~~p~~~~~n~~d~p~~~pd~~~~~~~~~g~~~~~wgg~~~~ 231 (594)
T TIGR00487 158 RGAKVTDIVVLVVAADDGVKPQTIEAISH------AKAANVPLIVAVNKIDKPEANPDRVKQELSEYGLVPEDWGGDTIF 231 (594)
T ss_pred CCCCEEEEEEEEEECCCCCCHHHHHHHHH------HHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHCCCCEEE
T ss_conf 37610015799984155642356887653------333077369986124676678778999987517750112783468
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998887889999999999
Q gi|254780648|r 305 FEFSSITGHGIPQILECLH 323 (335)
Q Consensus 305 i~ISA~tg~GI~eL~~~I~ 323 (335)
+++||+++.|+++|++.+.
T Consensus 232 ~~~~~~~g~g~~~l~~~~l 250 (594)
T TIGR00487 232 VPVSALTGDGIDELLDAIL 250 (594)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 8620013676578888888
No 310
>KOG1143 consensus
Probab=98.14 E-value=1.6e-05 Score=53.26 Aligned_cols=144 Identities=24% Similarity=0.329 Sum_probs=76.8
Q ss_pred EEEEECCCCCCCEEEEEECCC-------CCHHHHHH--------------HCCC-EECCE-EEEEC------------CE
Q ss_conf 124421677753035410145-------40121211--------------0000-00102-66329------------86
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRA-------KPKIADYP--------------FTTL-YPNLG-IVKEG------------YK 206 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~a-------k~kIa~yp--------------FTT~-~P~lG-vv~~~------------~~ 206 (335)
||.+|--.+|||||+-.||.. |.++.-+- |-++ .-+.| +|++. .+
T Consensus 170 vAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SSK 249 (591)
T KOG1143 170 VAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSSK 249 (591)
T ss_pred EEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEHHCCHHHHCCCCCCCCCHHCCCCCCCCCCCCHHHCCCHHHHHHHHCC
T ss_conf 99852765672236655410531478870663011063654057632001010053653430022320459998741023
Q ss_pred EEEEECCCCCCCCCCCCCCCHHHHHHHH------HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8998226421247311677512344333------3357887520222211013466678998777667505988999974
Q gi|254780648|r 207 EFILADIPGIIKNAHQGAGIGDRFLKHT------ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQ 280 (335)
Q Consensus 207 ~~~i~D~PGlIegA~~~~glG~~FLrhI------er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNK 280 (335)
-++++|++|- +++++.- .--+.-+.||.+.....+ +.++.|... .-++-|++++++|
T Consensus 250 lvTfiDLAGh-----------~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~----tTrEHLgl~--~AL~iPfFvlvtK 312 (591)
T KOG1143 250 LVTFIDLAGH-----------AKYQKTTIHGLTGYTPHFACLVVSADRGITW----TTREHLGLI--AALNIPFFVLVTK 312 (591)
T ss_pred EEEEEECCCC-----------HHHHEEEEEECCCCCCCEEEEEEECCCCCCC----CCHHHHHHH--HHHCCCEEEEEEE
T ss_conf 3887650442-----------2313045220036798627999986888765----408888899--9717876999984
Q ss_pred CCCCCHHHHHHHHHHHHHHC---C--------------------------CCEEEEECCCCCCHHHHHHHH
Q ss_conf 65899889999999999862---9--------------------------948999888788999999999
Q gi|254780648|r 281 IDTVDSDTLARKKNELATQC---G--------------------------QVPFEFSSITGHGIPQILECL 322 (335)
Q Consensus 281 iDl~~~e~~~~~~~~l~~~~---~--------------------------~~vi~ISA~tg~GI~eL~~~I 322 (335)
+|+.+...+....+++.... + .|+|.+|+++|+|++-|...+
T Consensus 313 ~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143 313 MDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHH
T ss_conf 01236321789999999887423763263485050788788887536881148998504763266999998
No 311
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.14 E-value=1.6e-06 Score=59.43 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=45.3
Q ss_pred EEEEECCCCCCCCCCCCCCCHHHH------HHHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 899822642124731167751234------43333357-88752022221101346667899877766750598899997
Q gi|254780648|r 207 EFILADIPGIIKNAHQGAGIGDRF------LKHTERTH-VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLS 279 (335)
Q Consensus 207 ~~~i~D~PGlIegA~~~~glG~~F------LrhIer~~-vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlN 279 (335)
.++++|+|||+..+..+..-.... .+++.+.+ +|+.|+++..+ +.. +.+.+--+.|++. ....+-|++
T Consensus 126 ~LTlvDLPGl~~~~~~~q~~~~~~~v~~lv~~Yi~~p~tIILaVv~a~~D-~an--q~~l~lAr~~Dp~--g~RTiGVlT 200 (240)
T smart00053 126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVD-LAN--SDALKLAKEVDPQ--GERTIGVIT 200 (240)
T ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC-HHH--HHHHHHHHHHCCC--CCEEEEEEC
T ss_conf 85441475412467899856799999999999847988069998407856-766--1999999971999--982899973
Q ss_pred CCCCCCHHH
Q ss_conf 465899889
Q gi|254780648|r 280 QIDTVDSDT 288 (335)
Q Consensus 280 KiDl~~~e~ 288 (335)
|.|++++..
T Consensus 201 KpDl~~~gs 209 (240)
T smart00053 201 KLDLMDEGT 209 (240)
T ss_pred CCCCCCCCC
T ss_conf 533457770
No 312
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=98.14 E-value=2e-05 Score=52.67 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=31.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHH--HHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 0598899997465899889999999--99986299489998887889999999999
Q gi|254780648|r 270 RKKIEIVGLSQIDTVDSDTLARKKN--ELATQCGQVPFEFSSITGHGIPQILECLH 323 (335)
Q Consensus 270 ~~Kp~IIVlNKiDl~~~e~~~~~~~--~l~~~~~~~vi~ISA~tg~GI~eL~~~I~ 323 (335)
..-+-+||+||+||++++....... ...+..+.+++.+||.+++|+++|.+.+.
T Consensus 151 ~~I~pvIvlNK~DL~~~~~~~~~~~~l~~Y~~lGY~v~~~Sa~~~~gl~~L~~~L~ 206 (344)
T PRK12288 151 LGIEPLIVLNKIDLLDDEERPFVNEQLDIYRNIGYRVLMVSSHTGEGLEPLEAALT 206 (344)
T ss_pred CCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHC
T ss_conf 69977999731440897789999999999986797399973688628999999876
No 313
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.12 E-value=1.2e-05 Score=54.02 Aligned_cols=128 Identities=19% Similarity=0.339 Sum_probs=78.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE---EEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102---663298689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG---IVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG---vv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
|+++|.|-+|||||+++|- -.|--.|+.-.-| ++....+++++++-|-=| ...+---.=+|
T Consensus 42 VavvGPpgvGKtTLiksLv------k~ytk~~l~~i~GPiTvvs~K~rRiTfiEc~nDi----------~smiD~AKvAD 105 (225)
T cd01882 42 VAVVGPPGVGKTTLIKSLV------KNYTKQNISDIKGPITVVTGKKRRLTFIECPNDI----------NAMIDIAKVAD 105 (225)
T ss_pred EEEECCCCCCHHHHHHHHH------HHHHHCCCCCCCCCEEEEECCCEEEEEEECCCHH----------HHHHHHHHHHH
T ss_conf 9998989977889999999------9985443755788879994684268999748609----------99987887643
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCCCCHH-HHHHHHHHHHHHC------CCCEEEEECC
Q ss_conf 88752022221101346667899877766750598899-99746589988-9999999999862------9948999888
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIV-GLSQIDTVDSD-TLARKKNELATQC------GQVPFEFSSI 310 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~II-VlNKiDl~~~e-~~~~~~~~l~~~~------~~~vi~ISA~ 310 (335)
+++++||++-.=-++.++.+. -|.. ..-|.++ |++-.|+.... .+.+..+.+...+ +.+.|+.|..
T Consensus 106 lVLl~iD~s~GfEmEtfEfLn-ilq~-----hG~PkV~GVltHlD~fk~~k~lrk~KK~lk~RFwtE~y~gaKlFylsg~ 179 (225)
T cd01882 106 LVLLLIDASFGFEMETFEFLN-ILQV-----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGI 179 (225)
T ss_pred EEEEEECCCCCEEEEHHHHHH-HHHH-----CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 368886166553520899999-9997-----5999437885443101557889999999999999986599568863353
Q ss_pred C
Q ss_conf 7
Q gi|254780648|r 311 T 311 (335)
Q Consensus 311 t 311 (335)
.
T Consensus 180 ~ 180 (225)
T cd01882 180 V 180 (225)
T ss_pred C
T ss_conf 2
No 314
>KOG0448 consensus
Probab=98.12 E-value=5.5e-06 Score=56.11 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=75.0
Q ss_pred ECEEEEECCCCCCCEEEEEECCCC-------------CHH-------------------H----HHHHCCCEEC--CE--
Q ss_conf 011244216777530354101454-------------012-------------------1----2110000001--02--
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAK-------------PKI-------------------A----DYPFTTLYPN--LG-- 199 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak-------------~kI-------------------a----~ypFTT~~P~--lG-- 199 (335)
.-|++.|..|+||||++||+-..+ ..| + +|+--++.|- +|
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~ 189 (749)
T KOG0448 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAG 189 (749)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 47999578777689999999987207666655312346631467731155168873432188877778751733003765
Q ss_pred ----EEEECC------EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf ----663298------6899822642124731167751234433333578875202222110134666789987776675
Q gi|254780648|r 200 ----IVKEGY------KEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSEL 269 (335)
Q Consensus 200 ----vv~~~~------~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L 269 (335)
|+..++ ..++++|-||+=-++ +-.-| .-+|.+.+|+.|+|+-+.+.-. +.|.+-+...-
T Consensus 190 sLlrV~~p~~~csLLrnDivliDsPGld~~s-e~tsw---id~~cldaDVfVlV~NaEntlt-------~sek~Ff~~vs 258 (749)
T KOG0448 190 SLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS-ELTSW---IDSFCLDADVFVLVVNAENTLT-------LSEKQFFHKVS 258 (749)
T ss_pred EEEEEEECCCCCHHHHCCCEEECCCCCCCCH-HHHHH---HHHHHHCCCEEEEEECCCCHHH-------HHHHHHHHHHH
T ss_conf 0689994286321330550120588888860-24599---9976440775899961763868-------98999999854
Q ss_pred CCCCEE-EEEECCCCCCH--HHHHHHHHHHHH-------HCCCCEEEEECC
Q ss_conf 059889-99974658998--899999999998-------629948999888
Q gi|254780648|r 270 RKKIEI-VGLSQIDTVDS--DTLARKKNELAT-------QCGQVPFEFSSI 310 (335)
Q Consensus 270 ~~Kp~I-IVlNKiDl~~~--e~~~~~~~~l~~-------~~~~~vi~ISA~ 310 (335)
.+||-| |+-||+|.... +..+.+.+.+.+ ...+.+|++||.
T Consensus 259 ~~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448 259 EEKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred CCCCCEEEEECHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEECC
T ss_conf 048847999640122026377899999988751743366636736998453
No 315
>KOG1707 consensus
Probab=98.08 E-value=6.5e-07 Score=61.72 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=90.2
Q ss_pred CCCCCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEECCC-CCHHHHHHHCCCEECC-EEEEE--CCEEEEEECCCCCCC
Q ss_conf 6775302689999976301124421677753035410145-4012121100000010-26632--986899822642124
Q gi|254780648|r 143 PGILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVTRA-KPKIADYPFTTLYPNL-GIVKE--GYKEFILADIPGIIK 218 (335)
Q Consensus 143 ~G~~G~~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~a-k~kIa~ypFTT~~P~l-Gvv~~--~~~~~~i~D~PGlIe 218 (335)
.+...-++.+..= =.+|.+|+|||.||++.-+. -.. +|-+||-.++. -.+.. ..+-.++-|++=. +
T Consensus 416 ~~~~~~~R~Vf~C-------~V~G~k~~GKs~lL~sflgr~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~ 485 (625)
T KOG1707 416 RKKKQTDRKVFQC-------FVVGPKNCGKSALLQSFLGRSMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-D 485 (625)
T ss_pred HCCCCCCCEEEEE-------EEECCCCCCHHHHHHHHHCCCCCC--CCCCCCCCCEEEEEEEECCCCCEEEEEECCCC-C
T ss_conf 2014553014478-------887777774289999886334323--33467787603243254154125888644754-2
Q ss_pred CCCCCCCCHHHHH--HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH-HHHH
Q ss_conf 7311677512344--333335788752022221101346667899877766750598899997465899889999-9999
Q gi|254780648|r 219 NAHQGAGIGDRFL--KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLAR-KKNE 295 (335)
Q Consensus 219 gA~~~~glG~~FL--rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~-~~~~ 295 (335)
. .|| +. ..|++++++.|.+.+. .+..+..+...|-.. .+-|.+.|+.|+|+-+..+... .-.+
T Consensus 486 ~---------~~l~~ke-~~cDv~~~~YDsS~p~---sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde 551 (625)
T KOG1707 486 Q---------DFLTSKE-AACDVACLVYDSSNPR---SFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDE 551 (625)
T ss_pred C---------CCCCCCC-CCEEEEEEECCCCCCH---HHHHHHHHHHHHHHC-CCCCEEEEEECCCCCHHHCCCCCCHHH
T ss_conf 3---------3456754-2003688850467732---789999999874432-578469995214533121035788388
Q ss_pred HHHHCCC-CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9986299-4899988878899999999999
Q gi|254780648|r 296 LATQCGQ-VPFEFSSITGHGIPQILECLHD 324 (335)
Q Consensus 296 l~~~~~~-~vi~ISA~tg~GI~eL~~~I~e 324 (335)
+..+.+. ++..+|..+. +=.++...|..
T Consensus 552 ~~~~~~i~~P~~~S~~~~-~s~~lf~kL~~ 580 (625)
T KOG1707 552 FCRQLGLPPPIHISSKTL-SSNELFIKLAT 580 (625)
T ss_pred HHHHCCCCCCEEECCCCC-CCCHHHHHHHH
T ss_conf 899718999805135788-87569999998
No 316
>KOG0463 consensus
Probab=98.07 E-value=4.7e-05 Score=50.48 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=41.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-----------------------------CCEEEEECCCCCCHHHHHH
Q ss_conf 05988999974658998899999999998629-----------------------------9489998887889999999
Q gi|254780648|r 270 RKKIEIVGLSQIDTVDSDTLARKKNELATQCG-----------------------------QVPFEFSSITGHGIPQILE 320 (335)
Q Consensus 270 ~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~-----------------------------~~vi~ISA~tg~GI~eL~~ 320 (335)
+.-|..+|++|+|+..+.-+.+..+.+.+... .++|.||-++|+|++-|+-
T Consensus 272 L~VPVfvVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463 272 LHVPVFVVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred HCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCEEEECCCCCCCHHHHHH
T ss_conf 26857999985055817899999999999862877650757885156447861358621235407861566778389999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780648|r 321 CLHDKI 326 (335)
Q Consensus 321 ~I~e~L 326 (335)
.+ ..|
T Consensus 352 FL-Nll 356 (641)
T KOG0463 352 FL-NLL 356 (641)
T ss_pred HH-HHC
T ss_conf 98-643
No 317
>KOG3883 consensus
Probab=98.04 E-value=1.1e-05 Score=54.19 Aligned_cols=161 Identities=12% Similarity=0.208 Sum_probs=107.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-----CEEEEEC---CEEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 124421677753035410145401212110000001-----0266329---86899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-----LGIVKEG---YKEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-----lGvv~~~---~~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
|-..|.-.+||+++|..+.-... -|.|-++|+ ++.++.+ ..++.+-||.||-.+..| | -||
T Consensus 12 VvVcG~k~VGKTaileQl~yg~~----~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~e---L----prh 80 (198)
T KOG3883 12 VVVCGMKSVGKTAILEQLLYGNH----VPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQE---L----PRH 80 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC----CCCCCCCCCHHHHEEEEEECCCCHHHEEEEEECCCCCCCHHH---H----HHH
T ss_conf 99977745228999999985167----889766663442246764068781016888652445576002---0----276
Q ss_pred -HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf -33357887520222211013466678998777667505988999974658998899-9999999986299489998887
Q gi|254780648|r 234 -TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSIT 311 (335)
Q Consensus 234 -Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~t 311 (335)
..-++..+.|.|..+....+-.+.|..|+.++ .+-.+-|.++..||+|+.++.+. ......|.+....+.+.++|..
T Consensus 81 y~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~-KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~d 159 (198)
T KOG3883 81 YFQFADAFVLVYSPMDPESFQRVELLKKEIDKH-KDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMD 159 (198)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC-CCCCCCCEEEEECHHHCCCCHHCCHHHHHHHHHHHHEEEEEEEECC
T ss_conf 710576579996379988988999999998625-5655122899730010136401278899888765302478987134
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 88999999999999985452303
Q gi|254780648|r 312 GHGIPQILECLHDKIFSIRGENE 334 (335)
Q Consensus 312 g~GI~eL~~~I~e~L~~~r~e~E 334 (335)
...+-+-.-.+...+..-..+..
T Consensus 160 R~sL~epf~~l~~rl~~pqskS~ 182 (198)
T KOG3883 160 RPSLYEPFTYLASRLHQPQSKST 182 (198)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 42245389999875058754455
No 318
>KOG2484 consensus
Probab=98.00 E-value=1.2e-05 Score=54.16 Aligned_cols=81 Identities=22% Similarity=0.179 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 23443333357887520222211013466678998777667505988999974658998899999999998629948999
Q gi|254780648|r 228 DRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEF 307 (335)
Q Consensus 228 ~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~I 307 (335)
..|.+-||-+||+|+|+|+-++.....-++=...|.. -.+|..|+||||+|+++.+.+++.+..|...++.-+|--
T Consensus 138 ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~----~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fka 213 (435)
T KOG2484 138 KEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA----HGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKA 213 (435)
T ss_pred HHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHC----CCCCEEEEEEEHHCCCCHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 9999998651057886305588777775699999745----687249999502104888899999999985588631661
Q ss_pred ECCCC
Q ss_conf 88878
Q gi|254780648|r 308 SSITG 312 (335)
Q Consensus 308 SA~tg 312 (335)
|....
T Consensus 214 st~~~ 218 (435)
T KOG2484 214 STQMQ 218 (435)
T ss_pred CCCCC
T ss_conf 53000
No 319
>pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo.
Probab=97.99 E-value=2.5e-05 Score=52.17 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=42.5
Q ss_pred CCEEEEEECCCCCCH---H------HH---HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 988999974658998---8------99---9999999986299489998887889999999999999854
Q gi|254780648|r 272 KIEIVGLSQIDTVDS---D------TL---ARKKNELATQCGQVPFEFSSITGHGIPQILECLHDKIFSI 329 (335)
Q Consensus 272 Kp~IIVlNKiDl~~~---e------~~---~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e~L~~~ 329 (335)
-|.+||++|+|.++. + .. ...++.+.-..+-..|++|++...|++-|.+.|..+|+..
T Consensus 216 iPIvVV~tKsD~me~LEKe~dy~dEhFDfIqq~LR~fCLqyGAALiYTSvKe~kN~dlLykYl~HRiYgf 285 (490)
T pfam05783 216 IPVVVVCTKCDAMSVLEKEHDYRDEHFDFIQSHIRRFCLQYGAALIYTSVKEEKNLDLLYKYLVHKIYGF 285 (490)
T ss_pred CCEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 8779999464188887651262067789999999999986196578852354501899999999886188
No 320
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.95 E-value=1.2e-05 Score=54.04 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=70.0
Q ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
Q ss_conf 98226421247311677512344333335788752022221101346667899877766750598899997465899889
Q gi|254780648|r 209 ILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT 288 (335)
Q Consensus 209 ~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~ 288 (335)
.+.+.||....++ .++-+-++..++++.|+|+.++.... ..+|+.| ..+++.++|+||+||++...
T Consensus 13 ~i~~~~g~~~k~~------~~~~~~~~~~d~vvevvDar~P~~s~-----~~~l~~~---v~~k~~i~vlNK~DL~~~~~ 78 (322)
T COG1161 13 KIQWFPGHMKKAK------RQLKEVLKSVDVVVEVVDARDPLGTR-----NPELERI---VKEKPKLLVLNKADLAPKEV 78 (322)
T ss_pred CCCCCCCCHHHHH------HHHHHHCCCCCEEEEEEECCCCCCCC-----CCCHHHH---HCCCCCEEEEEHHHCCCHHH
T ss_conf 0255677519999------99987536676589974312688888-----7306788---55788359985132489999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99999999986299489998887889999999999
Q gi|254780648|r 289 LARKKNELATQCGQVPFEFSSITGHGIPQILECLH 323 (335)
Q Consensus 289 ~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~ 323 (335)
..+..+.+.+..+..++.+|+.++.+...+..++.
T Consensus 79 ~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~ 113 (322)
T COG1161 79 TKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALE 113 (322)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHH
T ss_conf 99999999864798655764334677654258888
No 321
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.95 E-value=6.8e-05 Score=49.48 Aligned_cols=54 Identities=24% Similarity=0.260 Sum_probs=29.0
Q ss_pred EEEEECCCCCCCEEEEEECCC-CCH---HHHHH----HCCCEECCEEEEECCEEEEEECCCCCCC
Q ss_conf 124421677753035410145-401---21211----0000001026632986899822642124
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRA-KPK---IADYP----FTTLYPNLGIVKEGYKEFILADIPGIIK 218 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~a-k~k---Ia~yp----FTT~~P~lGvv~~~~~~~~i~D~PGlIe 218 (335)
++|+|..-||||||+|+|... .-+ |...- -||.+..+ +..+. .-.++|+||+-+
T Consensus 164 ~v~~G~SGvGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~L--~~l~~-gg~iiDTPG~r~ 225 (287)
T cd01854 164 SVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL--FPLPG-GGLLIDTPGFRE 225 (287)
T ss_pred EEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEE--EECCC-CCEEEECCCCCC
T ss_conf 999889988889999874621212566667760898501415799--99289-958986898763
No 322
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.92 E-value=3e-05 Score=51.67 Aligned_cols=119 Identities=20% Similarity=0.240 Sum_probs=66.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCC---CEECCEE---EEE---CCEEEEEECCCCCC---C-CCCCCCCCHH
Q ss_conf 12442167775303541014540121211000---0001026---632---98689982264212---4-7311677512
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTT---LYPNLGI---VKE---GYKEFILADIPGII---K-NAHQGAGIGD 228 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT---~~P~lGv---v~~---~~~~~~i~D~PGlI---e-gA~~~~glG~ 228 (335)
--+||.|+|||||+|+.-- -+||++. ....-|+ -+- -..+-|++||.|=. + .+.+++..-.
T Consensus 114 YlviG~~gsGKTt~l~~Sg------l~fPl~~~~~~~~~~g~ggt~~cdwwft~~AVliDtaGry~~Q~~~~~~d~~~W~ 187 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNSG------LKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred EEEECCCCCCHHHHHHHCC------CCCCCCCCCCHHHCCCCCCCCCCCEEEECCEEEEECCCCEECCCCCCHHHHHHHH
T ss_conf 8997899986689998379------9887741001122158899855571652787999479760268886400189999
Q ss_pred HHHHHHHHHH------HHHHHCCCCC------CCHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCH
Q ss_conf 3443333357------8875202222------1101346667899877766750-5988999974658998
Q gi|254780648|r 229 RFLKHTERTH------VLLHIVSALE------ENVQAAYQCILDELSAYNSELR-KKIEIVGLSQIDTVDS 286 (335)
Q Consensus 229 ~FLrhIer~~------vLl~VVD~s~------~d~~~~~~~I~~EL~~y~~~L~-~Kp~IIVlNKiDl~~~ 286 (335)
.||+-+.+.+ -+|..||+++ +........|+.-|......|. .-|.-++++|+|++.-
T Consensus 188 ~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~PVYv~~TK~Dll~G 258 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHC
T ss_conf 99999986489899876899978999747899999999999999999999982998775998664012306
No 323
>KOG0086 consensus
Probab=97.91 E-value=2.4e-05 Score=52.18 Aligned_cols=144 Identities=18% Similarity=0.179 Sum_probs=85.0
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCH--HHH---HHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 1124421677753035410145401--212---11000000102663298689982264212473116775123443333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPK--IAD---YPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTE 235 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~k--Ia~---ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIe 235 (335)
-+-++|..-.|||.||...-..+-+ ... -.|..+.-++|. ...++.|+|++|- .+| |.+-
T Consensus 11 Kfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg---K~vKLQIWDTAGQ-----------ErF-RSVt 75 (214)
T KOG0086 11 KFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG---KTVKLQIWDTAGQ-----------ERF-RSVT 75 (214)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEECC---CEEEEEEEECCCH-----------HHH-HHHH
T ss_conf 268864688863279999998641365464420220110254057---1899998634257-----------889-9999
Q ss_pred H-----HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC---EEEEEECCCCCCHHHHH-HHHHHHHHHCCCCEEE
Q ss_conf 3-----5788752022221101346667899877766750598---89999746589988999-9999999862994899
Q gi|254780648|r 236 R-----THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKI---EIVGLSQIDTVDSDTLA-RKKNELATQCGQVPFE 306 (335)
Q Consensus 236 r-----~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp---~IIVlNKiDl~~~e~~~-~~~~~l~~~~~~~vi~ 306 (335)
| +.--+.|.|+++.|..+.+..+...... +.-| .+++-||.||-++.+.. ....++......-...
T Consensus 76 RsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~-----lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flE 150 (214)
T KOG0086 76 RSYYRGAAGALLVYDITSRDSFNALTNWLTDART-----LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLE 150 (214)
T ss_pred HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH-----HCCCCEEEEEECCHHHCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9875365642799852455569999998887776-----47996799993771214412100389988663303111122
Q ss_pred EECCCCCCHHHHHHHHHH
Q ss_conf 988878899999999999
Q gi|254780648|r 307 FSSITGHGIPQILECLHD 324 (335)
Q Consensus 307 ISA~tg~GI~eL~~~I~e 324 (335)
.||++|+|++|..-....
T Consensus 151 TSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086 151 TSALTGENVEEAFLKCAR 168 (214)
T ss_pred ECCCCCCCHHHHHHHHHH
T ss_conf 023235568999999999
No 324
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.91 E-value=1.1e-05 Score=54.26 Aligned_cols=109 Identities=21% Similarity=0.305 Sum_probs=62.3
Q ss_pred EECEEEEECCCCCCCEEEEEEC---CC-CCHHH------HHH------HCCCEE-CCEE-EEE--CCEEEEEECCCCCCC
Q ss_conf 3011244216777530354101---45-40121------211------000000-1026-632--986899822642124
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVT---RA-KPKIA------DYP------FTTLYP-NLGI-VKE--GYKEFILADIPGIIK 218 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls---~a-k~kIa------~yp------FTT~~P-~lGv-v~~--~~~~~~i~D~PGlIe 218 (335)
|=.|||||--.|||+||.-+|- ++ ..+++ ||- .-|+.- .+.. ... .+..+.++||||-+
T Consensus 20 IRNI~IiaHvdaGKTTLtE~lL~~sg~i~~~~~~~~t~~D~~~~E~eRgITI~sa~~sl~~~~~~~~~~INlIDTPGh~- 98 (730)
T PRK07560 20 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGKQLALDYDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV- 98 (730)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHCCCCEEECCEEEEEEECCCCEEEEEECCCCCC-
T ss_conf 5289999379989899999999964998653479864178859999729857521102898756983789998196973-
Q ss_pred CCCCCCCCHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 731167751234433333----578875202222110134666789987776675059889999746589
Q gi|254780648|r 219 NAHQGAGIGDRFLKHTER----THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTV 284 (335)
Q Consensus 219 gA~~~~glG~~FLrhIer----~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~ 284 (335)
+|.-.++| +|..|.|||+.+---. +-+.+.+.... ...|.++++||+|.+
T Consensus 99 ----------DF~~Ev~~aLrv~DgAvvVvdav~GV~~-qTe~v~rqa~~-----~~~p~ilfINKmDR~ 152 (730)
T PRK07560 99 ----------DFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALE-----ERVRPVLFINKVDRL 152 (730)
T ss_pred ----------HHHHHHHHHHHHHCEEEEEEECCCCCCC-HHHHHHHHHHH-----CCCCEEEEEECCCCC
T ss_conf ----------0599999999885878999978988773-18999999987-----799979998686623
No 325
>KOG1424 consensus
Probab=97.88 E-value=2.1e-05 Score=52.55 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 123443333357887520222211013466678998777667505-9889999746589988999999999986299489
Q gi|254780648|r 227 GDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRK-KIEIVGLSQIDTVDSDTLARKKNELATQCGQVPF 305 (335)
Q Consensus 227 G~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~-Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi 305 (335)
..+-.|-+||+|++|.+||+-++-..- ..-|+.|-++... |.-++++||+||+.++........+.+. +.+++
T Consensus 165 WRQLWRVlErSDivvqIVDARnPllfr-----~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~-ni~~v 238 (562)
T KOG1424 165 WRQLWRVLERSDIVVQIVDARNPLLFR-----SPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQN-NIPVV 238 (562)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCC-----CHHHHHHHHCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHC-CCEEE
T ss_conf 999999874324489996157863157-----864999974205431248997245318999999999998754-97399
Q ss_pred EEECCC
Q ss_conf 998887
Q gi|254780648|r 306 EFSSIT 311 (335)
Q Consensus 306 ~ISA~t 311 (335)
+.||.-
T Consensus 239 f~SA~~ 244 (562)
T KOG1424 239 FFSALA 244 (562)
T ss_pred EEECCC
T ss_conf 974120
No 326
>KOG4252 consensus
Probab=97.88 E-value=3.2e-05 Score=51.44 Aligned_cols=152 Identities=17% Similarity=0.182 Sum_probs=90.9
Q ss_pred EEEEECCCCCCCEEEEEECCC------CCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHH--H-H
Q ss_conf 124421677753035410145------401212110000001026632986899822642124731167751234--4-3
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRA------KPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRF--L-K 232 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~a------k~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~F--L-r 232 (335)
+-+||--.+||||+|.+.+.. +-.|+ -.|+-+.- -|...+.+..++|+.|-- +| . +
T Consensus 23 ~vivGng~VGKssmiqryCkgifTkdykktIg-vdflerqi---~v~~Edvr~mlWdtagqe-----------EfDaItk 87 (246)
T KOG4252 23 FVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIG-VDFLERQI---KVLIEDVRSMLWDTAGQE-----------EFDAITK 87 (246)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHH---HHHHHHHHHHHHHHCCCH-----------HHHHHHH
T ss_conf 99987886246899999852445566540003-23526777---740899999998722316-----------6778999
Q ss_pred HHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH-HHHHHHHHHCCCCEEEEECC
Q ss_conf 3333-578875202222110134666789987776675059889999746589988999-99999998629948999888
Q gi|254780648|r 233 HTER-THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLA-RKKNELATQCGQVPFEFSSI 310 (335)
Q Consensus 233 hIer-~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~-~~~~~l~~~~~~~vi~ISA~ 310 (335)
.-.| +..-+.|...++....+....+.++++ .+..+.|.++|-||+|+++...+. ...+.+.+.+....+-+|++
T Consensus 88 Ayyrgaqa~vLVFSTTDr~SFea~~~w~~kv~---~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvk 164 (246)
T KOG4252 88 AYYRGAQASVLVFSTTDRYSFEATLEWYNKVQ---KETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVK 164 (246)
T ss_pred HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHH---HHHCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87425640489985451777899999999999---875568758764220056765213588899999864343216666
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 788999999999999985452
Q gi|254780648|r 311 TGHGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 311 tg~GI~eL~~~I~e~L~~~r~ 331 (335)
...|+.+....|.+.+.+...
T Consensus 165 ed~NV~~vF~YLaeK~~q~~k 185 (246)
T KOG4252 165 EDFNVMHVFAYLAEKLTQQKK 185 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 540067799999999999998
No 327
>pfam00735 Septin Septin. Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerize to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis.
Probab=97.87 E-value=2.7e-05 Score=51.88 Aligned_cols=130 Identities=20% Similarity=0.293 Sum_probs=69.5
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHH-HHHHH-------CC-CEECCEEEEECC--EEEEEECCCCCCCCCCCCCC-----
Q ss_conf 1244216777530354101454012-12110-------00-000102663298--68998226421247311677-----
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKI-ADYPF-------TT-LYPNLGIVKEGY--KEFILADIPGIIKNAHQGAG----- 225 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kI-a~ypF-------TT-~~P~lGvv~~~~--~~~~i~D~PGlIegA~~~~g----- 225 (335)
|=+||-...|||||+|+|-++...- ..+|- |+ +.++...+..++ ..++++||||+=+......-
T Consensus 7 imvvG~sGlGKTTfiNtL~~~~~~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtiiDTpGfGd~i~n~~~~~~I~ 86 (280)
T pfam00735 7 LMVVGESGLGKTTLINTLFLTDLYPERGIPGPSEKIKKTVEIKATTVEIEEDGVKLNLTVIDTPGFGDAIDNSNCWKPIV 86 (280)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 99977999978999999857857786678884335567753488999998899899999998998423345166699999
Q ss_pred --CHHHH---HH---HHHH-------HHHHHHHCCCCCCCHH-HHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCHHH
Q ss_conf --51234---43---3333-------5788752022221101-34666789987776675059-8899997465899889
Q gi|254780648|r 226 --IGDRF---LK---HTER-------THVLLHIVSALEENVQ-AAYQCILDELSAYNSELRKK-IEIVGLSQIDTVDSDT 288 (335)
Q Consensus 226 --lG~~F---Lr---hIer-------~~vLl~VVD~s~~d~~-~~~~~I~~EL~~y~~~L~~K-p~IIVlNKiDl~~~e~ 288 (335)
+-.+| |. .+.| .++.+|.|+.+..... -|++.++ +| .++ ..|=|+.|+|.+.+++
T Consensus 87 ~yI~~qf~~yl~eE~~i~R~~~~D~RVH~cLYFI~Ptgh~L~~lDi~~mk-~L-------s~~vNvIPVIaKADtLT~~E 158 (280)
T pfam00735 87 EYIDEQFEQYLRDESRLNRTSIVDNRVHCCLYFISPTGHGLKPLDVEFMK-KL-------HEKVNIIPVIAKADTLTPDE 158 (280)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHH-HH-------HCCCCEEEEEECCCCCCHHH
T ss_conf 99999999999986475667778884379999756888888688999999-87-------14465366662145589999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999986
Q gi|254780648|r 289 LARKKNELATQ 299 (335)
Q Consensus 289 ~~~~~~~l~~~ 299 (335)
+....+.+.+.
T Consensus 159 l~~~K~~I~~~ 169 (280)
T pfam00735 159 LQRFKKRIRAE 169 (280)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 328
>KOG0393 consensus
Probab=97.81 E-value=0.00011 Score=48.16 Aligned_cols=152 Identities=22% Similarity=0.207 Sum_probs=91.4
Q ss_pred CEEEEECCCCCCCEEEEEECCC-CCHHHHHHHCCCEECCE-EEEEC-CE--EEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 1124421677753035410145-40121211000000102-66329-86--89982264212473116775123443333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRA-KPKIADYPFTTLYPNLG-IVKEG-YK--EFILADIPGIIKNAHQGAGIGDRFLKHTE 235 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~a-k~kIa~ypFTT~~P~lG-vv~~~-~~--~~~i~D~PGlIegA~~~~glG~~FLrhIe 235 (335)
.+-+||-..+||++||-..|.. =|. .|- .|..-|.. .+..+ ++ .+.++||.|=-+ ++=||++-
T Consensus 6 K~VvVGDga~GKT~ll~~~t~~~fp~--~yv-PTVFdnys~~v~V~dg~~v~L~LwDTAGqed---------YDrlRpls 73 (198)
T KOG0393 6 KCVVVGDGAVGKTCLLISYTTNAFPE--EYV-PTVFDNYSANVTVDDGKPVELGLWDTAGQED---------YDRLRPLS 73 (198)
T ss_pred EEEEECCCCCCCEEEEEEECCCCCCC--CCC-CEEECCCEEEEEECCCCEEEEEEEECCCCCC---------CCCCCCCC
T ss_conf 99998988767458898843576866--545-6387562389996489789986331479730---------11336367
Q ss_pred H--HHHHHHHCCCCCCCHHHH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHH------------HHHHHHH
Q ss_conf 3--578875202222110134-66678998777667505988999974658998899-999------------9999986
Q gi|254780648|r 236 R--THVLLHIVSALEENVQAA-YQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARK------------KNELATQ 299 (335)
Q Consensus 236 r--~~vLl~VVD~s~~d~~~~-~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~------------~~~l~~~ 299 (335)
. +++++...++.++...+. -..+.-|+..|.+ .-|.++|.+|.||.+.... .+. -.++.+.
T Consensus 74 Y~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp---~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~ 150 (198)
T KOG0393 74 YPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP---NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKE 150 (198)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 78888899998769826688877510688996389---998899821277653878899987465786567899999998
Q ss_pred CC-CCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 29-94899988878899999999999998
Q gi|254780648|r 300 CG-QVPFEFSSITGHGIPQILECLHDKIF 327 (335)
Q Consensus 300 ~~-~~vi~ISA~tg~GI~eL~~~I~e~L~ 327 (335)
.+ ...+.+||++.+|+++..+.-.....
T Consensus 151 iga~~y~EcSa~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393 151 IGAVKYLECSALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred HCCCEEEEEHHHHHCCCHHHHHHHHHHHH
T ss_conf 59511232017563771888999999984
No 329
>TIGR00650 MG442 GTP-binding conserved hypothetical protein; InterPro: IPR005289 This is a GTP-binding domain, that was found in proteins from various families (Ras GTPase superfamily, HSR1-related GTP-binding protein), which perform different functions.; GO: 0005525 GTP binding.
Probab=97.81 E-value=4.4e-06 Score=56.71 Aligned_cols=53 Identities=28% Similarity=0.407 Sum_probs=33.2
Q ss_pred EECCCCCCC-------------EEEEEECCCCC--HH--HHHHHCCCEECCEEE------EECCEEEEEECCCCCCCCC
Q ss_conf 421677753-------------03541014540--12--121100000010266------3298689982264212473
Q gi|254780648|r 165 IGLPNAGKS-------------TFLASVTRAKP--KI--ADYPFTTLYPNLGIV------KEGYKEFILADIPGIIKNA 220 (335)
Q Consensus 165 VG~PNaGKS-------------TLln~ls~ak~--kI--a~ypFTT~~P~lGvv------~~~~~~~~i~D~PGlIegA 220 (335)
+|+||+||| ||||+|.+.|. .| --|- .+..+|.. +..+.....+|-||.+-.|
T Consensus 1 ~G~PNVGKSkieYktaievaaGsliN~L~~kr~d~avRaikYL---keRkLGRatFLPLDRieG~~a~~~~~aG~T~Ra 76 (123)
T TIGR00650 1 IGVPNVGKSKIEYKTAIEVAAGSLINLLLNKRMDDAVRAIKYL---KERKLGRATFLPLDRIEGNEAKVADRAGVTGRA 76 (123)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH---HHCCCCCEECCCCCCCCCCEEEECCCCCCCCEE
T ss_conf 9868987642102345567778899998621234278888876---520245200164421257466651789840001
No 330
>KOG1673 consensus
Probab=97.80 E-value=0.00014 Score=47.62 Aligned_cols=153 Identities=16% Similarity=0.254 Sum_probs=96.9
Q ss_pred CEEEEECCCCCCCEEEEEECC-CCCHHHHHHHCCCEECC--EEEE--ECCEEEEEECCCCCCCCCCCCCCCHHHHHHHH-
Q ss_conf 112442167775303541014-54012121100000010--2663--29868998226421247311677512344333-
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTR-AKPKIADYPFTTLYPNL--GIVK--EGYKEFILADIPGIIKNAHQGAGIGDRFLKHT- 234 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~-ak~kIa~ypFTT~~P~l--Gvv~--~~~~~~~i~D~PGlIegA~~~~glG~~FLrhI- 234 (335)
-|+|+|-|..||+||+-.--. ..- ..|.-| +--|. -.+. .-+-.|.++|+-|- .+|..||
T Consensus 22 kv~llGD~qiGKTs~mvkYV~~~~d--e~~~q~-~GvN~mdkt~~i~~t~IsfSIwdlgG~-----------~~~~n~lP 87 (205)
T KOG1673 22 KVGLLGDAQIGKTSLMVKYVQNEYD--EEYTQT-LGVNFMDKTVSIRGTDISFSIWDLGGQ-----------REFINMLP 87 (205)
T ss_pred EEEEECCCCCCCEEEEHHHHCCHHH--HHHHHH-HCCCCEEEEEEECCEEEEEEEEECCCC-----------HHHHCCCC
T ss_conf 9985136545835430445413127--888887-474002107886240899998743774-----------75540476
Q ss_pred ---HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC---CHH---HHHHHHHHHHHHCCCCEE
Q ss_conf ---33578875202222110134666789987776675059889999746589---988---999999999986299489
Q gi|254780648|r 235 ---ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTV---DSD---TLARKKNELATQCGQVPF 305 (335)
Q Consensus 235 ---er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~---~~e---~~~~~~~~l~~~~~~~vi 305 (335)
..+-+|+|+.|.+.++.......+..+-..++. ..-| |+|-+|-|+. +++ ++....+.+.+..+...|
T Consensus 88 iac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk--tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~ 164 (205)
T KOG1673 88 IACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK--TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLF 164 (205)
T ss_pred EEECCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCC--CCCE-EEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 544473799999844766778889999998742577--5313-8852435766248988989999999999997378379
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9988878899999999999998545
Q gi|254780648|r 306 EFSSITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 306 ~ISA~tg~GI~eL~~~I~e~L~~~r 330 (335)
+.|+.+..|+....+.+..+++.+.
T Consensus 165 F~Sts~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673 165 FCSTSHSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 8613652029999999999981886
No 331
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.80 E-value=0.0001 Score=48.44 Aligned_cols=130 Identities=24% Similarity=0.381 Sum_probs=69.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHH---------CC-CEECCEEEEECC--EEEEEECCCCCCCCCCCCCC----
Q ss_conf 124421677753035410145401212110---------00-000102663298--68998226421247311677----
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPF---------TT-LYPNLGIVKEGY--KEFILADIPGIIKNAHQGAG---- 225 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypF---------TT-~~P~lGvv~~~~--~~~~i~D~PGlIegA~~~~g---- 225 (335)
|=+||--..|||||+|.|-++..--.+++- |+ +..+...+..++ -.++++||||+=+......-
T Consensus 7 imVvG~sGlGKsTfiNtLf~~~~~~~~~~~~~~~~~~~~t~~i~~~~~~i~e~g~~l~LtviDTpGfGd~i~n~~~~~~I 86 (276)
T cd01850 7 IMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPI 86 (276)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 99976899988999999747857787777881320568882589999999639989999999768841223603409999
Q ss_pred ---CHHHH---HH---HHHH--------HHHHHHHCCCCCCCHHH-HHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCH
Q ss_conf ---51234---43---3333--------57887520222211013-4666789987776675059-88999974658998
Q gi|254780648|r 226 ---IGDRF---LK---HTER--------THVLLHIVSALEENVQA-AYQCILDELSAYNSELRKK-IEIVGLSQIDTVDS 286 (335)
Q Consensus 226 ---lG~~F---Lr---hIer--------~~vLl~VVD~s~~d~~~-~~~~I~~EL~~y~~~L~~K-p~IIVlNKiDl~~~ 286 (335)
+-.+| |. .+.| ..+.+|.|..+.....+ |++.+ + +|.++ ..|=|+.|+|.+.+
T Consensus 87 ~~yI~~qf~~yl~eE~~i~R~~~~~D~RVH~cLYFI~Ptgh~L~~lDi~~m-k-------~Ls~~vNvIPVIaKADtlT~ 158 (276)
T cd01850 87 VDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFM-K-------RLSKRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHH-H-------HHCCCCCEEEEEECCCCCCH
T ss_conf 999999999999998531457888777448999996788888879999999-9-------96275645667851666999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999986
Q gi|254780648|r 287 DTLARKKNELATQ 299 (335)
Q Consensus 287 e~~~~~~~~l~~~ 299 (335)
+++....+.+.+.
T Consensus 159 ~El~~~K~~I~~~ 171 (276)
T cd01850 159 EELKEFKQRIMED 171 (276)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 332
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=6.2e-05 Score=49.73 Aligned_cols=150 Identities=24% Similarity=0.278 Sum_probs=80.3
Q ss_pred EEEECEEEEECCCCCCCEEEEEECCCCCH-----------HHHHH-----HCCCEECCEEEEECCEEEEEECCCCC----
Q ss_conf 76301124421677753035410145401-----------21211-----00000010266329868998226421----
Q gi|254780648|r 157 KLIADIGIIGLPNAGKSTFLASVTRAKPK-----------IADYP-----FTTLYPNLGIVKEGYKEFILADIPGI---- 216 (335)
Q Consensus 157 k~iaDVglVG~PNaGKSTLln~ls~ak~k-----------Ia~yp-----FTT~~P~lGvv~~~~~~~~i~D~PGl---- 216 (335)
|....||-+|--+-||+||-.|||..-.+ |-+-| .-|+++..--++..++.+..+|-||-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHCCCEECCCEEEEECCCCEEEECCCCCHHHHH
T ss_conf 87147878614247635289999999986324010333443048267645725401005886388148861689748999
Q ss_pred ---CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE-EEEECCCCCCHHHHHHH
Q ss_conf ---24731167751234433333578875202222110134666789987776675059889-99974658998899999
Q gi|254780648|r 217 ---IKNAHQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEI-VGLSQIDTVDSDTLARK 292 (335)
Q Consensus 217 ---IegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~I-IVlNKiDl~~~e~~~~~ 292 (335)
|-||.+.- --+.||.+++- |+.+- ..+-|- ... ..-|.| +.+||+|+++.+++.++
T Consensus 90 KNMItgAaqmD--------------gAILVVsA~dG-pmPqT--rEHiLl--arq-vGvp~ivvflnK~Dmvdd~ellel 149 (394)
T COG0050 90 KNMITGAAQMD--------------GAILVVAATDG-PMPQT--REHILL--ARQ-VGVPYIVVFLNKVDMVDDEELLEL 149 (394)
T ss_pred HHHHHHHHHCC--------------CCEEEEECCCC-CCCCC--HHHHHH--HHH-CCCCEEEEEEECCCCCCCHHHHHH
T ss_conf 98764077537--------------62899984789-99860--564201--234-288579999742236686899999
Q ss_pred H----HHHHHHCC-----CCEEEEECCCC-CC-------HHHHHHHHHHHH
Q ss_conf 9----99998629-----94899988878-89-------999999999999
Q gi|254780648|r 293 K----NELATQCG-----QVPFEFSSITG-HG-------IPQILECLHDKI 326 (335)
Q Consensus 293 ~----~~l~~~~~-----~~vi~ISA~tg-~G-------I~eL~~~I~e~L 326 (335)
. .++...++ .|++.-||+.- +| |.+|++++-+++
T Consensus 150 VemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 150 VEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEECHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999999999973999877633411233310377216789999999998548
No 333
>KOG0097 consensus
Probab=97.76 E-value=9.1e-05 Score=48.72 Aligned_cols=146 Identities=22% Similarity=0.259 Sum_probs=89.3
Q ss_pred EEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE--EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH--
Q ss_conf 442167775303541014540121211000000102--663298--68998226421247311677512344333335--
Q gi|254780648|r 164 IIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG--IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT-- 237 (335)
Q Consensus 164 lVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG--vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~-- 237 (335)
+||--.+|||.||...|-.+ -.||-|-| +-...| +++..+ -++.++|+.|- .+| |.+-|+
T Consensus 16 iigdmgvgkscllhqftekk-fmadcpht-igvefgtriievsgqkiklqiwdtagq-----------erf-ravtrsyy 81 (215)
T KOG0097 16 IIGDMGVGKSCLLHQFTEKK-FMADCPHT-IGVEFGTRIIEVSGQKIKLQIWDTAGQ-----------ERF-RAVTRSYY 81 (215)
T ss_pred EECCCCCCHHHHHHHHHHHH-HHHCCCCC-CCEECCEEEEEEECCEEEEEEEECCCH-----------HHH-HHHHHHHH
T ss_conf 87246554778888887767-75059852-403123069996074899997313257-----------989-99889886
Q ss_pred ---HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC---EEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECC
Q ss_conf ---788752022221101346667899877766750598---899997465899889-9999999998629948999888
Q gi|254780648|r 238 ---HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKI---EIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSI 310 (335)
Q Consensus 238 ---~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp---~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~ 310 (335)
.--+.|.|++.+.....+..+...-+ . +..| .+++-||.|+-+... ..+..+++.+..+...+..||+
T Consensus 82 rgaagalmvyditrrstynhlsswl~dar----~-ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~sak 156 (215)
T KOG0097 82 RGAAGALMVYDITRRSTYNHLSSWLTDAR----N-LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAK 156 (215)
T ss_pred CCCCCEEEEEEEHHHHHHHHHHHHHHHHH----H-CCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCC
T ss_conf 06665068997411334666888886534----1-489971899965611144503786899998887559089981232
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 788999999999999985
Q gi|254780648|r 311 TGHGIPQILECLHDKIFS 328 (335)
Q Consensus 311 tg~GI~eL~~~I~e~L~~ 328 (335)
+|+++++-.-...+.+.+
T Consensus 157 tg~nvedafle~akkiyq 174 (215)
T KOG0097 157 TGQNVEDAFLETAKKIYQ 174 (215)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 367668999999999997
No 334
>pfam09547 Spore_IV_A Stage IV sporulation protein A (spore_IV_A). SpoIVA is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.74 E-value=0.00019 Score=46.83 Aligned_cols=160 Identities=22% Similarity=0.253 Sum_probs=88.6
Q ss_pred EEEEECCCCCCCEEEEEEC--CCCCHHHH----------HH-------HCCCEEC----CEE-EEE-C--CEEEEEECCC
Q ss_conf 1244216777530354101--45401212----------11-------0000001----026-632-9--8689982264
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVT--RAKPKIAD----------YP-------FTTLYPN----LGI-VKE-G--YKEFILADIP 214 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls--~ak~kIa~----------yp-------FTT~~P~----lGv-v~~-~--~~~~~i~D~P 214 (335)
+|.||.=-.|||||+.+.- -.-|.|.| .| -.|..|. -.+ +.. + ..++.++|--
T Consensus 20 iGVVGPVRTGKSTFIKrFMe~~VlPnI~~~~~keRa~DELPQS~aGktIMTTEPKFVP~eAv~I~l~~~~~~kVRLiDCV 99 (492)
T pfam09547 20 IGVVGPVRTGKSTFIKRFMELLVLPNIENEYKKERAKDELPQSGSGKTIMTTEPKFVPNEAVEIKLDDGLKFKVRLVDCV 99 (492)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCEEEEEEEEEC
T ss_conf 99626720673669999999854688898778776430377678998133368876653104888369844899999652
Q ss_pred CC-CCCCC---CCCC-------CH---HHHHH--------HHHHHHHHHHHC--CCCC-----CCHHHHHHHHHHHHHHH
Q ss_conf 21-24731---1677-------51---23443--------333357887520--2222-----11013466678998777
Q gi|254780648|r 215 GI-IKNAH---QGAG-------IG---DRFLK--------HTERTHVLLHIV--SALE-----ENVQAAYQCILDELSAY 265 (335)
Q Consensus 215 Gl-IegA~---~~~g-------lG---~~FLr--------hIer~~vLl~VV--D~s~-----~d~~~~~~~I~~EL~~y 265 (335)
|. ++||. ++-+ |- +-|-+ -|..-.-|=.|| |.|= ++..+.-+.+.+||+.
T Consensus 100 GY~V~gA~Gy~e~~~~RmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dIpRe~Y~eAEervI~ELk~- 178 (492)
T pfam09547 100 GYIVEGALGYEEEDGPRMVKTPWFDEEIPFEEAAEIGTRKVITEHSTIGLVVTTDGSITDIPRENYVEAEERVIEELKE- 178 (492)
T ss_pred CEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH-
T ss_conf 5675575555468975130489878887868887646541331577144999568875676644423579999999997-
Q ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 667505988999974658998899999999998629948999888788999999999999985
Q gi|254780648|r 266 NSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILECLHDKIFS 328 (335)
Q Consensus 266 ~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e~L~~ 328 (335)
..||.++++|-.+- ..++..++..++.+.++.+++++++..- .-+++...+.+.|++
T Consensus 179 ----i~KPFiillNs~~P-~s~et~~L~~eL~ekY~v~Vl~vnc~~m-~~~DI~~Il~~vLyE 235 (492)
T pfam09547 179 ----IGKPFIILLNSQRP-YSEETKELRDELEEKYDVPVLPVNCAQM-TEEDITEILEEVLYE 235 (492)
T ss_pred ----HCCCEEEEEECCCC-CCHHHHHHHHHHHHHHCCCEEEEEHHHC-CHHHHHHHHHHHHHC
T ss_conf ----09988999838998-9989999999999985995799677975-999999999998633
No 335
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.73 E-value=3.2e-05 Score=51.50 Aligned_cols=137 Identities=20% Similarity=0.328 Sum_probs=68.8
Q ss_pred EEEEECCCCCCCEEEEEEC------CCCCHHHHHHHCCCEE--------------CCEE----E-----------EECCE
Q ss_conf 1244216777530354101------4540121211000000--------------1026----6-----------32986
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVT------RAKPKIADYPFTTLYP--------------NLGI----V-----------KEGYK 206 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls------~ak~kIa~ypFTT~~P--------------~lGv----v-----------~~~~~ 206 (335)
|+|||.+-|||+|.+.+|. ..+.+|+ +-|.+. .+|+ + +..+.
T Consensus 213 valVGPTGVGKTTTiAKLAA~~~l~~~~~kV~---lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~~ 289 (412)
T PRK05703 213 VALVGPTGVGKTTTLAKLAARYALEEGKDKVA---LITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLANC 289 (412)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE---EEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCC
T ss_conf 99988888756769999999999972998179---998376777799999999997197379847999999999871589
Q ss_pred EEEEECCCCCCCCCCCCCCC---HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 89982264212473116775---123443333357887520222211013466678998777667505988999974658
Q gi|254780648|r 207 EFILADIPGIIKNAHQGAGI---GDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDT 283 (335)
Q Consensus 207 ~~~i~D~PGlIegA~~~~gl---G~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl 283 (335)
+++++||||.= +.+... =..||+...... ...|++++.. .+.+.+-+..|.. -.+.=++++|.|-
T Consensus 290 dlILIDTaG~s---~~d~~~~~eL~~~~~~~~~~~-~~LVlsat~~-----~~dl~~i~~~f~~---~~~~~lI~TKlDE 357 (412)
T PRK05703 290 DLILIDTAGRS---QRDPRLISELKALIENSKPID-VYLVLSATTK-----YRDLKDIVKHFSR---LPLDGLILTKLDE 357 (412)
T ss_pred CEEEEECCCCC---CCCHHHHHHHHHHHHHCCCCC-EEEEECCCCC-----HHHHHHHHHHHCC---CCCCEEEEEEECC
T ss_conf 97999689889---789999999999986248871-8999759899-----8999999998467---9998799971128
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 99889999999999862994899988878899999
Q gi|254780648|r 284 VDSDTLARKKNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 284 ~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
.. .+-.++.- ....+.++-++| +|++|.+=
T Consensus 358 t~--~~G~il~~-~~~~~lplsy~t--~GQ~VPeD 387 (412)
T PRK05703 358 TS--SLGSILSL-LIESGLPISYLT--DGQRVPDD 387 (412)
T ss_pred CC--CCCHHHHH-HHHHCCCEEEEE--CCCCCHHH
T ss_conf 99--86299999-999887969994--69997243
No 336
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.73 E-value=0.00025 Score=46.05 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=31.7
Q ss_pred EEEEECCCCCCCEEEEEECC-CCCHHHHHH-------HCCCEECCEEEEECCEEEEEECCCCCC
Q ss_conf 12442167775303541014-540121211-------000000102663298689982264212
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTR-AKPKIADYP-------FTTLYPNLGIVKEGYKEFILADIPGII 217 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~-ak~kIa~yp-------FTT~~P~lGvv~~~~~~~~i~D~PGlI 217 (335)
..|+|..-||||||+|+|.. ..-++++-. -||++..+ +..+. .-.++||||+-
T Consensus 167 svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l--~~l~~-gG~iiDTPGf~ 227 (301)
T COG1162 167 TVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVEL--FPLPG-GGWIIDTPGFR 227 (301)
T ss_pred EEEECCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCEEEE--EECCC-CCEEEECCCCC
T ss_conf 999888877699988741721211344210447898876324899--98389-98897289977
No 337
>TIGR02836 spore_IV_A stage IV sporulation protein A; InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis . A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. .
Probab=97.71 E-value=0.00033 Score=45.32 Aligned_cols=162 Identities=22% Similarity=0.266 Sum_probs=99.8
Q ss_pred EEEEECCCCCCCEEEEE---------ECCC--CCHHHH-HH----H---CCCEE----CCEE-EEE---CCEEEEEECCC
Q ss_conf 12442167775303541---------0145--401212-11----0---00000----1026-632---98689982264
Q gi|254780648|r 162 IGIIGLPNAGKSTFLAS---------VTRA--KPKIAD-YP----F---TTLYP----NLGI-VKE---GYKEFILADIP 214 (335)
Q Consensus 162 VglVG~PNaGKSTLln~---------ls~a--k~kIa~-yp----F---TT~~P----~lGv-v~~---~~~~~~i~D~P 214 (335)
||.||.==.|||||+.+ |+|+ |-++.| -| + -|..| |-.+ ++. -...+.++|.-
T Consensus 20 iGvVGpVRTGKSTfIKkFMeLlvLPNi~n~~~k~Ra~DELPQSaAGktimTTEPKFvPn~Avei~in~~~k~~vRLVDcV 99 (492)
T TIGR02836 20 IGVVGPVRTGKSTFIKKFMELLVLPNIENEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCV 99 (492)
T ss_pred EEEECCCCCCCCCHHHHEEHEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEE
T ss_conf 98662742785211111001022388861111202310688776868021048786688518998648820789999862
Q ss_pred CC-CCCCC----CCCC------C---HHHHH--------HHHHHHHHHHHHC--CCC-----CCCHHHHHHHHHHHHHHH
Q ss_conf 21-24731----1677------5---12344--------3333357887520--222-----211013466678998777
Q gi|254780648|r 215 GI-IKNAH----QGAG------I---GDRFL--------KHTERTHVLLHIV--SAL-----EENVQAAYQCILDELSAY 265 (335)
Q Consensus 215 Gl-IegA~----~~~g------l---G~~FL--------rhIer~~vLl~VV--D~s-----~~d~~~~~~~I~~EL~~y 265 (335)
|. +.||. +++- | -+-|= |-|..=+-+-+|| |.| .+|.++.=+-+.+||+.
T Consensus 100 GY~V~GA~GY~ee~kprMv~TPWYd~eIPF~EAAEIGTrKVI~dHSTiG~lvTTDGsI~dI~RedYv~AEERVveELKe- 178 (492)
T TIGR02836 100 GYIVKGALGYEEEDKPRMVSTPWYDEEIPFEEAAEIGTRKVISDHSTIGLLVTTDGSITDIPREDYVEAEERVVEELKE- 178 (492)
T ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHCCCEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC-
T ss_conf 3015785450027864011588888888723551237710115775078997117840346731340033577677640-
Q ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 66750598899997465899889999999999862994899988878899999999999998545
Q gi|254780648|r 266 NSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 266 ~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e~L~~~r 330 (335)
++||.|+|+|=.-=..+ +-.++.+++.++++.+|+.+|.. .-.+.++...+.+.|++..
T Consensus 179 ----~~KPFIilLNs~~P~~p-ET~~L~~eLe~KYDvpV~~~~v~-~m~~~Di~~vL~~~LyEFP 237 (492)
T TIGR02836 179 ----LNKPFIILLNSTHPLAP-ETKALRKELEEKYDVPVLVVDVL-EMKIKDILSVLEKVLYEFP 237 (492)
T ss_pred ----CCCCEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHHCC
T ss_conf ----79967999768897886-57999998652088445896400-0244669999998541068
No 338
>KOG0468 consensus
Probab=97.69 E-value=0.00017 Score=47.13 Aligned_cols=113 Identities=17% Similarity=0.270 Sum_probs=67.1
Q ss_pred EECEEEEECCCCCCCEEEEEECC-CCCH-----HHHHHHCCCEEC-----CEE--------EEE-CC--EEEEEECCCCC
Q ss_conf 30112442167775303541014-5401-----212110000001-----026--------632-98--68998226421
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVTR-AKPK-----IADYPFTTLYPN-----LGI--------VKE-GY--KEFILADIPGI 216 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls~-ak~k-----Ia~ypFTT~~P~-----lGv--------v~~-~~--~~~~i~D~PGl 216 (335)
+-.|||+|.--+||++|+.-|-. ..|. =++.-||+..+. +.+ +.. .. +-+.+.|+||-
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH 207 (971)
T KOG0468 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH 207 (971)
T ss_pred EEEEEEEECCCCCHHHHHHHHCEECCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCEEEEEECCCCCEEEEEEECCCCC
T ss_conf 79998861145671578776313134655554235631366424567548567613228998567672433555258875
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 24731167751234433333578875202222110134666789987776675059889999746589
Q gi|254780648|r 217 IKNAHQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTV 284 (335)
Q Consensus 217 IegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~ 284 (335)
+.= ..+.-+.+.-++..+.|||+.+.-....-++|++-++ ...|.++|+||+|.+
T Consensus 208 VnF-------~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq------~~~~i~vviNKiDRL 262 (971)
T KOG0468 208 VNF-------SDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ------NRLPIVVVINKVDRL 262 (971)
T ss_pred CCC-------HHHHHHHHHHCCEEEEEEECCCCCEEEHHHHHHHHHH------CCCCEEEEEEHHHHH
T ss_conf 550-------6888888652363799998225705209999999874------267679997416789
No 339
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=97.64 E-value=3.7e-05 Score=51.07 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=32.6
Q ss_pred EEEEECCCCCCCEEEEEEC-CCCCHHHH---HH----HCCCEECCEEEEECCEEEEEECCCCCCC
Q ss_conf 1244216777530354101-45401212---11----0000001026632986899822642124
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVT-RAKPKIAD---YP----FTTLYPNLGIVKEGYKEFILADIPGIIK 218 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls-~ak~kIa~---yp----FTT~~P~lGvv~~~~~~~~i~D~PGlIe 218 (335)
..|+|..-||||||+|+|. .+.-+++. .- -||.+-.+ +..+... .++|+||+-+
T Consensus 210 svf~GqSGVGKSSLiN~L~p~~~~~tgeIS~~~~~GrHTTt~~~L--~~l~~gG-~lIDTPG~re 271 (344)
T PRK12288 210 SIFVGQSGVGKSSLINALLPEAEILVGDVSENSGLGQHTTTTARL--YHFPHGG-DLIDSPGVRE 271 (344)
T ss_pred EEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEE--EECCCCC-EEEECCCCCC
T ss_conf 999806876788887610753342232014333886640116899--9928998-7973898765
No 340
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=97.61 E-value=0.00055 Score=43.97 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=54.9
Q ss_pred CEEEEECCCCCCCEEEEEECCCC-CHHHH---H----HHCCCEECCEEEEECCEEEEEECCCCCCCC--CCCCCCCHHHH
Q ss_conf 11244216777530354101454-01212---1----100000010266329868998226421247--31167751234
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAK-PKIAD---Y----PFTTLYPNLGIVKEGYKEFILADIPGIIKN--AHQGAGIGDRF 230 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak-~kIa~---y----pFTT~~P~lGvv~~~~~~~~i~D~PGlIeg--A~~~~glG~~F 230 (335)
-++|+|-.-||||||+|+|.... -+++. . --||.+..+=.+ +.. -.++||||+-+= .....+|...|
T Consensus 196 T~vl~G~SGVGKSTLiN~L~g~~~~~t~~is~~~~kGRHTTt~reL~~l--p~G-g~lIDTPG~Re~~l~~~~~~l~~~F 272 (353)
T PRK01889 196 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPL--PSG-GLLIDTPGMRELQLWDCEDGVEETF 272 (353)
T ss_pred EEEEECCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCEECCCEEEEEEC--CCC-CEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 8999778886699999875653453441500036995001240689994--899-5897379865467778488899977
Q ss_pred H--------------HHHHH--HHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 4--------------33333--57887520222-21101346667899877766
Q gi|254780648|r 231 L--------------KHTER--THVLLHIVSAL-EENVQAAYQCILDELSAYNS 267 (335)
Q Consensus 231 L--------------rhIer--~~vLl~VVD~s-~~d~~~~~~~I~~EL~~y~~ 267 (335)
- +|... |.|.--|=+.. ++.-++.|..|.+|..-+..
T Consensus 273 ~di~~la~~CrF~dC~H~~EPgCAV~~Ave~G~l~~~R~~sY~kL~~E~~~~~~ 326 (353)
T PRK01889 273 SDIEELAAQCRFRDCAHEAEPGCAVQAAIENGELDERRLQSYRKLQREQAYNAA 326 (353)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 989998778989389899899889999998699699999999999999999876
No 341
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=97.59 E-value=4.5e-05 Score=50.60 Aligned_cols=55 Identities=27% Similarity=0.308 Sum_probs=42.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 0598899997465899889999999999862994899988878899999999999
Q gi|254780648|r 270 RKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILECLHD 324 (335)
Q Consensus 270 ~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e 324 (335)
..-+-+||+||+||++..+..+...+..+..+.+++.+||.+++|+++|.+.+..
T Consensus 110 ~~i~pvivlnK~DL~~~~~~~~~~~~~y~~~gy~v~~~S~~~~~g~~~L~~~l~~ 164 (298)
T PRK00098 110 NDIKPIIVLNKIDLVDDLEEARERLALYRAIGYDVLELSAKEGPGLDELKPLLAG 164 (298)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 6995899964245647799999999999878997899968999899999998579
No 342
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=97.56 E-value=9e-05 Score=48.75 Aligned_cols=57 Identities=9% Similarity=0.095 Sum_probs=31.1
Q ss_pred HHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCC
Q ss_conf 788752022221-101346667899877766750598899997465899889-99999999986299
Q gi|254780648|r 238 HVLLHIVSALEE-NVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQ 302 (335)
Q Consensus 238 ~vLl~VVD~s~~-d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~ 302 (335)
+.++.|||+..- +..+......+.+ .---++++||+|++++.+ ++...+.+.+..+.
T Consensus 111 ~~~i~vvDa~~~~~~~~~~~~~~~Qi--------~~AD~vvlNK~Dl~~~~~~l~~~~~~i~~lNP~ 169 (174)
T pfam02492 111 DGVVTVVDVKNFTEGEDIPEKAPDQI--------AFADLIVINKTDLAPAVGALEKLEADLRRLNPE 169 (174)
T ss_pred CEEEEEEECHHHHHCCCCHHHHHHHH--------HHCCEEEEEHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf 45999997234330020078999999--------876999984665378276999999999997899
No 343
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.50 E-value=0.00021 Score=46.52 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=39.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 7887520222211013466678998777667-5059889999746589988999999999986299
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSE-LRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQ 302 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~-L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~ 302 (335)
|+++.|+|+-. |.... ..+|+.|-.. ...||.++|+||+||++++......+.+.+....
T Consensus 1 DvVleV~DAR~--Plss~---np~l~~~~~~~~~~K~~ilVlNK~DL~~~~~~~~W~~~~~~~~~~ 61 (172)
T cd04178 1 DVILEVLDARD--PLGCR---CPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPT 61 (172)
T ss_pred CEEEEEEEECC--CCCCC---CHHHHHHHHHHCCCCCEEEEEECHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 98999997037--86768---874999998606998489998523218989999999999841982
No 344
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00082 Score=42.93 Aligned_cols=52 Identities=27% Similarity=0.393 Sum_probs=30.0
Q ss_pred EEEEECCCCCCCEEEEEE-------C------CCCC---HHHHHHHCCCEECCE------EE--EECCEEEEEECCCC
Q ss_conf 124421677753035410-------1------4540---121211000000102------66--32986899822642
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASV-------T------RAKP---KIADYPFTTLYPNLG------IV--KEGYKEFILADIPG 215 (335)
Q Consensus 162 VglVG~PNaGKSTLln~l-------s------~ak~---kIa~ypFTT~~P~lG------vv--~~~~~~~~i~D~PG 215 (335)
-|+|--|-|||+||--+| . ..+. ..+||- .++-.-| |+ .+.+..+-+.||||
T Consensus 15 FAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM--~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 15 FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWM--EIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred EEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHH--HHHHHCCCEEEEEEEEEECCCEEEECCCCCC
T ss_conf 368856888851188999972303430550122257763422778--8887568558765787603884886147998
No 345
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=97.42 E-value=8.9e-05 Score=48.78 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=44.7
Q ss_pred HHHCCCCEEEEEECCCCCCH--HHHHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 67505988999974658998--8999999999986299-489998887889999999999999
Q gi|254780648|r 267 SELRKKIEIVGLSQIDTVDS--DTLARKKNELATQCGQ-VPFEFSSITGHGIPQILECLHDKI 326 (335)
Q Consensus 267 ~~L~~Kp~IIVlNKiDl~~~--e~~~~~~~~l~~~~~~-~vi~ISA~tg~GI~eL~~~I~e~L 326 (335)
|.+..--.+|++||+||++. -.+++..+..++-.|. +||.+||+||+|+++.+++|.+..
T Consensus 160 P~~F~~Ad~~~inK~DL~~~v~~D~ek~~~d~~~~nP~a~Ii~~S~ktg~Gl~~w~~~l~~~~ 222 (225)
T TIGR00073 160 PAMFKEADLILINKVDLAEAVGFDVEKMKADARKINPEAEIILVSAKTGKGLDEWLEFLEGKK 222 (225)
T ss_pred CHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 158874445621478899770736789999998628950799863689734789999999864
No 346
>KOG3886 consensus
Probab=97.42 E-value=0.0003 Score=45.58 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=72.6
Q ss_pred CEEEEECCCCCCCEEEEEEC-CCCCHHHHHHHCCCEECCEEEEE-CCEEEEEECCCCC---CCCCCCCCCCHHHHHH---
Q ss_conf 11244216777530354101-45401212110000001026632-9868998226421---2473116775123443---
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVT-RAKPKIADYPFTTLYPNLGIVKE-GYKEFILADIPGI---IKNAHQGAGIGDRFLK--- 232 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls-~ak~kIa~ypFTT~~P~lGvv~~-~~~~~~i~D~PGl---IegA~~~~glG~~FLr--- 232 (335)
-|-|.|+.-+||||+-+.+= +....=-..|..|++-..+.+++ ++--+-++|..|- +|+ +|+
T Consensus 6 KvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcggqe~fmen----------~~~~q~ 75 (295)
T KOG3886 6 KVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMEN----------YLSSQE 75 (295)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHEEEHHCCCCCHHHHHH----------HHHHCC
T ss_conf 3888504788743452056665656655166886116643544420010002136780999998----------876320
Q ss_pred -HH-HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
Q ss_conf -33-3357887520222211013466678998777667505988999974658998899999
Q gi|254780648|r 233 -HT-ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARK 292 (335)
Q Consensus 233 -hI-er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~ 292 (335)
|| ....+++||.|++.++...|+..-.+-|+.+-..--+-+..+.+.|+|++..+..+..
T Consensus 76 d~iF~nv~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~i 137 (295)
T KOG3886 76 DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELI 137 (295)
T ss_pred HHHHEEHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHCCCCHHHHH
T ss_conf 01010021146654212136666489999999999853974237778740300025607899
No 347
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=97.42 E-value=8.9e-05 Score=48.77 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=38.0
Q ss_pred CCCCEEEEEECCCCCCH-HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 05988999974658998-89999999999862994899988878899999999999
Q gi|254780648|r 270 RKKIEIVGLSQIDTVDS-DTLARKKNELATQCGQVPFEFSSITGHGIPQILECLHD 324 (335)
Q Consensus 270 ~~Kp~IIVlNKiDl~~~-e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e 324 (335)
..-+-+||+||+||++. +......+.+ ..+.+++.+||.+++|+++|..++..
T Consensus 140 ~g~~pvivLnK~DL~~d~~~~~~~~~~~--~~g~~v~~vSa~~~~gl~~L~~~l~~ 193 (353)
T PRK01889 140 SGAEPVVVLTKADLCEDVEEKIAEVEAL--APGVPVLAVNALDGEGVDALQAWLKP 193 (353)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHH--CCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 6996799996655667999999999985--59975999978998478999998634
No 348
>KOG1707 consensus
Probab=97.39 E-value=0.00034 Score=45.27 Aligned_cols=150 Identities=14% Similarity=0.138 Sum_probs=89.7
Q ss_pred EEEEECCCCCCCEEEEEECCCC-----CHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 1244216777530354101454-----01212110000001026632986899822642124731167751234433333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAK-----PKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTER 236 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak-----~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer 236 (335)
|-|||=.-+|||||+-++.... |.++++ .|+ | --+..+....+++|++- +++.+. .--+.|.+
T Consensus 12 IvliGD~G~GKtSLImSL~~eef~~~VP~rl~~--i~I-P--advtPe~vpt~ivD~ss----~~~~~~---~l~~Eirk 79 (625)
T KOG1707 12 IVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR--ILI-P--ADVTPENVPTSIVDTSS----DSDDRL---CLRKEIRK 79 (625)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC--CCC-C--CCCCCCCCCEEEEECCC----CCCHHH---HHHHHHHH
T ss_conf 999778886689999998763354534555776--115-8--75676767218874366----642568---89999864
Q ss_pred HHHHHHHCCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH------HHHHHHHHHHCCCCEEEEEC
Q ss_conf 578875202222110134666-78998777667505988999974658998899------99999999862994899988
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQC-ILDELSAYNSELRKKIEIVGLSQIDTVDSDTL------ARKKNELATQCGQVPFEFSS 309 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~-I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~------~~~~~~l~~~~~~~vi~ISA 309 (335)
+++++.|-+++++..++-+.. +.-++++...+..+.|.|+|-||+|..+.... ..+..++.+. +.-+.+||
T Consensus 80 A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei--EtciecSA 157 (625)
T KOG1707 80 ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI--ETCIECSA 157 (625)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHH
T ss_conf 5889999853876876544432236564415777668779983035775545564157778999875777--78876546
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 8788999999999999
Q gi|254780648|r 310 ITGHGIPQILECLHDK 325 (335)
Q Consensus 310 ~tg~GI~eL~~~I~e~ 325 (335)
++-.++.++...-.+.
T Consensus 158 ~~~~n~~e~fYyaqKa 173 (625)
T KOG1707 158 LTLANVSELFYYAQKA 173 (625)
T ss_pred HHHHHHHHHHHHHHHE
T ss_conf 5441137765454420
No 349
>pfam06858 NOG1 Nucleolar GTP-binding protein 1 (NOG1). This family represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). In S. cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. Family members include eukaryotic, bacterial and archaeal proteins.
Probab=97.36 E-value=0.00011 Score=48.31 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 23443333357887520222211--01346667899877766750598899997465
Q gi|254780648|r 228 DRFLKHTERTHVLLHIVSALEEN--VQAAYQCILDELSAYNSELRKKIEIVGLSQID 282 (335)
Q Consensus 228 ~~FLrhIer~~vLl~VVD~s~~d--~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiD 282 (335)
+.-|+|+. ++++|++|.|+.+ +.++...+.+|++. .+.+||+++|+||+|
T Consensus 7 I~AL~hL~--~~vlf~~D~Se~cgysie~Q~~L~~eik~---~f~~~p~i~V~nK~D 58 (58)
T pfam06858 7 ITALAHLR--AAVLFVFDPSEQCGYSLEEQLHLFKEIKP---LFKNKPVIVVLNKID 58 (58)
T ss_pred HHHHHHCC--CEEEEEECCCCCCCCCHHHHHHHHHHHHH---HCCCCEEEEEEECCC
T ss_conf 99998367--70899981897669899999999999998---749981899972679
No 350
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.34 E-value=0.00015 Score=47.44 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=52.9
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH-HHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 875202222110134666789987776675059889999746589988999-9999999862994899988878899999
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLA-RKKNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~-~~~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
++.|+.+.++++.. ..|..-|-... -..-.-+||+||+||++.+... +....+....+.+++.+||++++++++|
T Consensus 83 ~iiIvs~~~P~~~~--~~ldR~Lv~ae--~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l 158 (301)
T COG1162 83 AIIVVSLVDPDFNT--NLLDRYLVLAE--AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEEL 158 (301)
T ss_pred EEEEEECCCCCCCH--HHHHHHHHHHH--HCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHH
T ss_conf 99999626899898--89999999997--769957999975336761677899999999867935999537676558999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780648|r 319 LECLHDK 325 (335)
Q Consensus 319 ~~~I~e~ 325 (335)
.+.+...
T Consensus 159 ~~~l~~~ 165 (301)
T COG1162 159 AELLAGK 165 (301)
T ss_pred HHHHCCC
T ss_conf 9975588
No 351
>KOG2423 consensus
Probab=97.29 E-value=0.00068 Score=43.41 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 433333578875202222110134666789987776-6750598899997465899889999999999862994899988
Q gi|254780648|r 231 LKHTERTHVLLHIVSALEENVQAAYQCILDELSAYN-SELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSS 309 (335)
Q Consensus 231 LrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~-~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA 309 (335)
-+-|..++++++|+|+-+ |+-.- ...++.|- .+--.|-.|.|+||+||++..-....+..+.+..+.-.|--|-
T Consensus 208 yKViDSSDVvvqVlDARD--PmGTr---c~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi 282 (572)
T KOG2423 208 YKVIDSSDVVVQVLDARD--PMGTR---CKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASI 282 (572)
T ss_pred HHHHCCCCEEEEEEECCC--CCCCC---CHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEHHH
T ss_conf 875032203688521568--76654---1789999863287521688851355001888999999975227624540222
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 8788999999999999
Q gi|254780648|r 310 ITGHGIPQILECLHDK 325 (335)
Q Consensus 310 ~tg~GI~eL~~~I~e~ 325 (335)
-+..|--.|+..+++.
T Consensus 283 ~nsfGKgalI~llRQf 298 (572)
T KOG2423 283 NNSFGKGALIQLLRQF 298 (572)
T ss_pred CCCCCHHHHHHHHHHH
T ss_conf 3765216999999999
No 352
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.00092 Score=42.64 Aligned_cols=20 Identities=40% Similarity=0.835 Sum_probs=9.7
Q ss_pred EEEEECCCCCCCEEEEEECC
Q ss_conf 12442167775303541014
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTR 181 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ 181 (335)
||.||.|-.|||||+.++-+
T Consensus 72 vavvGPpGtGKsTLirSlVr 91 (1077)
T COG5192 72 VAVVGPPGTGKSTLIRSLVR 91 (1077)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99636998874689999999
No 353
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.22 E-value=0.0013 Score=41.64 Aligned_cols=54 Identities=30% Similarity=0.378 Sum_probs=35.5
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCC
Q ss_conf 99999763011244216777530354101454012121100000010266329868998226421
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGI 216 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGl 216 (335)
+.|+++-=-=+||||..-||||||++.|++. +.|.-|.+..++.--.+..-+++
T Consensus 43 Vsf~i~~GEivgllG~NGaGKSTLlk~I~Gl-----------~~P~~G~I~~~G~i~~~~~~~~l 96 (264)
T PRK13546 43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGGS-----------LSPTVGKVDRNGEVSVIAISAGL 96 (264)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCCEEEECCEEEEEEECCCC
T ss_conf 0788859989999989986199999999679-----------88887479999887488503565
No 354
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.21 E-value=0.00047 Score=44.38 Aligned_cols=136 Identities=19% Similarity=0.297 Sum_probs=66.5
Q ss_pred EEEEECCCCCCCEEEEEECC------CCCHHHHHHHCCCEEC--------------CEE----E-----------EECCE
Q ss_conf 12442167775303541014------5401212110000001--------------026----6-----------32986
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTR------AKPKIADYPFTTLYPN--------------LGI----V-----------KEGYK 206 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~------ak~kIa~ypFTT~~P~--------------lGv----v-----------~~~~~ 206 (335)
++|||.+-|||+|-+.+|.. .+-+|| +-|.+.. +|+ + +..++
T Consensus 179 ~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVa---LIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~~ 255 (404)
T PRK06995 179 FALVGPTGVGKTTTTAKLAARCVMRHGASKVA---LLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRNK 255 (404)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEE---EEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCC
T ss_conf 89866888763758999999999983898379---997687547899999999987595599959999999999970899
Q ss_pred EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH--H-HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 89982264212473116775123443333357--8-87520222211013466678998777667505988999974658
Q gi|254780648|r 207 EFILADIPGIIKNAHQGAGIGDRFLKHTERTH--V-LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDT 283 (335)
Q Consensus 207 ~~~i~D~PGlIegA~~~~glG~~FLrhIer~~--v-Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl 283 (335)
.+|++||+|. ++.+.-+-.+ |..+..+. + .+.|+.++.. ++.+.+-+..|.. -.+.=++++|.|-
T Consensus 256 dlILIDTaGr---s~rD~~~~e~-l~~l~~~~~~~~~~LVLsat~~-----~~dl~~i~~~f~~---~~~~~~I~TKLDE 323 (404)
T PRK06995 256 HIVLIDTVGM---SQRDRMVSEQ-IAMLHGAGAPVQRLLLLNATSH-----GDTLNEVVQAYRG---PGLAGCILTKLDE 323 (404)
T ss_pred CEEEEECCCC---CCCCHHHHHH-HHHHHHCCCCCEEEEEECCCCC-----HHHHHHHHHHHCC---CCCCEEEEECCCC
T ss_conf 9999809998---9768889999-9999735788528999779899-----9999999998446---9998399830406
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 9988999999999986299489998887889999
Q gi|254780648|r 284 VDSDTLARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 284 ~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
.. .+-..++-. ...+.++.+++ +|++|.+
T Consensus 324 t~--~~G~iln~~-~~~~lPlsy~T--~GQ~VPe 352 (404)
T PRK06995 324 AA--SLGGALDTV-IRHKLPLHYVS--NGQRVPE 352 (404)
T ss_pred CC--CHHHHHHHH-HHHCCCEEEEC--CCCCCCC
T ss_conf 79--723999999-99789859981--8995842
No 355
>KOG0082 consensus
Probab=97.18 E-value=0.0011 Score=42.20 Aligned_cols=131 Identities=16% Similarity=0.178 Sum_probs=77.8
Q ss_pred CCEECCEEEE----ECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH--HHH--HHHHHHHHHH
Q ss_conf 0000102663----2986899822642124731167751234433333578875202222110--134--6667899877
Q gi|254780648|r 193 TLYPNLGIVK----EGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALEENV--QAA--YQCILDELSA 264 (335)
Q Consensus 193 T~~P~lGvv~----~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d~--~~~--~~~I~~EL~~ 264 (335)
++.|+.|++. ..+..|.+.|++|= -||-+-|.|-| |..++++|+++.|+-|- .+| ..-+.+-++.
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQ---RseRrKWihcF----e~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~L 250 (354)
T KOG0082 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQ---RSERKKWIHCF----EDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKL 250 (354)
T ss_pred HCCCCCCEEEEEEEECCCCEEEEECCCC---HHHHHHHHHHH----CCCCEEEEEEEHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 4167677458999867984489707976---88763377751----6898799997643330010145410489999999
Q ss_pred HH-----HHHCCCCEEEEEECCCCCCHHH-----------------HH-------HHHHHHHHHCCCCE--EEEECCCCC
Q ss_conf 76-----6750598899997465899889-----------------99-------99999998629948--999888788
Q gi|254780648|r 265 YN-----SELRKKIEIVGLSQIDTVDSDT-----------------LA-------RKKNELATQCGQVP--FEFSSITGH 313 (335)
Q Consensus 265 y~-----~~L~~Kp~IIVlNKiDl~~~e~-----------------~~-------~~~~~l~~~~~~~v--i~ISA~tg~ 313 (335)
|+ +-+.+.+.|+.+||.||.++.- .. ....++......++ ....|..-.
T Consensus 251 F~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~ 330 (354)
T KOG0082 251 FESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQ 330 (354)
T ss_pred HHHHHCCCCCCCCCEEEEEECHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHH
T ss_conf 99996480322472799962388788886047345418578999875999999999999974155776057787604588
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998545
Q gi|254780648|r 314 GIPQILECLHDKIFSIR 330 (335)
Q Consensus 314 GI~eL~~~I~e~L~~~r 330 (335)
+|+.+.+++.+.+.+..
T Consensus 331 nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082 331 NVQFVFDAVTDTIIQNN 347 (354)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999988
No 356
>KOG0459 consensus
Probab=97.17 E-value=0.0021 Score=40.51 Aligned_cols=188 Identities=20% Similarity=0.149 Sum_probs=93.7
Q ss_pred ECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEE------ECEEEEECCCCCCCEEEEEE---
Q ss_conf 126845552267777634433267667676101367753026899999763------01124421677753035410---
Q gi|254780648|r 109 DQEGQRIILAPGGNGGFGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKLI------ADIGIIGLPNAGKSTFLASV--- 179 (335)
Q Consensus 109 ~~~~~~~~~~~GG~GG~GN~~f~s~~n~~P~~~~~G~~G~~~~~~lelk~i------aDVglVG~PNaGKSTLln~l--- 179 (335)
.......+.|+++.+..++...+--.-+. ++.....+...- -.+-++|-=-|||||+=+.|
T Consensus 33 ~~~~~~~~~a~p~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~pk~hvn~vfighVdagkstigg~il~l 102 (501)
T KOG0459 33 DQIEKGSIKARGESKRPEILEEKVVLFRK----------IALDRVVVKSCGEYPKEHVNAVFIGHVDAGKSTIGGNILFL 102 (501)
T ss_pred CCCCCCHHHCCCCCCCCCCCCCHHHHCCH----------HHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEE
T ss_conf 54443111127788987668851332021----------23303443224678778744899999964401268736789
Q ss_pred CCC---------------CCHHHHHH---H----------CCCEECCEEEEECCEEEEEECCCC-------CCCCCCCCC
Q ss_conf 145---------------40121211---0----------000001026632986899822642-------124731167
Q gi|254780648|r 180 TRA---------------KPKIADYP---F----------TTLYPNLGIVKEGYKEFILADIPG-------IIKNAHQGA 224 (335)
Q Consensus 180 s~a---------------k~kIa~yp---F----------TT~~P~lGvv~~~~~~~~i~D~PG-------lIegA~~~~ 224 (335)
|.. +.+-..|. - -|..--....+...+.|++.|.|| .|-||++
T Consensus 103 tg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~Gasq-- 180 (501)
T KOG0459 103 TGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQ-- 180 (501)
T ss_pred EEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCCHHHCCCCCH--
T ss_conf 865437789999999876133322489997376012102650541257887134367763167655556000366111--
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH--HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH----H--
Q ss_conf 7512344333335788752022221101346667--8998777667505988999974658998899999999----9--
Q gi|254780648|r 225 GIGDRFLKHTERTHVLLHIVSALEENVQAAYQCI--LDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNE----L-- 296 (335)
Q Consensus 225 glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I--~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~----l-- 296 (335)
+++-+.|+.+--......|+.= -.|-...-..+.-+..|+++||||-+..++..+.+++ +
T Consensus 181 ------------AD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~ 248 (501)
T KOG0459 181 ------------ADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQP 248 (501)
T ss_pred ------------HHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf ------------12332011320011210310366305789998862332579999950588667305668999999999
Q ss_pred -HHHC------CCCEEEEECCCCCCHHHHHH
Q ss_conf -9862------99489998887889999999
Q gi|254780648|r 297 -ATQC------GQVPFEFSSITGHGIPQILE 320 (335)
Q Consensus 297 -~~~~------~~~vi~ISA~tg~GI~eL~~ 320 (335)
.... +...+|+|..+|.++++..+
T Consensus 249 fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459 249 FLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred HHHHHCCCCCCCCEEEECCCCCCCCHHHCCC
T ss_conf 9998444689984142024645555534466
No 357
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=97.17 E-value=0.00014 Score=47.68 Aligned_cols=54 Identities=24% Similarity=0.225 Sum_probs=34.2
Q ss_pred EEEEECCCCCCCEEEEEECCC-CCHHHH---HH----HCCCEECCEEEEECCEEEEEECCCCCCC
Q ss_conf 124421677753035410145-401212---11----0000001026632986899822642124
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRA-KPKIAD---YP----FTTLYPNLGIVKEGYKEFILADIPGIIK 218 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~a-k~kIa~---yp----FTT~~P~lGvv~~~~~~~~i~D~PGlIe 218 (335)
..|+|..-||||||+|+|... .-+++. .- -||++..+ +..++. -.++|+||+-+
T Consensus 38 sv~~G~SGVGKSTLiN~L~~~~~~~t~~iS~~~~rGkHTTt~~~l--~~l~~g-g~iiDTPG~r~ 99 (161)
T pfam03193 38 SVLAGQSGVGKSTLLNALLPELDLRTGEISEKLGRGRHTTTHVEL--FPLPGG-GLLIDTPGFRE 99 (161)
T ss_pred EEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEE--EEECCC-CEEEECCCCCC
T ss_conf 999889998899999885634435777535886388511211379--980799-58985898762
No 358
>TIGR00991 3a0901s02IAP34 GTP-binding protein; InterPro: IPR005688 Two integral outer envelope GTPases, Toc34 and Toc86, are proposed to regulate the recognition and translocation of nuclear-encoded preproteins during the early stages of protein import into chloroplasts.. The cytosolic region of Toc34 reveals 34% alpha-helical and 260eta-strand structure and is stabilized by intramolecular electrostatic interaction. Toc34 binds both chloroplast preproteins and isolated transit peptides in a guanosine triphosphate- (GTP-) dependent mechanism . ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=97.15 E-value=0.00022 Score=46.40 Aligned_cols=121 Identities=22% Similarity=0.300 Sum_probs=70.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCC-HHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCC---CCHHHHHHHHHH-
Q ss_conf 12442167775303541014540-1212110000001026632986899822642124731167---751234433333-
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKP-KIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGA---GIGDRFLKHTER- 236 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~-kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~---glG~~FLrhIer- 236 (335)
|-..|.--+||||-+|.+-..+. .|+.+----+.|.+-.-...+..+-++|+||||||-.-+. .+=.+|| +..
T Consensus 42 ~lvmGkGGvGksstvn~~~Ge~~~~~s~fqseG~rP~~~sr~r~GftlniidtPGlieGGy~n~~a~~iik~fl--l~~t 119 (328)
T TIGR00991 42 ILVMGKGGVGKSSTVNSIIGERVAAVSAFQSEGLRPVLVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL--LDKT 119 (328)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH--HHHH
T ss_conf 88860687663101223332023200000025886326651246615775327861015303378999999988--5312
Q ss_pred HHHHHHH--CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH
Q ss_conf 5788752--0222211013466678998777667505988999974658998
Q gi|254780648|r 237 THVLLHI--VSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS 286 (335)
Q Consensus 237 ~~vLl~V--VD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~ 286 (335)
.++|+|| +|+-.-|-.+. ..+..--..|..++-+|. +++++...+.++
T Consensus 120 idvllyvdrld~yr~d~ld~-~v~~ait~~fGk~iW~~~-~~~lthaq~sPP 169 (328)
T TIGR00991 120 IDVLLYVDRLDAYRVDDLDK-QVVKAITDSFGKEIWKKS-LVVLTHAQLSPP 169 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHCCCCC
T ss_conf 12210012332354546889-999999876427788778-887653105888
No 359
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.14 E-value=0.00065 Score=43.56 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.5
Q ss_pred EEEECCCCCCCEEEEEECC
Q ss_conf 2442167775303541014
Q gi|254780648|r 163 GIIGLPNAGKSTFLASVTR 181 (335)
Q Consensus 163 glVG~PNaGKSTLln~ls~ 181 (335)
=|=||--|||+||||.+-+
T Consensus 8 iltGFLGaGKTTlL~~lL~ 26 (317)
T PRK11537 8 LLTGFLGAGKTTLLRHILN 26 (317)
T ss_pred EEEECCCCCHHHHHHHHHH
T ss_conf 9830888899999999972
No 360
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.11 E-value=0.0011 Score=42.06 Aligned_cols=159 Identities=21% Similarity=0.272 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCC----HHHHHHHCCCEECCE---
Q ss_conf 4332676676761013677530268999997630112442167775303541014540----121211000000102---
Q gi|254780648|r 127 NAHFKSSTNQAPYYANPGILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKP----KIADYPFTTLYPNLG--- 199 (335)
Q Consensus 127 N~~f~s~~n~~P~~~~~G~~G~~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~----kIa~ypFTT~~P~lG--- 199 (335)
...|.+..+|.++.... .|-.+. |=++|--+.|||||+|.|.+... .+-+..-.++.|.+-
T Consensus 3 ~vgi~~l~~~r~~~~~k--~Gi~f~----------im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~ 70 (373)
T COG5019 3 YVGISNLPNQRHRKLSK--KGIDFT----------IMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKI 70 (373)
T ss_pred CCCCCCCHHHHHHHHHH--CCCCEE----------EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 67747542788899985--599638----------999627887555788765676525777755766666776258886
Q ss_pred ---EEEECC--EEEEEECCCCCCCCCCCCCCC-------HH---HHHH---HHHHH--------HHHHHHCCCCCCCHHH
Q ss_conf ---663298--689982264212473116775-------12---3443---33335--------7887520222211013
Q gi|254780648|r 200 ---IVKEGY--KEFILADIPGIIKNAHQGAGI-------GD---RFLK---HTERT--------HVLLHIVSALEENVQA 253 (335)
Q Consensus 200 ---vv~~~~--~~~~i~D~PGlIegA~~~~gl-------G~---~FLr---hIer~--------~vLl~VVD~s~~d~~~ 253 (335)
.+..++ -+++++||||+-+.-.--.-| -. ++|+ .+.|. .+.||.|-.+.....+
T Consensus 71 ~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~ 150 (373)
T COG5019 71 TKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKP 150 (373)
T ss_pred EEEEEECCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCH
T ss_conf 43166048748988886158865654641017999999999999999986434556654468248999984689887878
Q ss_pred -HHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCHHHHHHHHHHHHH---HCCCCEE
Q ss_conf -4666789987776675059-88999974658998899999999998---6299489
Q gi|254780648|r 254 -AYQCILDELSAYNSELRKK-IEIVGLSQIDTVDSDTLARKKNELAT---QCGQVPF 305 (335)
Q Consensus 254 -~~~~I~~EL~~y~~~L~~K-p~IIVlNKiDl~~~e~~~~~~~~l~~---~~~~~vi 305 (335)
|++. +.+| .++ ..|=|+-|+|.+..+++....+.+.+ ..+.++|
T Consensus 151 ~DIe~-Mk~l-------s~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf 199 (373)
T COG5019 151 LDIEA-MKRL-------SKRVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVF 199 (373)
T ss_pred HHHHH-HHHH-------HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 88999-9998-------5336756566246658999999999999999998187622
No 361
>KOG0465 consensus
Probab=97.11 E-value=0.00078 Score=43.07 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=57.9
Q ss_pred EEEECEEEEECCCCCCCEEEEEECC----------CCCHHHHHHHCCCEECCEE--------EEECCEEEEEECCCCCCC
Q ss_conf 7630112442167775303541014----------5401212110000001026--------632986899822642124
Q gi|254780648|r 157 KLIADIGIIGLPNAGKSTFLASVTR----------AKPKIADYPFTTLYPNLGI--------VKEGYKEFILADIPGIIK 218 (335)
Q Consensus 157 k~iaDVglVG~PNaGKSTLln~ls~----------ak~kIa~ypFTT~~P~lGv--------v~~~~~~~~i~D~PGlIe 218 (335)
+-+-.||++-.=-|||+|+-.++-- .+.+.+-+-|-.+...-|+ +...+..+.++||||-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv- 115 (721)
T KOG0465 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV- 115 (721)
T ss_pred HHHCCCCEEEEEECCCCEEEHEEEEECCEEEECCCCCCCCEEEEHHHHHHHCCCEEEECEEEEEECCCEEEEECCCCCE-
T ss_conf 4510031699982698511020013022010023202676046427778653844641215664045206785489721-
Q ss_pred CCCCCCCCHHHHHHHHHHHH----HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 73116775123443333357----88752022221101346667899877766750598899997465899
Q gi|254780648|r 219 NAHQGAGIGDRFLKHTERTH----VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVD 285 (335)
Q Consensus 219 gA~~~~glG~~FLrhIer~~----vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~ 285 (335)
+|--.+||+= --+.|+|+... ...+...+...+.+| ..|++.-+||+|.+.
T Consensus 116 ----------DFT~EVeRALrVlDGaVlvl~aV~G-VqsQt~tV~rQ~~ry-----~vP~i~FiNKmDRmG 170 (721)
T KOG0465 116 ----------DFTFEVERALRVLDGAVLVLDAVAG-VESQTETVWRQMKRY-----NVPRICFINKMDRMG 170 (721)
T ss_pred ----------EEEEEEHHHHHHCCCEEEEEECCCC-EEHHHHHHHHHHHHC-----CCCEEEEEEHHHHCC
T ss_conf ----------5797720025205672899970365-111356898888761-----897599986166447
No 362
>PRK09866 hypothetical protein; Provisional
Probab=97.09 E-value=0.00014 Score=47.59 Aligned_cols=99 Identities=20% Similarity=0.246 Sum_probs=57.6
Q ss_pred EEEEECCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 89982264212473116775123443-33335788752022221101346667899877766750598899997465899
Q gi|254780648|r 207 EFILADIPGIIKNAHQGAGIGDRFLK-HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVD 285 (335)
Q Consensus 207 ~~~i~D~PGlIegA~~~~glG~~FLr-hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~ 285 (335)
++++.||||==| |-+. -| ...|+ .+.|+.+++-|+|-+.-+...| +.+++||....... |..+.+||-|..|
T Consensus 231 ~L~llDTPGPNE-AGq~-~l-~~m~~eQL~raSaVLaVmDyTQl~s~ad-~evr~~l~ai~~~~---~l~~lvnkfdq~d 303 (742)
T PRK09866 231 QLTLLDTPGPNE-AGQP-HL-QKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSV---PLYVLVNKFDQQD 303 (742)
T ss_pred CEEEECCCCCCC-CCCH-HH-HHHHHHHHHHHCCHHEEECHHHHCCCCH-HHHHHHHHHHHHHH---HHHHHHHHHHHCC
T ss_conf 158735999973-3557-79-9999999986142110211675442006-99999999986100---5999986540003
Q ss_pred H-----HHHHHHHHH-HHHH--CCCCEEEEECCCC
Q ss_conf 8-----899999999-9986--2994899988878
Q gi|254780648|r 286 S-----DTLARKKNE-LATQ--CGQVPFEFSSITG 312 (335)
Q Consensus 286 ~-----e~~~~~~~~-l~~~--~~~~vi~ISA~tg 312 (335)
. +.....+.. +.+. .+..|||+|+.-+
T Consensus 304 rn~d~~~~vr~~v~~~l~~g~i~~~~v~p~ss~~~ 338 (742)
T PRK09866 304 RNSDDADQVRALISGTLMKGCITPQQIFPVSSMWG 338 (742)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHH
T ss_conf 47871999998733555238987532354337899
No 363
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.06 E-value=0.0021 Score=40.42 Aligned_cols=130 Identities=13% Similarity=0.149 Sum_probs=77.9
Q ss_pred CEECCEEEE----ECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH--HHH--HHHHHHHHHHH
Q ss_conf 000102663----2986899822642124731167751234433333578875202222110--134--66678998777
Q gi|254780648|r 194 LYPNLGIVK----EGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALEENV--QAA--YQCILDELSAY 265 (335)
Q Consensus 194 ~~P~lGvv~----~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d~--~~~--~~~I~~EL~~y 265 (335)
+.++.|+.+ .+...+.++|+.|= -+|-+.|=+- -+....++||+..++=|- .++ ...+.+-|..|
T Consensus 145 R~~TtGI~e~~F~~~~~~~~~~DVGGQ---rseRkKWi~~----Fe~V~aiiFvvsLs~yDq~l~Ed~~~Nrl~eSl~LF 217 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQ---RSERKKWIHC----FEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLF 217 (317)
T ss_pred HCCCCCCEEEEEEECCEEEEEECCCCC---CCCCCCHHHH----HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 356788316999977767998516888---4434346888----467766998852353233555664517899999999
Q ss_pred H-----HHHCCCCEEEEEECCCCCCHHH------------------HHHH----HHHHHHHC---CCC--EEEEECCCCC
Q ss_conf 6-----6750598899997465899889------------------9999----99999862---994--8999888788
Q gi|254780648|r 266 N-----SELRKKIEIVGLSQIDTVDSDT------------------LARK----KNELATQC---GQV--PFEFSSITGH 313 (335)
Q Consensus 266 ~-----~~L~~Kp~IIVlNKiDl~~~e~------------------~~~~----~~~l~~~~---~~~--vi~ISA~tg~ 313 (335)
+ +-+.+.|.++.+||.|+..+.- .... ...+.+.. +.+ ++.++|..-+
T Consensus 218 ~~i~n~~~f~~~~iiLflNK~Dlf~eKi~~~~l~~~Fpdy~g~~~~~~~a~~fi~~kF~~~~~~~~r~~y~h~T~A~Dt~ 297 (317)
T cd00066 218 DSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTE 297 (317)
T ss_pred HHHHCCHHHCCCCEEEEEECHHHHHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECHH
T ss_conf 99974874557988999857699998647995442288999999999999999999999853689985778756110528
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998545
Q gi|254780648|r 314 GIPQILECLHDKIFSIR 330 (335)
Q Consensus 314 GI~eL~~~I~e~L~~~r 330 (335)
+++.+.+.+.+.+....
T Consensus 298 ~i~~vf~~v~d~I~~~~ 314 (317)
T cd00066 298 NIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999987
No 364
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.04 E-value=0.00045 Score=44.52 Aligned_cols=143 Identities=20% Similarity=0.235 Sum_probs=69.4
Q ss_pred EEEEECCCCCCCEEEEEECC------CCC--------HH------------HHHHHCCCE----EC------CEEEEECC
Q ss_conf 12442167775303541014------540--------12------------121100000----01------02663298
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTR------AKP--------KI------------ADYPFTTLY----PN------LGIVKEGY 205 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~------ak~--------kI------------a~ypFTT~~----P~------lGvv~~~~ 205 (335)
|+|||.+-|||+|-+.+|.. .++ ++ -+-||.+.. |. +......+
T Consensus 4 i~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~~~ 83 (196)
T pfam00448 4 ILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKAEN 83 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99989999988999999999999779928999758776889999999998639817814877787899999999988468
Q ss_pred EEEEEECCCCCCCCCCCCCCCH---HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 6899822642124731167751---2344333335788752022221101346667899877766750598899997465
Q gi|254780648|r 206 KEFILADIPGIIKNAHQGAGIG---DRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQID 282 (335)
Q Consensus 206 ~~~~i~D~PGlIegA~~~~glG---~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiD 282 (335)
.+++++||||.-. .+..+- .+++..+.. .-.+.|+|++.. .++.+.+ ..|... -.+.=++++|.|
T Consensus 84 ~D~IlIDTaGr~~---~d~~~~~el~~~~~~~~~-~~~~LVl~a~~~--~~~~~~~----~~f~~~--~~~~~~I~TKlD 151 (196)
T pfam00448 84 YDVVLVDTAGRLQ---NDKNLMDELKKIKRVIAP-DEVLLVLDATTG--QNALNQA----KAFNEA--VGITGVILTKLD 151 (196)
T ss_pred CCEEEEECCCCCC---CCHHHHHHHHHHHHHCCC-CCEEEEEECCCC--CCHHHHH----HHHHHH--CCCCCEEEEEEC
T ss_conf 9999998999874---767789999999852287-302899856778--2137899----987600--477626888405
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 899889999999999862994899988878899999999
Q gi|254780648|r 283 TVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILEC 321 (335)
Q Consensus 283 l~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~ 321 (335)
-.. ..-..+. +....+.|+.+++ +|+++++|...
T Consensus 152 et~--~~G~~l~-~~~~~~~Pi~~~t--~Gq~v~Dl~~~ 185 (196)
T pfam00448 152 GDA--KGGAALS-IAAETGKPIKFIG--VGEKIDDLEPF 185 (196)
T ss_pred CCC--CCCHHHH-HHHHHCCCEEEEE--CCCCHHHCCCC
T ss_conf 788--7529998-9999896979996--79981206347
No 365
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); InterPro: IPR005291 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are integral membrane proteins and they are involved in the transport of chloride ions. Many of these proteins are the cystis fibrosis transmembrane conductor regulators (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.; GO: 0005254 chloride channel activity, 0006811 ion transport, 0016020 membrane.
Probab=97.02 E-value=0.0062 Score=37.62 Aligned_cols=186 Identities=18% Similarity=0.272 Sum_probs=98.7
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCE--EEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6654221335444611998283323--57325882664561268455522677776344332676676761013677530
Q gi|254780648|r 71 EKGMKRNRSGAKGEDVVLTVPVGTQ--VFEEDGISLICDLDQEGQRIILAPGGNGGFGNAHFKSSTNQAPYYANPGILGQ 148 (335)
Q Consensus 71 ~~G~~~~~~G~~g~d~~i~vP~GT~--v~~~~~~~~~~dl~~~~~~~~~~~GG~GG~GN~~f~s~~n~~P~~~~~G~~G~ 148 (335)
.++.+.+++|..+++++|+=|-=+- ++-..+...+.+| ..--..+|+.=+-|-+|--+ +||
T Consensus 1225 ~~~~~~~k~g~~s~~lvI~N~H~~~dd~WP~~G~M~V~~L-----T~KYT~~G~avL~dlSFsv~------------~GQ 1287 (1534)
T TIGR01271 1225 SKSGKKYKNGQLSKVLVIENKHVKKDDIWPSGGQMDVKDL-----TAKYTEAGRAVLQDLSFSVE------------AGQ 1287 (1534)
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCC-----EEEECCCCHHHHHHCCEEEC------------CCC
T ss_conf 7776654467777457760776764677999885675254-----02321020555641341443------------883
Q ss_pred EEEEEEEEEEEECEEEEECCCCCCCEEEEEEC---CCCCHHH----HHHHCCCEE---CCEEE-----------EE----
Q ss_conf 26899999763011244216777530354101---4540121----211000000---10266-----------32----
Q gi|254780648|r 149 EKIIWLKLKLIADIGIIGLPNAGKSTFLASVT---RAKPKIA----DYPFTTLYP---NLGIV-----------KE---- 203 (335)
Q Consensus 149 ~~~~~lelk~iaDVglVG~PNaGKSTLln~ls---~ak~kIa----~ypFTT~~P---~lGvv-----------~~---- 203 (335)
+ ||++|+.-+||||||+|+- +..-+|. +|.=-|+.. -.||| +.
T Consensus 1288 ~------------VGlLGRTGsGKSTLLSAlLRL~~T~GEI~IDGvSW~SvtLQ~WRKAFGViPQKvFi~sGTFR~NLDP 1355 (1534)
T TIGR01271 1288 R------------VGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQKWRKAFGVIPQKVFIFSGTFRKNLDP 1355 (1534)
T ss_pred E------------EEEEECCCCCHHHHHHHHHHHCCCCCCEEECCEEECCCCHHHHHHHCCCCCCEEEEECCCCCCCCCH
T ss_conf 5------------7753026876789999999960779816762335052122003444131563478831551136881
Q ss_pred --------------------------CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH---HHHHHHCCC--CCCCHH
Q ss_conf --------------------------9868998226421247311677512344333335---788752022--221101
Q gi|254780648|r 204 --------------------------GYKEFILADIPGIIKNAHQGAGIGDRFLKHTERT---HVLLHIVSA--LEENVQ 252 (335)
Q Consensus 204 --------------------------~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~---~vLl~VVD~--s~~d~~ 252 (335)
+.-.|++.|=--+. | -||+=|==+.|+ ++=+.++|- +.-||+
T Consensus 1356 y~~~SD~E~WkVaeEVGLkSvIEQFPdKLdF~L~DGGyvL---S----~GHKQLMCLARSiLSKAkILLLDEPsA~LDPv 1428 (1534)
T TIGR01271 1356 YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVL---S----NGHKQLMCLARSILSKAKILLLDEPSAHLDPV 1428 (1534)
T ss_pred HHHCCHHHHHHHHHHCCCEEEEECCCCCCCEEEECCCEEE---E----CCHHHHHHHHHHHHHHHHHHHCCCCCHHCCHH
T ss_conf 3422603566665431543110008884124886286783---1----64168999998888653322214871010316
Q ss_pred HHHHHHHHHHHHHH------------HHHCCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 34666789987776------------675059889999746589988999999
Q gi|254780648|r 253 AAYQCILDELSAYN------------SELRKKIEIVGLSQIDTVDSDTLARKK 293 (335)
Q Consensus 253 ~~~~~I~~EL~~y~------------~~L~~Kp~IIVlNKiDl~~~e~~~~~~ 293 (335)
.|++||+.|+.-- +.|++-...+|+--+.+-.-+.+.+.+
T Consensus 1429 -T~Qi~RkTLK~~Fs~CTVILsEHRvEalLECQ~FL~IE~~~~k~yDsiQKLL 1480 (1534)
T TIGR01271 1429 -TLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLL 1480 (1534)
T ss_pred -HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEECCCCHHHHHHHHHH
T ss_conf -8999999985322157487511222246640310144256430357788886
No 366
>KOG0447 consensus
Probab=97.00 E-value=0.0012 Score=42.03 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=41.0
Q ss_pred EEEEEECCCCCCCC-----CCCCCCCHHHHHH-HHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 68998226421247-----3116775123443-33335788752-02222110134666789987776675059889999
Q gi|254780648|r 206 KEFILADIPGIIKN-----AHQGAGIGDRFLK-HTERTHVLLHI-VSALEENVQAAYQCILDELSAYNSELRKKIEIVGL 278 (335)
Q Consensus 206 ~~~~i~D~PGlIeg-----A~~~~glG~~FLr-hIer~~vLl~V-VD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVl 278 (335)
.+++++|+||+|.. |++-+--=++.-+ |.+...+|+.. -|.|-+--. ..+-+-+.+.+| ..|..|.|+
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAER---SnVTDLVsq~DP--~GrRTIfVL 486 (980)
T KOG0447 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAER---SIVTDLVSQMDP--HGRRTIFVL 486 (980)
T ss_pred CEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH---HHHHHHHHHCCC--CCCEEEEEE
T ss_conf 236886377325440023464316779999999745998389995168730555---138889871387--787369998
Q ss_pred ECCCCCCH
Q ss_conf 74658998
Q gi|254780648|r 279 SQIDTVDS 286 (335)
Q Consensus 279 NKiDl~~~ 286 (335)
+|+|+.++
T Consensus 487 TKVDlAEk 494 (980)
T KOG0447 487 TKVDLAEK 494 (980)
T ss_pred EECCHHHH
T ss_conf 51115644
No 367
>KOG1547 consensus
Probab=96.97 E-value=0.0012 Score=41.88 Aligned_cols=138 Identities=17% Similarity=0.262 Sum_probs=70.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCC------HH-H-HHHHCCCEECCE-EEEECCE--EEEEECCCCC---CCC--CCCCCC
Q ss_conf 12442167775303541014540------12-1-211000000102-6632986--8998226421---247--311677
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKP------KI-A-DYPFTTLYPNLG-IVKEGYK--EFILADIPGI---IKN--AHQGAG 225 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~------kI-a-~ypFTT~~P~lG-vv~~~~~--~~~i~D~PGl---Ieg--A~~~~g 225 (335)
|-.||..-.|||||+|.+..++. -. | .||-||-.-.++ ++..+.. +++++||||+ |.+ +.+-.-
T Consensus 49 IMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~ 128 (336)
T KOG1547 49 IMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIE 128 (336)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 99980687771156788888887612589765675564278875344533066589988834898533337532067799
Q ss_pred -----CHHHHHH---------HHHHHH--HHHHHCCCCCCCHH-HHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCHH
Q ss_conf -----5123443---------333357--88752022221101-34666789987776675059-889999746589988
Q gi|254780648|r 226 -----IGDRFLK---------HTERTH--VLLHIVSALEENVQ-AAYQCILDELSAYNSELRKK-IEIVGLSQIDTVDSD 287 (335)
Q Consensus 226 -----lG~~FLr---------hIer~~--vLl~VVD~s~~d~~-~~~~~I~~EL~~y~~~L~~K-p~IIVlNKiDl~~~e 287 (335)
--.+||| +|..++ ..+|.|..+..... -|++.+.. |.+- ..+-|+-|+|.+.-+
T Consensus 129 kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkr--------Lt~vvNvvPVIakaDtlTle 200 (336)
T KOG1547 129 KYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKR--------LTEVVNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHH--------HHHHHEEEEEEEECCCCCHH
T ss_conf 9999999999999986776513887547899999679887567044999998--------86552043357506644277
Q ss_pred HHHHHHHHHHHHC---CCCEEEE
Q ss_conf 9999999999862---9948999
Q gi|254780648|r 288 TLARKKNELATQC---GQVPFEF 307 (335)
Q Consensus 288 ~~~~~~~~l~~~~---~~~vi~I 307 (335)
+..+..+.+.+.+ +..++|-
T Consensus 201 Er~~FkqrI~~el~~~~i~vYPq 223 (336)
T KOG1547 201 ERSAFKQRIRKELEKHGIDVYPQ 223 (336)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 79999999999999659400355
No 368
>pfam00503 G-alpha G-protein alpha subunit. G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase.
Probab=96.97 E-value=0.003 Score=39.48 Aligned_cols=130 Identities=14% Similarity=0.145 Sum_probs=78.1
Q ss_pred CEECCEEEE----ECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC--HHHH--HHHHHHHHHHH
Q ss_conf 000102663----298689982264212473116775123443333357887520222211--0134--66678998777
Q gi|254780648|r 194 LYPNLGIVK----EGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALEEN--VQAA--YQCILDELSAY 265 (335)
Q Consensus 194 ~~P~lGvv~----~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d--~~~~--~~~I~~EL~~y 265 (335)
+.|..|+.+ .+...|.+.|+.|= -++-+-|=+ +-+..++++||++.++=| ..++ ...+.+-|..|
T Consensus 174 R~~TtGI~e~~F~~~~~~~~l~DVGGq---r~eRrKWi~----~Fe~V~aIiFvvsLS~yDq~l~ED~~~NRl~eSl~LF 246 (350)
T pfam00503 174 RVKTTGIVETTFSVKKVTFRMFDVGGQ---RSERKKWIH----CFEDVTAIIFLVALSEYDQVLFEDESTNRMQESLKLF 246 (350)
T ss_pred CCCCCCCEEEEEEECCEEEEEECCCCC---CCCCCCHHH----HHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 165578426898747867997248888---333555566----6167646999843530132433586440899999999
Q ss_pred -----HHHHCCCCEEEEEECCCCCCHH------------------HHHHHHH----HHHHHC----CCCE--EEEECCCC
Q ss_conf -----6675059889999746589988------------------9999999----999862----9948--99988878
Q gi|254780648|r 266 -----NSELRKKIEIVGLSQIDTVDSD------------------TLARKKN----ELATQC----GQVP--FEFSSITG 312 (335)
Q Consensus 266 -----~~~L~~Kp~IIVlNKiDl~~~e------------------~~~~~~~----~l~~~~----~~~v--i~ISA~tg 312 (335)
++-+.+.|.++++||+|+..+. ......+ .+.... ..++ ..++|..-
T Consensus 247 ~~i~n~~~f~~t~iiLfLNK~Dlf~eKl~~~~l~~~Fpdy~g~~~~~~~~~~fi~~kF~~~~~~~~~r~iy~h~T~AtDt 326 (350)
T pfam00503 247 DSICNNRWFKNTSIILFLNKKDLFEEKIKKSPISDYFPEYKGPPQDYEAAKEFIKKKFVSLNRNNPKKEIYSHFTCATDT 326 (350)
T ss_pred HHHHCCHHHCCCCEEEEEECHHHHHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
T ss_conf 99964852457987999767788998648994341089999998899999999999999756798898266521532050
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 899999999999998545
Q gi|254780648|r 313 HGIPQILECLHDKIFSIR 330 (335)
Q Consensus 313 ~GI~eL~~~I~e~L~~~r 330 (335)
+++..+.+.+.+.+....
T Consensus 327 ~~i~~vf~~v~d~Il~~~ 344 (350)
T pfam00503 327 ENIRFVFDAVKDIILQEN 344 (350)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 889999999999999999
No 369
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.95 E-value=0.0045 Score=38.46 Aligned_cols=52 Identities=33% Similarity=0.330 Sum_probs=37.0
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECC
Q ss_conf 899999763011244216777530354101454012121100000010266329868998226
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADI 213 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~ 213 (335)
.+.+++.-=.-|||||.+-||||||++-|++. ..|.-|.+....+-.-+.++
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi-----------~~Pt~G~v~v~G~v~~li~l 96 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGI-----------YKPTSGKVKVTGKVAPLIEL 96 (249)
T ss_pred CCEEEEECCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCCEEEECCEEEHHHHC
T ss_conf 73588607989989878998589999999587-----------17988259981467056441
No 370
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.93 E-value=0.00022 Score=46.37 Aligned_cols=20 Identities=50% Similarity=0.898 Sum_probs=17.7
Q ss_pred EEEEECCCCCCCEEEEEECC
Q ss_conf 12442167775303541014
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTR 181 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ 181 (335)
||+-|.|-||||||++++..
T Consensus 2 iGitG~pGaGKStLi~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEECCCCCCCHHHHHHHHHH
T ss_conf 76258997878999999999
No 371
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.93 E-value=0.0018 Score=40.88 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=41.2
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCCHH
Q ss_conf 78875202222110134666789987776675059889999746589988999999999986299-48999888788999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQ-VPFEFSSITGHGIP 316 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~-~vi~ISA~tg~GI~ 316 (335)
+.++-|||+..- .+.+..+.+ +.......++ +|++||+|+++++.+......+.+..+. +++..|. ......
T Consensus 118 d~vvtvVDa~~~--~~~~~~~~~-~~~~Qia~AD---~ivlNK~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~ 190 (323)
T COG0523 118 DGVVTVVDAAHF--LEGLDAIAE-LAEDQLAFAD---VIVLNKTDLVDAEELEALEARLRKLNPRARIIETSY-GDVDLA 190 (323)
T ss_pred CCEEEEEEHHHH--HHHHHHHHH-HHHHHHHHCC---EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCC-CCCCHH
T ss_conf 336999847886--545677999-9999998679---999836456898899999999997599986998123-668778
Q ss_pred HHH
Q ss_conf 999
Q gi|254780648|r 317 QIL 319 (335)
Q Consensus 317 eL~ 319 (335)
+++
T Consensus 191 ~ll 193 (323)
T COG0523 191 ELL 193 (323)
T ss_pred HHH
T ss_conf 863
No 372
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.0034 Score=39.21 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=26.3
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 011244216777530354101454012121100000010266329868
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
.=+||+|.--||||||++.+++- +.|.-|.+..++..
T Consensus 27 ei~gllGpNGAGKSTll~~i~Gl-----------~~p~~G~i~i~G~~ 63 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL-----------LKPTSGRATVAGHD 63 (220)
T ss_pred CEEEEECCCCCHHHHHHHHHHCC-----------CCCCCCEEEECCEE
T ss_conf 39999999987199999999769-----------78896289999999
No 373
>KOG3905 consensus
Probab=96.85 E-value=0.019 Score=34.62 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=41.7
Q ss_pred CCEEEEEECCCCCCH-----H----H---HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 988999974658998-----8----9---9999999998629948999888788999999999999985
Q gi|254780648|r 272 KIEIVGLSQIDTVDS-----D----T---LARKKNELATQCGQVPFEFSSITGHGIPQILECLHDKIFS 328 (335)
Q Consensus 272 Kp~IIVlNKiDl~~~-----e----~---~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e~L~~ 328 (335)
-|.+||++|+|.+.- + . +...++.|.-..+...|+.|++...|++-|.+.|...++-
T Consensus 223 i~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905 223 IPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CCEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 747999953423667653010058889999999999998708436885213354357999998887427
No 374
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.0068 Score=37.38 Aligned_cols=151 Identities=17% Similarity=0.132 Sum_probs=69.7
Q ss_pred EEECCCCCCCEEEEEECCCCCHHH--HHHHCCCEECCEEEE-ECCEEEEEECCCCC-CCCC---CCCCCCHHHHHHHHHH
Q ss_conf 442167775303541014540121--211000000102663-29868998226421-2473---1167751234433333
Q gi|254780648|r 164 IIGLPNAGKSTFLASVTRAKPKIA--DYPFTTLYPNLGIVK-EGYKEFILADIPGI-IKNA---HQGAGIGDRFLKHTER 236 (335)
Q Consensus 164 lVG~PNaGKSTLln~ls~ak~kIa--~ypFTT~~P~lGvv~-~~~~~~~i~D~PGl-IegA---~~~~glG~~FLrhIer 236 (335)
+||.|++||+|++....-.-|=.. .-..+. .|.-..++ .-..+-+++||.|= +.-. ..++..-..||.-+.+
T Consensus 130 viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~-~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk 208 (1188)
T COG3523 130 VIGPPGSGKTTALLNSGLQFPLAEQMGALGLA-GPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKK 208 (1188)
T ss_pred EECCCCCCCCHHHHCCCCCCCCHHHHCCCCCC-CCCCCCCCCCCCCCEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 85488898400875155366615553312226-88873357542553489858752443667502348889998889997
Q ss_pred H------HHHHHHCC---CCCCCHHHH---HHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCH-HHHHHHH-HHHHHHCC
Q ss_conf 5------78875202---222110134---666789987776675-05988999974658998-8999999-99998629
Q gi|254780648|r 237 T------HVLLHIVS---ALEENVQAA---YQCILDELSAYNSEL-RKKIEIVGLSQIDTVDS-DTLARKK-NELATQCG 301 (335)
Q Consensus 237 ~------~vLl~VVD---~s~~d~~~~---~~~I~~EL~~y~~~L-~~Kp~IIVlNKiDl~~~-e~~~~~~-~~l~~~~~ 301 (335)
- +-++.-+| ....++.+. ...|+.-|++....| ..-|..+++||+|++.- ++...-. ++..+..-
T Consensus 209 ~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~~~r~qvw 288 (1188)
T COG3523 209 YRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNKEEREQVW 288 (1188)
T ss_pred HCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCHHHHHHHC
T ss_conf 35578886379997899973899999999999999999999984156776389986210021579987333798874001
Q ss_pred CCEEEEECCCCCCH
Q ss_conf 94899988878899
Q gi|254780648|r 302 QVPFEFSSITGHGI 315 (335)
Q Consensus 302 ~~vi~ISA~tg~GI 315 (335)
--.|+..+....+.
T Consensus 289 G~tf~~~~~~~~~~ 302 (1188)
T COG3523 289 GVTFPLDARRNANL 302 (1188)
T ss_pred EECCCCCCCCCCCH
T ss_conf 00125666666455
No 375
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.80 E-value=0.01 Score=36.31 Aligned_cols=151 Identities=18% Similarity=0.153 Sum_probs=70.0
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE------------EEEECCCCCCC
Q ss_conf 899999763011244216777530354101454012121100000010266329868------------99822642124
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE------------FILADIPGIIK 218 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~------------~~i~D~PGlIe 218 (335)
.+.|+++-=.=+||+|..-|||||||+.|++- +.|.-|.+...+.. -.+.+.|.+.+
T Consensus 23 ~vs~~i~~Gei~gllG~NGAGKTTllk~l~Gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~ 91 (293)
T COG1131 23 GVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL-----------LKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYP 91 (293)
T ss_pred EEEEEEECCEEEEEECCCCCCHHHHHHHHHCC-----------CCCCCEEEEECCCCCCCCHHHHHCEEEEEECCCCCCC
T ss_conf 04999828959999899999899999999679-----------7788649999586275126765052999947877771
Q ss_pred CCCCCCCCHHHHHHHH------------HHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCEEEEE----EC
Q ss_conf 7311677512344333------------33578875202222--110134666789987776675059889999----74
Q gi|254780648|r 219 NAHQGAGIGDRFLKHT------------ERTHVLLHIVSALE--ENVQAAYQCILDELSAYNSELRKKIEIVGL----SQ 280 (335)
Q Consensus 219 gA~~~~glG~~FLrhI------------er~~vLl~VVD~s~--~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVl----NK 280 (335)
... +.++|+-. ++++-++-.+.... ..+...|-.=.+.--.....|..+|.++++ |=
T Consensus 92 ~lT-----v~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~G 166 (293)
T COG1131 92 ELT-----VRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSG 166 (293)
T ss_pred CCC-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 475-----999999999984997166799999999986996032881023798899999999999669999999699778
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 65899889999999999862994899988878899999
Q gi|254780648|r 281 IDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 281 iDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
.|-.....+.+.++.+.+..+ ..+.+|++.-+-++.+
T Consensus 167 LDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~ 203 (293)
T COG1131 167 LDPESRREIWELLRELAKEGG-VTILLSTHILEEAEEL 203 (293)
T ss_pred CCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHH
T ss_conf 799999999999999996799-5999983886999986
No 376
>KOG0460 consensus
Probab=96.79 E-value=0.004 Score=38.79 Aligned_cols=138 Identities=25% Similarity=0.321 Sum_probs=74.4
Q ss_pred EEEEECEEEEECCCCCCCEEEEEECCCCCHH--H---HHH-----------HCCCEECCEEEEE--CCEEEEEECCCC--
Q ss_conf 9763011244216777530354101454012--1---211-----------0000001026632--986899822642--
Q gi|254780648|r 156 LKLIADIGIIGLPNAGKSTFLASVTRAKPKI--A---DYP-----------FTTLYPNLGIVKE--GYKEFILADIPG-- 215 (335)
Q Consensus 156 lk~iaDVglVG~PNaGKSTLln~ls~ak~kI--a---~yp-----------FTT~~P~lGvv~~--~~~~~~i~D~PG-- 215 (335)
-|--..||-||--.-||+||-.|||....+. | .|. .-|+ |...|.+ ..+.+--+|-||
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITI--n~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITI--NAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHCCCEE--EEEEEEEECCCCCCCCCCCCCHH
T ss_conf 7986520330033577200899999999751650105476653382665356167--64356642244300147899638
Q ss_pred -----CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
Q ss_conf -----124731167751234433333578875202222110134666789987776675059889999746589988999
Q gi|254780648|r 216 -----IIKNAHQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLA 290 (335)
Q Consensus 216 -----lIegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~ 290 (335)
.|-||++.-| -+.||.+++- ++.+- ++.|- ......-+..++.+||.|+++.++..
T Consensus 129 DYIKNMItGaaqMDG--------------aILVVaatDG-~MPQT---rEHlL-LArQVGV~~ivvfiNKvD~V~d~e~l 189 (449)
T KOG0460 129 DYIKNMITGAAQMDG--------------AILVVAATDG-PMPQT---REHLL-LARQVGVKHIVVFINKVDLVDDPEML 189 (449)
T ss_pred HHHHHHHCCCCCCCC--------------EEEEEECCCC-CCCCH---HHHHH-HHHHCCCCEEEEEEECCCCCCCHHHH
T ss_conf 899875327323673--------------4999974789-88406---88888-89872876499997120246888999
Q ss_pred HH----HHHHHHHCC-----CCEEEEEC---CCCCC
Q ss_conf 99----999998629-----94899988---87889
Q gi|254780648|r 291 RK----KNELATQCG-----QVPFEFSS---ITGHG 314 (335)
Q Consensus 291 ~~----~~~l~~~~~-----~~vi~ISA---~tg~G 314 (335)
++ .+++...++ .|++.=|| +.+..
T Consensus 190 eLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~ 225 (449)
T KOG0460 190 ELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQ 225 (449)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHCCCC
T ss_conf 999999999999729998878766320122222788
No 377
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0019 Score=40.71 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=22.5
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
+.|++.-=-=++|+|..-+|||||||.|++-
T Consensus 17 i~l~i~~Ge~~~ilGpSGsGKSTLl~li~Gl 47 (211)
T cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 7889889989999999995599999999769
No 378
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=96.78 E-value=0.00056 Score=43.92 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=55.3
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 78875202222110134666789987776675059889999746589988999999999986299489998887889999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
|-++.|+.+.++++ +...|..-|-. .+...-|.+||+||+||+++++.......+ +..+.+++.+|+.+++|+++
T Consensus 90 Dq~liV~s~~~P~~--~~~~LDRfLv~--ae~~~i~~vivlnK~DL~~~~e~~~~~~~~-~~~GY~~i~iS~~~~~gl~~ 164 (351)
T PRK12289 90 DQILLVFALAEPPL--DPWQLSRFLVK--AESTGLEIQLCLNKADLVSPTQQQQWQDRL-AQWGYQPLFISVEQGIGLEA 164 (351)
T ss_pred CEEEEEEECCCCCC--CHHHHHHHHHH--HHHCCCCEEEEEEHHHCCCHHHHHHHHHHH-HHCCCCEEEEECCCCCCHHH
T ss_conf 35999996578998--87799999999--998799789998657749989999999999-97798289996789968999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780648|r 318 ILECLHDK 325 (335)
Q Consensus 318 L~~~I~e~ 325 (335)
|.+.|...
T Consensus 165 L~~~L~~k 172 (351)
T PRK12289 165 LLKQLRNK 172 (351)
T ss_pred HHHHHCCC
T ss_conf 99987598
No 379
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0036 Score=39.02 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=23.4
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
+.|++.-=.=++|+|.--|||||||+.+++-
T Consensus 20 vsl~i~~Ge~~~lvGpnGaGKSTLl~~i~Gl 50 (255)
T PRK11248 20 INLTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 1779869989999999984699999999759
No 380
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.014 Score=35.50 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=26.9
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 11244216777530354101454012121100000010266329868
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
=+||+|.--||||||++.|++- +.|.-|.|..++..
T Consensus 27 i~gllGpNGAGKSTll~~i~Gl-----------~~p~sG~i~i~g~~ 62 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL-----------TPPSSGTIRIDGQD 62 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEE
T ss_conf 5999999982399999999759-----------66896299999999
No 381
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.72 E-value=0.01 Score=36.33 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=64.7
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEE------------------EEC
Q ss_conf 89999976301124421677753035410145401212110000001026632986899------------------822
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFI------------------LAD 212 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~------------------i~D 212 (335)
.+.|++.-=.=+||+|..-||||||++.|+.- ..|.-|.+..+++.+. +=|
T Consensus 16 dv~l~i~~g~i~~l~GpsGaGKTTLl~~iaGl-----------~~p~~G~I~~~g~~~~~~~~~~~l~~~~r~ig~vfQ~ 84 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINLISGL-----------TRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQD 84 (352)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEECCCCCCCCCCCHHHCCEEEEECC
T ss_conf 99999889989999999996299999999768-----------9999659999999985554101376766886899357
Q ss_pred CCCCCCC--CCCCCCCHHHHHHHHHHH--HHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCEEEEE----ECC
Q ss_conf 6421247--311677512344333335--78875202222---110134666789987776675059889999----746
Q gi|254780648|r 213 IPGIIKN--AHQGAGIGDRFLKHTERT--HVLLHIVSALE---ENVQAAYQCILDELSAYNSELRKKIEIVGL----SQI 281 (335)
Q Consensus 213 ~PGlIeg--A~~~~glG~~FLrhIer~--~vLl~VVD~s~---~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVl----NKi 281 (335)
+-|.+. ..+|...| +|+-.+. +-++-.++..+ +.|. ++--=...--.....|..+|.++++ .=.
T Consensus 85 -~~LfphltV~~Nl~~g---~~~~~~~~~~~~~~~l~l~~l~~r~p~-~LSGGq~QRvaiARAL~~~P~lLllDEP~s~L 159 (352)
T PRK11144 85 -ARLFPHYKVRGNLRYG---MAKSMPAQFDKIVSLLGIEPLLDRYPG-SLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred -CCCCCCCCHHHHHHHH---CHHHHHHHHHHHHHHCCCHHHHHCCHH-HCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf -6337776889966510---005659999999977599567627864-65924523499999872499999987840027
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 589988999999999986299489998
Q gi|254780648|r 282 DTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 282 Dl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
|.....++...++++.+..+.+++.||
T Consensus 160 D~~~~~~i~~~l~~l~~~~~~til~VT 186 (352)
T PRK11144 160 DLPRKRELLPYLERLAQEINIPILYVS 186 (352)
T ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 977999999999999997398899993
No 382
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.72 E-value=0.017 Score=34.92 Aligned_cols=54 Identities=28% Similarity=0.351 Sum_probs=38.6
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCC
Q ss_conf 99999763011244216777530354101454012121100000010266329868998226421
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGI 216 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGl 216 (335)
+.++++-=--|||||.--|||||||+.|++ .+.|.-|.|...+..-.+.--+|+
T Consensus 43 VSFeV~kGE~vGIIG~NGAGKSTLLKiIaG-----------I~~PTsG~V~V~Gk~sLL~lgaGf 96 (549)
T PRK13545 43 ISFEVPEGEIVGIVGLNGSGKSTLSNLIAG-----------VTMPNKGTVDIKGSAALIAISSGL 96 (549)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHC-----------CCCCCCEEEEECCEEEEEEECCCC
T ss_conf 257864898999988999989999999968-----------988986089994689877405576
No 383
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548 Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=96.69 E-value=0.0043 Score=38.54 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=39.2
Q ss_pred CEEEEECCCCCCCEEEEEE-------C---------CCCCHHHHHHHCCCEECC------EEEEECC--EEEEEECCCCC
Q ss_conf 1124421677753035410-------1---------454012121100000010------2663298--68998226421
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASV-------T---------RAKPKIADYPFTTLYPNL------GIVKEGY--KEFILADIPGI 216 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~l-------s---------~ak~kIa~ypFTT~~P~l------Gvv~~~~--~~~~i~D~PGl 216 (335)
.-|+|--|-|||+||--++ - +++..-+||= ..+-+- .|+.+++ .=+-+.||||=
T Consensus 13 ~FAIISHPDAGKTT~TEK~LLyG~AIQ~AG~VK~r~S~~~A~SDWM--~ME~QRGISIT~~VlQF~Y~~~l~NLLDTPGH 90 (530)
T TIGR00503 13 TFAIISHPDAGKTTLTEKVLLYGGAIQTAGAVKGRGSQRHAKSDWM--EMEKQRGISITTSVLQFPYRDCLVNLLDTPGH 90 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH--HHHHCCCCEEEEEEEEECCCCCEEECCCCCCC
T ss_conf 5436616888742467888874256652244122001221221378--87505881444127741457745620368588
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 2473116775123443333357887520222
Q gi|254780648|r 217 IKNAHQGAGIGDRFLKHTERTHVLLHIVSAL 247 (335)
Q Consensus 217 IegA~~~~glG~~FLrhIer~~vLl~VVD~s 247 (335)
+.-||+. + |-+--+|.-|.|||++
T Consensus 91 -~DFSEDT---Y---RTL~A~D~~~M~IDaA 114 (530)
T TIGR00503 91 -EDFSEDT---Y---RTLTAVDNCLMVIDAA 114 (530)
T ss_pred -CCCCCHH---H---HHHHHHHHHEEEHHCC
T ss_conf -8764046---7---9999851230011112
No 384
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.64 E-value=0.011 Score=36.16 Aligned_cols=45 Identities=31% Similarity=0.323 Sum_probs=30.0
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECC
Q ss_conf 68999997630112442167775303541014540121211000000102663298
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGY 205 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~ 205 (335)
..+.|+++-=-=+||+|.--||||||++.|++- +.|.-|.+...+
T Consensus 38 ~~vsf~i~~Gei~gLlGpNGaGKSTllk~l~Gl-----------~~p~~G~I~v~G 82 (236)
T cd03267 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL-----------LQPTSGEVRVAG 82 (236)
T ss_pred CCCEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECC
T ss_conf 680578848959999999983099999999649-----------488715999999
No 385
>KOG1533 consensus
Probab=96.64 E-value=0.00093 Score=42.60 Aligned_cols=122 Identities=22% Similarity=0.331 Sum_probs=63.9
Q ss_pred EEEEECCCCCCCEEEEEECC---C-CC--HH-----H----HHHHC-------C---------CEECCEE----------
Q ss_conf 12442167775303541014---5-40--12-----1----21100-------0---------0001026----------
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTR---A-KP--KI-----A----DYPFT-------T---------LYPNLGI---------- 200 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~---a-k~--kI-----a----~ypFT-------T---------~~P~lGv---------- 200 (335)
..+||.|.+||||..+..|. + .+ .| | .||+. | +-||-|.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~ 84 (290)
T KOG1533 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEAN 84 (290)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 68876999985311320999999748962799568765678887765199971399999985879961279999999854
Q ss_pred -------EEECCEEEEEECCCCCCCC-CCCCCCCHHHHHHHHHHHH---HHHHHCCCC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf -------6329868998226421247-3116775123443333357---887520222-211013466678998777667
Q gi|254780648|r 201 -------VKEGYKEFILADIPGIIKN-AHQGAGIGDRFLKHTERTH---VLLHIVSAL-EENVQAAYQCILDELSAYNSE 268 (335)
Q Consensus 201 -------v~~~~~~~~i~D~PGlIeg-A~~~~glG~~FLrhIer~~---vLl~VVD~s-~~d~~~~~~~I~~EL~~y~~~ 268 (335)
++.....+++.|-||=+|= .|.+. -.+.+|.+|+.+ +.++++|.. ..+|..-+..+.--|.. .-
T Consensus 85 idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~--l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~t--Ml 160 (290)
T KOG1533 85 IDWLLEKLKPLTDHYVLFDCPGQVELFTHHDS--LNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLAT--ML 160 (290)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCEEEEECCCH--HHHHHHHHHHCCCEEEEEEEEECEEECCHHHHHHHHHHHHHH--HH
T ss_conf 49999974523474899957982798742560--999999999769537999733021437848999999999999--98
Q ss_pred HCCCCEEEEEECCCCCCHH
Q ss_conf 5059889999746589988
Q gi|254780648|r 269 LRKKIEIVGLSQIDTVDSD 287 (335)
Q Consensus 269 L~~Kp~IIVlNKiDl~~~e 287 (335)
..+-|.+=|+.|+|++..-
T Consensus 161 ~melphVNvlSK~Dl~~~y 179 (290)
T KOG1533 161 HMELPHVNVLSKADLLKKY 179 (290)
T ss_pred HHCCCCHHHHHHHHHHHHH
T ss_conf 6236500142576778761
No 386
>KOG0467 consensus
Probab=96.61 E-value=0.018 Score=34.80 Aligned_cols=110 Identities=17% Similarity=0.224 Sum_probs=58.6
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHH-----HC-CC--EECCE------EEE--ECCEEEEEECCCCCCCCCCCC
Q ss_conf 0112442167775303541014540121211-----00-00--00102------663--298689982264212473116
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYP-----FT-TL--YPNLG------IVK--EGYKEFILADIPGIIKNAHQG 223 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~yp-----FT-T~--~P~lG------vv~--~~~~~~~i~D~PGlIegA~~~ 223 (335)
-.+.||---.-||+||..+|-.+..-|...- |- |+ +...| .+. ..+..+.++|.||-+.=.|+=
T Consensus 10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sev 89 (887)
T KOG0467 10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEV 89 (887)
T ss_pred EEEEEEEEECCCCCCHHHHHHHHCCEECHHHCCCEEECCCCCHHHHHCEEEECCCCCCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 58999999648853257778750667415335606621046256661624431311101376589985589864506553
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 77512344333335788752022221101346667899877766750598899997465
Q gi|254780648|r 224 AGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQID 282 (335)
Q Consensus 224 ~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiD 282 (335)
. -...-||.-+.+||+.+.-..+.+..+++- |- .....++|+||||
T Consensus 90 s-------sas~l~d~alvlvdvvegv~~qt~~vlrq~---~~---~~~~~~lvinkid 135 (887)
T KOG0467 90 S-------SASRLSDGALVLVDVVEGVCSQTYAVLRQA---WI---EGLKPILVINKID 135 (887)
T ss_pred H-------HHHHHCCCCEEEEEECCCCCHHHHHHHHHH---HH---CCCCEEEEEEHHH
T ss_conf 2-------666504771899960025455389999999---97---1674599973166
No 387
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0045 Score=38.46 Aligned_cols=144 Identities=16% Similarity=0.158 Sum_probs=65.6
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE------------EEECCCCCCCC
Q ss_conf 999997630112442167775303541014540121211000000102663298689------------98226421247
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF------------ILADIPGIIKN 219 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~------------~i~D~PGlIeg 219 (335)
+.|++.-=-=++|+|..-+|||||++.|+.- ..|.-|.|..++..+ ++=| +.|...
T Consensus 19 vsl~v~~Ge~~~iiGpSGsGKSTllr~i~Gl-----------~~p~~G~I~~~g~~v~~~~~~~r~ig~VfQ~-~~Lfp~ 86 (232)
T cd03300 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF-----------ETPTSGEILLDGKDITNLPPHKRPVNTVFQN-YALFPH 86 (232)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEECCCCCHHHCCEEEEECC-CCCCCC
T ss_conf 1748879989999999998399999999779-----------9998539999999999999545775699148-854778
Q ss_pred --CCCCCCCHHHHHH-----HHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCEEEEE----ECCCCCC
Q ss_conf --3116775123443-----3333578875202222---110134666789987776675059889999----7465899
Q gi|254780648|r 220 --AHQGAGIGDRFLK-----HTERTHVLLHIVSALE---ENVQAAYQCILDELSAYNSELRKKIEIVGL----SQIDTVD 285 (335)
Q Consensus 220 --A~~~~glG~~FLr-----hIer~~vLl~VVD~s~---~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVl----NKiDl~~ 285 (335)
..+|...+.+.-+ .-+|.+-++-+++..+ .-|. ++.-=...--.....|..+|.++++ .-.|...
T Consensus 87 ltV~~Nva~~l~~~~~~~~e~~~rv~e~l~~v~l~~~~~~~p~-~LSGGqkQRVaiARAl~~~P~llllDEP~s~LD~~~ 165 (232)
T cd03300 87 LTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPS-QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKL 165 (232)
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHH-HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHH
T ss_conf 9199998779987699999999999999875897787619966-699899999999999865999999808876469999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88999999999986299489998
Q gi|254780648|r 286 SDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 286 ~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
...+...+.++.+..+..++.|+
T Consensus 166 ~~~i~~~l~~l~~~~~~T~i~VT 188 (232)
T cd03300 166 RKDMQLELKRLQKELGITFVFVT 188 (232)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 99999999999998599999999
No 388
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0051 Score=38.13 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=33.2
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE
Q ss_conf 68999997630112442167775303541014540121211000000102663298689
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~ 208 (335)
..+.|++.-=.=++|+|..-||||||++.|.+- ..|.-|.+..++..+
T Consensus 16 ~~vs~~v~~Ge~~~iiGpSGsGKSTLlr~i~Gl-----------~~p~~G~I~~~G~di 63 (235)
T cd03299 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGF-----------IKPDSGKILLNGKDI 63 (235)
T ss_pred CCCEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEEC
T ss_conf 014879889989999999963599999999749-----------999965999999999
No 389
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.0045 Score=38.45 Aligned_cols=140 Identities=16% Similarity=0.257 Sum_probs=70.5
Q ss_pred EEEEECCCCCCCEEEEEECCC-----C-CHHH----------HHH-HCCCEECCEEE---------------EECCEEEE
Q ss_conf 124421677753035410145-----4-0121----------211-00000010266---------------32986899
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRA-----K-PKIA----------DYP-FTTLYPNLGIV---------------KEGYKEFI 209 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~a-----k-~kIa----------~yp-FTT~~P~lGvv---------------~~~~~~~~ 209 (335)
++|||.+-|||+|-+.+|... . -+|| .+. .-|---++||- ...++++|
T Consensus 351 ~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~l~~~~lv 430 (557)
T PRK12727 351 IALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLV 430 (557)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCCCCEE
T ss_conf 78743777673117999999999973998189997266408799999999998397579828999999999983699989
Q ss_pred EECCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
Q ss_conf 822642124731167751--234433333578875202222110134666789987776675059889999746589988
Q gi|254780648|r 210 LADIPGIIKNAHQGAGIG--DRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD 287 (335)
Q Consensus 210 i~D~PGlIegA~~~~glG--~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e 287 (335)
++||+|.= +.+.-+- .++|+...+.+. +.|+.++. +...+.+-+..|.. -.+.-++++|+|-. .
T Consensus 431 liDTaG~~---~rd~~~~~~~~~l~~~~~~~~-~Lvl~a~~-----~~~~l~~~~~~~~~---~~~~~~i~TKlDE~--~ 496 (557)
T PRK12727 431 LIDTAGMG---QRDRALAAQLNWLRAARQVTS-LLVLPANA-----HFSDLDEVVRRFAH---AKPQGVVLTKLDET--G 496 (557)
T ss_pred EEECCCCC---CCCHHHHHHHHHHHCCCCCCE-EEEEECCC-----CHHHHHHHHHHHCC---CCCCEEEEEECCCC--C
T ss_conf 99499988---469999999998751477635-99996889-----98999999998537---99874899614367--8
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 9999999999862994899988878899999
Q gi|254780648|r 288 TLARKKNELATQCGQVPFEFSSITGHGIPQI 318 (335)
Q Consensus 288 ~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL 318 (335)
.+-..+.-+.. ...++.+++ +|..|.|=
T Consensus 497 ~~G~~l~~~~~-~~lp~~y~t--~GQ~VPeD 524 (557)
T PRK12727 497 RFGSALSVVVD-HQMPITWVT--DGQRVPDD 524 (557)
T ss_pred CCCHHHHHHHH-HCCCEEEEC--CCCCCCCC
T ss_conf 70399999999-689828975--89828523
No 390
>KOG2485 consensus
Probab=96.48 E-value=0.0043 Score=38.58 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=57.4
Q ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHHH----HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 9982264212473116775123443333----357887520222211013466678998777667505988999974658
Q gi|254780648|r 208 FILADIPGIIKNAHQGAGIGDRFLKHTE----RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDT 283 (335)
Q Consensus 208 ~~i~D~PGlIegA~~~~glG~~FLrhIe----r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl 283 (335)
...-+.|| |+.++ ||.|+ -.+.++-|-|+-- |... ++|+ +..-+..||+|||+||+||
T Consensus 24 ~~~~wfpg-----Hmaka-----lr~i~~~l~~~D~iiEvrDaRi--PLss----rn~~--~~~~~~~k~riiVlNK~DL 85 (335)
T KOG2485 24 MPRRWFPG-----HMAKA-----LRAIQNRLPLVDCIIEVRDARI--PLSS----RNEL--FQDFLPPKPRIIVLNKMDL 85 (335)
T ss_pred CCCCCCCH-----HHHHH-----HHHHHHHCCCCCEEEEEECCCC--CCCC----CCHH--HHHHCCCCCEEEEEECCCC
T ss_conf 86565764-----78999-----9999865565537999611346--7765----5488--8973377754999840103
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCC--HHHHHHHHHHHHHHH
Q ss_conf 9988999999999986299489998887889--999999999999854
Q gi|254780648|r 284 VDSDTLARKKNELATQCGQVPFEFSSITGHG--IPQILECLHDKIFSI 329 (335)
Q Consensus 284 ~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~G--I~eL~~~I~e~L~~~ 329 (335)
++..+....++.+..+....++..++....+ +..++..+....+++
T Consensus 86 ad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l 133 (335)
T KOG2485 86 ADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEEL 133 (335)
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 683331599999876203442564323655301010899999999777
No 391
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.47 E-value=0.0011 Score=42.19 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=41.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 0598899997465899889999999999862994899988878899999999999
Q gi|254780648|r 270 RKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILECLHD 324 (335)
Q Consensus 270 ~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e 324 (335)
..-+-+||+||+||.++++.... .......+.+++.+||.+++|+++|.+.+..
T Consensus 108 ~~i~pvivlnK~DL~~~~~~~~~-~~~~~~~gy~v~~~S~~~~~g~~~L~~~l~~ 161 (287)
T cd01854 108 AGIEPVIVLTKADLLDDEEEELE-LVEALALGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred CCCCEEEEEECHHCCCCHHHHHH-HHHHHCCCCEEEEEECCCCCCHHHHHHHHCC
T ss_conf 79968999986221994899999-9998729984999966898588999987479
No 392
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.43 E-value=0.003 Score=39.56 Aligned_cols=31 Identities=35% Similarity=0.407 Sum_probs=23.3
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
+.|+++-=-=|||+|..-||||||++.|++-
T Consensus 29 isl~i~~GE~v~ivG~sGsGKSTLl~~i~Gl 59 (228)
T PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 3889999989999999985899999999669
No 393
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0053 Score=38.00 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=29.4
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 99999763011244216777530354101454012121100000010266329868
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
+.|+++-=.=+||+|.--||||||++.++.-. .|.-|.+..++..
T Consensus 19 vs~~i~~Gei~~iiGpnGaGKSTl~~~i~Gl~-----------~p~~G~I~~~g~~ 63 (213)
T cd03259 19 LSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE-----------RPDSGEILIDGRD 63 (213)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-----------CCCCEEEEECCEE
T ss_conf 17798899899999999973999999997599-----------9897089999999
No 394
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.42 E-value=0.0056 Score=37.86 Aligned_cols=139 Identities=15% Similarity=0.111 Sum_probs=61.7
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999763011244216777530354101454012121100000010266329868998226421247311677512344
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFL 231 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FL 231 (335)
+.|+++-=-=+||+|.--||||||++.|++-. ...|.-|.+..++..+. +.|-- +-+..+.++..+.-
T Consensus 19 vsl~v~~Gei~~iiGpnGaGKSTLl~~i~G~~---------~~~~~~G~I~~~g~~i~--~~~~~-~~~~~gi~~~~q~~ 86 (200)
T cd03217 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHP---------KYEVTEGEILFKGEDIT--DLPPE-ERARLGIFLAFQYP 86 (200)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHCCCC---------CCCCCCCEEEECCEECC--CCCHH-HHHHCCEEEECCCH
T ss_conf 05688799899999689999999999970777---------77852007999999988--69999-99976948963676
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE----ECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 33333578875202222110134666789987776675059889999----74658998899999999998629948999
Q gi|254780648|r 232 KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGL----SQIDTVDSDTLARKKNELATQCGQVPFEF 307 (335)
Q Consensus 232 rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVl----NKiDl~~~e~~~~~~~~l~~~~~~~vi~I 307 (335)
..++...+.-+ ++..... +.-=...--.....|..+|.++++ +=.|....+.+.+.++++.+. +..++.|
T Consensus 87 ~~~~~~~~~~~-l~~~~~~----LSGGekqrv~iaral~~~P~lllLDEPtsgLD~~~~~~i~~~i~~l~~~-g~tiiii 160 (200)
T cd03217 87 PEIPGVKNADF-LRYVNEG----FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLII 160 (200)
T ss_pred HHCCCCCHHHH-HHHHCCC----CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEE
T ss_conf 87079849999-9764636----7999999999999996099999996962269999999999999999857-9999999
Q ss_pred E
Q ss_conf 8
Q gi|254780648|r 308 S 308 (335)
Q Consensus 308 S 308 (335)
|
T Consensus 161 t 161 (200)
T cd03217 161 T 161 (200)
T ss_pred E
T ss_conf 9
No 395
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.38 E-value=0.0072 Score=37.20 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=28.7
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEE
Q ss_conf 01124421677753035410145401212110000001026632986899
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFI 209 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~ 209 (335)
-=+||+|.--||||||++.|++-. .|.-|.+..++..+.
T Consensus 27 ei~~liGpNGaGKSTL~~~i~Gl~-----------~p~~G~I~~~G~~i~ 65 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLL-----------PVKSGSIRLDGEDIT 65 (230)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC-----------CCCCEEEEECCEECC
T ss_conf 799999999940999999997799-----------999549999999999
No 396
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.34 E-value=0.015 Score=35.35 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=29.1
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE
Q ss_conf 9999976301124421677753035410145401212110000001026632986
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK 206 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~ 206 (335)
+.|+.+-=-=+||+|.--||||||++.|++- +.|.-|.+..++.
T Consensus 24 vs~~i~~Gei~gllG~NGaGKSTllk~i~Gl-----------~~p~~G~i~i~G~ 67 (218)
T cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL-----------LEPDAGFATVDGF 67 (218)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCCEEEECCE
T ss_conf 2789859829999999998499999999779-----------7789748999999
No 397
>KOG0054 consensus
Probab=96.34 E-value=0.047 Score=32.30 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=13.0
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
+.++.|-=.=||+||..-+||||||+++.+.
T Consensus 540 In~~i~~G~lvaVvG~vGsGKSSLL~AiLGE 570 (1381)
T KOG0054 540 INFEIKKGQLVAVVGPVGSGKSSLLSAILGE 570 (1381)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 1589628988999899988889999999658
No 398
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.32 E-value=0.011 Score=36.07 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=27.2
Q ss_pred HHHCCCCEEEEEE----CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 6750598899997----46589988999999999986299489998
Q gi|254780648|r 267 SELRKKIEIVGLS----QIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 267 ~~L~~Kp~IIVlN----KiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
..|...|.++++- =.|.....++.+.+.++.+..+..++.||
T Consensus 166 raL~~~P~lLlLDEPt~gLD~~~~~~i~~~i~~l~~~~g~tvl~it 211 (255)
T PRK11300 166 RCMVTQPRILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE 211 (255)
T ss_pred HHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9997299969981875469999999999999999971597999992
No 399
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.01 Score=36.27 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=28.2
Q ss_pred EEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 999763011244216777530354101454012121100000010266329868
Q gi|254780648|r 154 LKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 154 lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
|+++-=-=+||+|.--||||||++.|++- +.|.-|.+..++..
T Consensus 21 ~~v~~Gei~gllG~NGaGKTTll~~i~Gl-----------~~p~~G~i~i~G~~ 63 (210)
T cd03269 21 FSVEKGEIFGLLGPNGAGKTTTIRMILGI-----------ILPDSGEVLFDGKP 63 (210)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCCEEEECCEE
T ss_conf 78879959999989998499999999600-----------26689989999986
No 400
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.28 E-value=0.032 Score=33.29 Aligned_cols=130 Identities=14% Similarity=0.156 Sum_probs=76.2
Q ss_pred CCEECCEEEE----ECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC--HHHH--HHHHHHHHHH
Q ss_conf 0000102663----298689982264212473116775123443333357887520222211--0134--6667899877
Q gi|254780648|r 193 TLYPNLGIVK----EGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALEEN--VQAA--YQCILDELSA 264 (335)
Q Consensus 193 T~~P~lGvv~----~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d--~~~~--~~~I~~EL~~ 264 (335)
.+.|..|+.+ .+...+.+.|+-|= -++-+-|=+- -+...+++||++.++=| ..++ ...+.+-|..
T Consensus 167 ~R~~TtGI~e~~f~~~~~~~~~~DVGGQ---RseRrKWi~~----Fd~V~aiiFv~slS~yDq~l~Ed~~~Nrm~eSl~L 239 (342)
T smart00275 167 SRVPTTGIQETAFIVKKLFFRMFDVGGQ---RSERKKWIHC----FDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNL 239 (342)
T ss_pred HCCCCCCCEEEEEEECCEEEEEECCCCC---CCHHHHHHHH----HCCCCEEEEEEEHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 4065578416888768846999607987---4023337776----16776899995122315456577766089999999
Q ss_pred H-----HHHHCCCCEEEEEECCCCCCH--------------------HHHHHH-HHHHHHHC----CCCE--EEEECCCC
Q ss_conf 7-----667505988999974658998--------------------899999-99999862----9948--99988878
Q gi|254780648|r 265 Y-----NSELRKKIEIVGLSQIDTVDS--------------------DTLARK-KNELATQC----GQVP--FEFSSITG 312 (335)
Q Consensus 265 y-----~~~L~~Kp~IIVlNKiDl~~~--------------------e~~~~~-~~~l~~~~----~~~v--i~ISA~tg 312 (335)
| ++-+.+.|.|+.+||+|+..+ +...+. ...+.... ..++ ..++|..-
T Consensus 240 F~~I~n~~~f~~t~iiLfLNK~Dlf~eKi~~~~l~~~fp~y~g~~~~~~~~~fi~~~F~~~~~~~~~r~~y~h~T~AtDt 319 (342)
T smart00275 240 FESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDT 319 (342)
T ss_pred HHHHHCCHHHCCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEECH
T ss_conf 99996486345788799975589999872799601159999999888999999999999857798897268666731450
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 89999999999999854
Q gi|254780648|r 313 HGIPQILECLHDKIFSI 329 (335)
Q Consensus 313 ~GI~eL~~~I~e~L~~~ 329 (335)
.++..+...+.+.+...
T Consensus 320 ~~i~~vf~~v~d~Il~~ 336 (342)
T smart00275 320 RNIRVVFDAVKDIILQR 336 (342)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999
No 401
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.27 E-value=0.018 Score=34.87 Aligned_cols=145 Identities=20% Similarity=0.215 Sum_probs=64.1
Q ss_pred EEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE-----------EEECCCCCCCCCC-
Q ss_conf 9997630112442167775303541014540121211000000102663298689-----------9822642124731-
Q gi|254780648|r 154 LKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF-----------ILADIPGIIKNAH- 221 (335)
Q Consensus 154 lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~-----------~i~D~PGlIegA~- 221 (335)
|+++-=-=+||+|.--||||||++.+++- +.|.-|.+..++..+ .+.+-|++.+..+
T Consensus 21 ~~v~~Gei~gllG~NGaGKSTLl~~i~Gl-----------~~p~~G~i~i~G~~~~~~~~~~~~ig~~~~~~~l~~~ltv 89 (208)
T cd03268 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGL-----------IKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCCEEEECCEECCCCHHHHHHEEEEECCCCCCCCCCH
T ss_conf 68869819999999999999999999578-----------3789899999999999796857108999477767898899
Q ss_pred -CCCCCHHHHH---HHH--HHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE----CCCCCCHHHH
Q ss_conf -1677512344---333--33578875202222--1101346667899877766750598899997----4658998899
Q gi|254780648|r 222 -QGAGIGDRFL---KHT--ERTHVLLHIVSALE--ENVQAAYQCILDELSAYNSELRKKIEIVGLS----QIDTVDSDTL 289 (335)
Q Consensus 222 -~~~glG~~FL---rhI--er~~vLl~VVD~s~--~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlN----KiDl~~~e~~ 289 (335)
|+ .+|. +.+ ++.+-++-.++..+ ..+..++--=...--..-..|...|.++++- =.|....+.+
T Consensus 90 ~e~----l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrl~la~al~~~p~lliLDEPt~GLD~~~~~~i 165 (208)
T cd03268 90 REN----LRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL 165 (208)
T ss_pred HHH----HHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 999----9999987499889999999980995033690356999999999999998569999999388768999999999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf 99999999862994899988878899
Q gi|254780648|r 290 ARKKNELATQCGQVPFEFSSITGHGI 315 (335)
Q Consensus 290 ~~~~~~l~~~~~~~vi~ISA~tg~GI 315 (335)
.+.+.++.+ .+..++ +|++.=+-+
T Consensus 166 ~~~l~~l~~-~g~til-~~sH~l~e~ 189 (208)
T cd03268 166 RELILSLRD-QGITVL-ISSHLLSEI 189 (208)
T ss_pred HHHHHHHHH-CCCEEE-EECCCHHHH
T ss_conf 999999995-899999-989868999
No 402
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.013 Score=35.56 Aligned_cols=141 Identities=16% Similarity=0.195 Sum_probs=76.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCC-CCCCCCCCCCCCHHHH-----HHHHH
Q ss_conf 12442167775303541014540121211000000102663298689982264-2124731167751234-----43333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIP-GIIKNAHQGAGIGDRF-----LKHTE 235 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~P-GlIegA~~~~glG~~F-----LrhIe 235 (335)
-||.|..-+||+||+|.|+. .+.|--|.+..++..++ |.- |+--.+|+ +-.|+-| ..|..
T Consensus 27 TAlFG~SGsGKTslin~IaG-----------L~rPdeG~I~lngr~L~--Ds~k~i~lp~~~-RriGYVFQDARLFpH~t 92 (352)
T COG4148 27 TALFGPSGSGKTSLINMIAG-----------LTRPDEGRIELNGRVLV--DAEKGIFLPPEK-RRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEECCCCCCHHHHHHHHHC-----------CCCCCCCEEEECCEEEE--CCCCCCCCCHHH-HEEEEEEECCCCCCCEE
T ss_conf 99964788871618989743-----------47766618998988865--156674467546-11356740020166517
Q ss_pred HHHHHHHHCCCCCC---CHHHHHHHHHHHHHHH--------------HHHHCCCCEEEEE----ECCCCCCHHHHHHHHH
Q ss_conf 35788752022221---1013466678998777--------------6675059889999----7465899889999999
Q gi|254780648|r 236 RTHVLLHIVSALEE---NVQAAYQCILDELSAY--------------NSELRKKIEIVGL----SQIDTVDSDTLARKKN 294 (335)
Q Consensus 236 r~~vLl~VVD~s~~---d~~~~~~~I~~EL~~y--------------~~~L~~Kp~IIVl----NKiDl~~~e~~~~~~~ 294 (335)
=..-|-|-.-.+.. |-.-++--|..-|..| ...|+.+|.++.+ .-.|++.+.++...++
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylE 172 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLE 172 (352)
T ss_pred EECCHHHHCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCHHHCCCCHHHHHHHHHH
T ss_conf 73220010143536779999998484867850877567615567778888754977343068403236510467789999
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99986299489998887889999999
Q gi|254780648|r 295 ELATQCGQVPFEFSSITGHGIPQILE 320 (335)
Q Consensus 295 ~l~~~~~~~vi~ISA~tg~GI~eL~~ 320 (335)
.+.+..+.|++++|- -++|+..
T Consensus 173 RL~~e~~IPIlYVSH----S~~Ev~R 194 (352)
T COG4148 173 RLRDEINIPILYVSH----SLDEVLR 194 (352)
T ss_pred HHHHHCCCCEEEEEC----CHHHHHH
T ss_conf 987621887899936----8999996
No 403
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.0057 Score=37.83 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=65.7
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC-CC-----HHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCC--CCCC
Q ss_conf 9999976301124421677753035410145-40-----12121100000010266329868998226421247--3116
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA-KP-----KIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKN--AHQG 223 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a-k~-----kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIeg--A~~~ 223 (335)
+.|+++-=-=+||+|.--||||||++.+++- +| .+...+-+...+.+|++- =| |.|++. ..++
T Consensus 23 vsl~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~ig~vf--------Q~-~~L~p~~tv~en 93 (220)
T cd03293 23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF--------QQ-DALLPWLTVLDN 93 (220)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCEEEEE--------CC-CCCCCCCCHHHH
T ss_conf 188987998999999999579999999975999887389999996788898879992--------48-853778879999
Q ss_pred CCCHHHHH-----HHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE----CCCCCCHHHHHH
Q ss_conf 77512344-----33333578875202222---1101346667899877766750598899997----465899889999
Q gi|254780648|r 224 AGIGDRFL-----KHTERTHVLLHIVSALE---ENVQAAYQCILDELSAYNSELRKKIEIVGLS----QIDTVDSDTLAR 291 (335)
Q Consensus 224 ~glG~~FL-----rhIer~~vLl~VVD~s~---~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlN----KiDl~~~e~~~~ 291 (335)
.-++.+.. ..-+++.-++..++..+ ..|. ++--=...--.....|...|.++++- -.|......+.+
T Consensus 94 i~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-~LSGGqkQRvaiARaL~~~P~llllDEPts~LD~~~~~~i~~ 172 (220)
T cd03293 94 VALGLELQGVPKAEARERAEELLELVGLSGFENAYPH-QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQE 172 (220)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHH-HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 9889986599989999999999998789547618931-299999999999999866999999808876569999999999
Q ss_pred HHHHHHHHCCCCEEEEE
Q ss_conf 99999986299489998
Q gi|254780648|r 292 KKNELATQCGQVPFEFS 308 (335)
Q Consensus 292 ~~~~l~~~~~~~vi~IS 308 (335)
.+.++.+..+..++.+|
T Consensus 173 ~l~~l~~~~g~tii~vT 189 (220)
T cd03293 173 ELLDIWRETGKTVLLVT 189 (220)
T ss_pred HHHHHHHHCCCEEEEEC
T ss_conf 99999985199999988
No 404
>KOG1249 consensus
Probab=96.23 E-value=0.00081 Score=42.95 Aligned_cols=46 Identities=28% Similarity=0.372 Sum_probs=32.7
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCC------------HHHHHHHCCCEEC
Q ss_conf 999997630112442167775303541014540------------1212110000001
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKP------------KIADYPFTTLYPN 197 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~------------kIa~ypFTT~~P~ 197 (335)
+..-...=-|+=++|..||||||++|+|..... -+.+||.||+.|.
T Consensus 206 lvd~~df~Gdf~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTtlsll 263 (572)
T KOG1249 206 LVDIVDFRGDFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTTLSLL 263 (572)
T ss_pred HHHEEECCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHH
T ss_conf 6411231586443210002403678887641124456562044420136873203420
No 405
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.22 E-value=0.016 Score=35.13 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=33.1
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECC
Q ss_conf 899999763011244216777530354101454012121100000010266329868998226
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADI 213 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~ 213 (335)
.+.|+++-=-=+||+|.--||||||++.++.- ..|.-|.+...+..+.+...
T Consensus 20 dvsl~i~~Ge~~~iiG~nGaGKSTLl~~l~gl-----------~~p~~G~i~i~g~~~~~~~~ 71 (242)
T PRK11124 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNLL-----------EMPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCEEEEECCEEEECCCC
T ss_conf 20778879989999999997199999999658-----------88886089999999634678
No 406
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.20 E-value=0.019 Score=34.70 Aligned_cols=48 Identities=29% Similarity=0.306 Sum_probs=34.4
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE
Q ss_conf 68999997630112442167775303541014540121211000000102663298689
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~ 208 (335)
..+.|++.-=-=|||+|.--||||||++.|+.- +.|.-|.+..++...
T Consensus 39 ~~isf~i~~GeivgilG~NGaGKSTLl~~i~Gl-----------~~p~~G~I~i~G~~~ 86 (224)
T cd03220 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI-----------YPPDSGTVTVRGRVS 86 (224)
T ss_pred CCEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCCEEEECCEEC
T ss_conf 670789838989999979998199999999758-----------777877699998984
No 407
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.16 E-value=0.011 Score=36.03 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=23.2
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
+.|++.-=-=++|+|..-|||||||+.|++-
T Consensus 22 vsl~i~~Ge~~~llGpsG~GKSTllr~i~Gl 52 (369)
T PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 3889879989999999973699999999779
No 408
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.14 E-value=0.011 Score=36.00 Aligned_cols=46 Identities=22% Similarity=0.153 Sum_probs=32.1
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 899999763011244216777530354101454012121100000010266329868
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
.+.|+++-=-=+||+|.--||||||++.++.- ..|.-|.|..++..
T Consensus 27 ~vs~~i~~GE~v~iiG~sGsGKSTLl~~i~Gl-----------~~p~~G~I~~~g~~ 72 (233)
T PRK11629 27 NVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL-----------DTPTSGDVIFNGQP 72 (233)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCEEEEECCEE
T ss_conf 62899889989999999994099999999669-----------99986399999999
No 409
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.14 E-value=0.027 Score=33.78 Aligned_cols=136 Identities=17% Similarity=0.137 Sum_probs=67.7
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHH
Q ss_conf 68999997630112442167775303541014540121211000000102663298689982264212473116775123
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDR 229 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~ 229 (335)
..+.|++.-=-=+||||.--||||||++.+++-. .|.-|-|..++..+. +.|-- + ..+..++-.+
T Consensus 16 ~~is~~i~~Ge~~~liG~nGsGKTTLl~~i~G~~-----------~~~~G~I~~~g~~i~--~~~~~-~-~~~~i~~v~Q 80 (180)
T cd03214 16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-----------KPSSGEILLDGKDLA--SLSPK-E-LARKIAYVPQ 80 (180)
T ss_pred ECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-----------CCCCCEEEECCEECC--CCCHH-H-HHCCCCHHHH
T ss_conf 0437788699799999899988999999995798-----------998728999999989--69999-9-9554649999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE----ECCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 4433333578875202222110134666789987776675059889999----746589988999999999986299489
Q gi|254780648|r 230 FLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGL----SQIDTVDSDTLARKKNELATQCGQVPF 305 (335)
Q Consensus 230 FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVl----NKiDl~~~e~~~~~~~~l~~~~~~~vi 305 (335)
.|+ +. .+-+..+..+. ++--=....-.....|..+|.++++ +=.|.....++.+.+.++.+..+..++
T Consensus 81 ~l~---~~----~l~~~~~~~~~-~LSGGqkQrv~iA~aL~~~P~ililDEPts~LD~~~~~~i~~~i~~l~~~~~~tii 152 (180)
T cd03214 81 ALE---LL----GLAHLADRPFN-ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV 152 (180)
T ss_pred HHH---HC----CCHHHHCCCHH-HCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 999---85----99778649910-37999999999999998689647885875447999999999999999984698999
Q ss_pred EEE
Q ss_conf 998
Q gi|254780648|r 306 EFS 308 (335)
Q Consensus 306 ~IS 308 (335)
.+|
T Consensus 153 ~it 155 (180)
T cd03214 153 MVL 155 (180)
T ss_pred EEE
T ss_conf 990
No 410
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0061 Score=37.64 Aligned_cols=41 Identities=7% Similarity=0.140 Sum_probs=26.0
Q ss_pred HHCCCCEEEEEE----CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 750598899997----46589988999999999986299489998
Q gi|254780648|r 268 ELRKKIEIVGLS----QIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 268 ~L~~Kp~IIVlN----KiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
.|..+|.++++- -.|-....++.+.++++.+..+..++.||
T Consensus 154 AL~~~P~lllaDEPTs~LD~~~~~~il~ll~~l~~e~g~t~i~vT 198 (233)
T cd03258 154 ALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLIT 198 (233)
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 983399899965976646988999999999999997298999989
No 411
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.10 E-value=0.024 Score=34.00 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=23.2
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
+.|+++-=-=+||+|.-.+|||||++.|++.
T Consensus 271 vs~~v~~GEi~gi~G~nGsGKsTL~~~l~Gl 301 (501)
T PRK10762 271 VSFTLRKGEILGVSGLMGAGRTELMKVLYGA 301 (501)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 4447668818996678887688999998187
No 412
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.08 E-value=0.00084 Score=42.86 Aligned_cols=48 Identities=23% Similarity=0.334 Sum_probs=36.4
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCC
Q ss_conf 011244216777530354101454012121100000010266329868998226421
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGI 216 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGl 216 (335)
.=+|++|+-|+||+||+.+|... |+.+--.+|+++.+...|-+ |.||=
T Consensus 3 Pii~ivG~s~SGKTTLi~kli~~--------l~~~G~rV~~IKH~~H~f~~-D~pGk 50 (170)
T PRK10751 3 PLLAIAAWSGTGKTTLLKKLIPA--------LCARGIRPGLIKHTHHDMDV-DKPGK 50 (170)
T ss_pred CEEEEEECCCCCHHHHHHHHHHH--------HHHCCCEEEEEECCCCCCCC-CCCCC
T ss_conf 77999946999999999999999--------99879849999457778889-99984
No 413
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.0056 Score=37.85 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=22.7
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
+.|++.-=-=+||||.--|||||||+.++.-
T Consensus 20 isl~i~~Ge~~~iiGpsGsGKSTLl~~i~gl 50 (241)
T cd03256 20 VSLSINPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 3889999989999999983399999999749
No 414
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.018 Score=34.74 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=19.0
Q ss_pred EEEEECCCCCCCEEEEEECCC
Q ss_conf 124421677753035410145
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~a 182 (335)
+||+|..-||||||++.|+.-
T Consensus 26 ~~iiGpSGsGKSTll~~i~GL 46 (214)
T cd03297 26 TGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999973599999999849
No 415
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.009 Score=36.64 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=23.6
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
+.++.+-=-=+||+|..-|||||||+.|++.
T Consensus 26 is~~i~~Gei~~llG~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 26 FSGVVKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred EEEEECCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 0889809849999989999889999998378
No 416
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.0036 Score=39.04 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=65.1
Q ss_pred EEEEECCCCCCCEEEEEECC-------CCC-HHH----------HH------------HHCCCEE----CCEEEEECCEE
Q ss_conf 12442167775303541014-------540-121----------21------------1000000----10266329868
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTR-------AKP-KIA----------DY------------PFTTLYP----NLGIVKEGYKE 207 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~-------ak~-kIa----------~y------------pFTT~~P----~lGvv~~~~~~ 207 (335)
|+|||.+-|||+|-+.+|.. .+. +|+ .. ||-.... .-.+-...+..
T Consensus 177 i~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~~~~~D 256 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFD 256 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCC
T ss_conf 99989988757879999999999862676773799980787588999999999997880698578899999999724999
Q ss_pred EEEECCCCCCCCCCCCCCC---HHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 9982264212473116775---123443333357887-520222211013466678998777667505988999974658
Q gi|254780648|r 208 FILADIPGIIKNAHQGAGI---GDRFLKHTERTHVLL-HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDT 283 (335)
Q Consensus 208 ~~i~D~PGlIegA~~~~gl---G~~FLrhIer~~vLl-~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl 283 (335)
++++||+|.- +.+..+ -.+|++.+.. +.-+ .|++++.. +..+.+-+..|+. -.+.-++++|.|-
T Consensus 257 ~IlIDTAGrs---~~d~~~~~el~~~~~~~~~-~~~~~Lvlsat~~-----~~d~~~i~~~f~~---~~~~~~I~TKlDE 324 (388)
T PRK12723 257 LVLIDTIGKS---PKDFMKLAEMKELLNACGR-DAEFHLAVSSTTK-----TSDIKEIFHQFSP---FSYKTVIFTKLDE 324 (388)
T ss_pred EEEEECCCCC---CCCHHHHHHHHHHHHHCCC-CCEEEEEECCCCC-----HHHHHHHHHHHCC---CCCCEEEEEECCC
T ss_conf 9999589988---5689999999999974189-8459999879899-----9999999998427---9998499983227
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf 99889999999999862994899988878899
Q gi|254780648|r 284 VDSDTLARKKNELATQCGQVPFEFSSITGHGI 315 (335)
Q Consensus 284 ~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI 315 (335)
... .-..+. +....+.|+-+|. +|+++
T Consensus 325 t~~--~G~~l~-~~~~~~~Pi~yit--~GQ~V 351 (388)
T PRK12723 325 TTC--VGNLIS-LIHEMRKEVSYVT--DGQIV 351 (388)
T ss_pred CCC--CCHHHH-HHHHHCCCEEEEE--CCCCC
T ss_conf 898--669999-9999888869993--89968
No 417
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.00 E-value=0.0086 Score=36.75 Aligned_cols=31 Identities=29% Similarity=0.299 Sum_probs=23.1
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
+.|+++-=-=+||+|.--||||||++.+++-
T Consensus 23 is~~i~~Ge~~aliG~NGaGKSTLl~~i~Gl 53 (277)
T PRK13652 23 INFIAGRKQRIAVIGPNGAGKSTLFKHFNGI 53 (277)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 2879989989999999994799999999669
No 418
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.00 E-value=0.0075 Score=37.10 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=30.7
Q ss_pred EEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE
Q ss_conf 99997630112442167775303541014540121211000000102663298689
Q gi|254780648|r 153 WLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 153 ~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~ 208 (335)
.|++.-=-=+||+|.--||||||++.|+.- +.|.-|.+..++..+
T Consensus 20 s~~v~~Gei~~llGpNGAGKSTll~~i~Gl-----------~~p~~G~I~~~g~di 64 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVGL-----------VKPDSGKILLDGQDI 64 (232)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCEEEEECCEEC
T ss_conf 679899959999999996199999999779-----------999862999999999
No 419
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.99 E-value=0.0012 Score=41.97 Aligned_cols=46 Identities=28% Similarity=0.534 Sum_probs=35.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCC
Q ss_conf 1244216777530354101454012121100000010266329868998226421
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGI 216 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGl 216 (335)
|++||+.|+||+||+.+|-.. |+.+--.+|+++.+...|- .|.||=
T Consensus 4 i~ivG~snSGKTTLi~kli~~--------l~~~G~~V~~iKH~~H~f~-~D~~Gk 49 (159)
T cd03116 4 IGFVGYSGSGKTTLLEKLIPA--------LSARGLRVAVIKHDHHDFD-IDTPGK 49 (159)
T ss_pred EEEEECCCCCHHHHHHHHHHH--------HHHCCCEEEEEEECCCCCC-CCCCCC
T ss_conf 999967999999999999999--------9977985989973476777-778984
No 420
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.97 E-value=0.016 Score=35.16 Aligned_cols=143 Identities=13% Similarity=0.175 Sum_probs=65.6
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE------------EEEECCCCCCCC
Q ss_conf 99999763011244216777530354101454012121100000010266329868------------998226421247
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE------------FILADIPGIIKN 219 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~------------~~i~D~PGlIeg 219 (335)
+.|++.-=.=++|+|..-+||||||+.|++- ..|.-|.+..++.. +++-| +.|..-
T Consensus 19 isl~v~~Ge~~~i~GpSG~GKSTlLr~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~R~ig~VfQ~-~~LfP~ 86 (213)
T cd03301 19 LNLDIADGEFVVLLGPSGCGKTTTLRMIAGL-----------EEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN-YALYPH 86 (213)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEECCCCCHHHCCEEEEECC-CCCCCC
T ss_conf 1779869989999999988099999999769-----------9998639999999999999767887899458-764654
Q ss_pred --CCCCCCCHHHHHHHH------HHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCEEEEE----ECCCCC
Q ss_conf --311677512344333------33578875202222---110134666789987776675059889999----746589
Q gi|254780648|r 220 --AHQGAGIGDRFLKHT------ERTHVLLHIVSALE---ENVQAAYQCILDELSAYNSELRKKIEIVGL----SQIDTV 284 (335)
Q Consensus 220 --A~~~~glG~~FLrhI------er~~vLl~VVD~s~---~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVl----NKiDl~ 284 (335)
..+|.-+|.+ +++. +|.+-++-.+...+ ..|.+ +--=.+.--.....|..+|.++.+ .-.|..
T Consensus 87 ltV~eNI~~~l~-~~~~~~~e~~~~v~~~l~~~gl~~~~~~~P~~-LSGGqkQRVaiARAl~~~P~lLLlDEP~saLD~~ 164 (213)
T cd03301 87 MTVYDNIAFGLK-LRKVPKDEIDERVREVAELLQIEHLLDRKPKQ-LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164 (213)
T ss_pred CCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHH-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 709999998999-85999899999999999875992465099556-9999999999999987599989983887642989
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 988999999999986299489998
Q gi|254780648|r 285 DSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 285 ~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
...++.+.+.++.+..+..++.|+
T Consensus 165 ~r~~i~~~l~~~~~~~~~T~i~vT 188 (213)
T cd03301 165 LRVQMRAELKRLQQRLGTTTIYVT 188 (213)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 999999999999997499899999
No 421
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.96 E-value=0.015 Score=35.30 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=29.8
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 899999763011244216777530354101454012121100000010266329868
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
.+.|+++-=-=++|+|.--|||||||+.|+.- ..|.-|.+..++..
T Consensus 35 ~vsl~I~~GE~~~llGpSGsGKSTLlr~iaGl-----------~~p~sG~I~~~G~~ 80 (378)
T PRK09452 35 NLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-----------ETPDSGRIMLDGQD 80 (378)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEE
T ss_conf 62779999989999989997699999999769-----------99984699999999
No 422
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.91 E-value=0.025 Score=33.94 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=25.1
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 689999976301124421677753035410145
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
..+.|+++-=.=|||||.--||||||++.|++-
T Consensus 26 ~~is~~i~~Ge~vaiiG~sGsGKSTLl~ll~Gl 58 (269)
T PRK13648 26 KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 645899859989999999999799999999649
No 423
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.89 E-value=0.087 Score=30.64 Aligned_cols=67 Identities=27% Similarity=0.303 Sum_probs=38.8
Q ss_pred EEEEEEEEEEEECEEEEECCCCCCCEEEEEECC------CCCHHH-HHHHCCCEECCEEEE--ECCEEEEEECCCC
Q ss_conf 268999997630112442167775303541014------540121-211000000102663--2986899822642
Q gi|254780648|r 149 EKIIWLKLKLIADIGIIGLPNAGKSTFLASVTR------AKPKIA-DYPFTTLYPNLGIVK--EGYKEFILADIPG 215 (335)
Q Consensus 149 ~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~------ak~kIa-~ypFTT~~P~lGvv~--~~~~~~~i~D~PG 215 (335)
-..+.+++--=+=||+||.--|||||+|.-||+ .+.+|+ -.||--..-++-.+. ...++=..+|+|=
T Consensus 40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred HHEEEEECCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEEECHH
T ss_conf 5511453489868988758888603339897386036887587458685233799998878876322202562302
No 424
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.85 E-value=0.018 Score=34.74 Aligned_cols=142 Identities=20% Similarity=0.222 Sum_probs=62.1
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCH---H
Q ss_conf 9999976301124421677753035410145401212110000001026632986899822642124731167751---2
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIG---D 228 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG---~ 228 (335)
+.|+++-=-=+||+|.--||||||++.|++- +.|.-|.+..+...- +.=+|- ..+....+. .
T Consensus 23 vs~~i~~Gei~~LiGpNGaGKSTLlk~I~Gl-----------~~p~~G~I~~~~~~~-igyvpq---~~~~~~~~~~~~~ 87 (251)
T PRK09544 23 VSLELKPGKILTLLGPNGAGKSTLVRVVLGL-----------VAPDEGVIKRNGKLR-IGYVPQ---KLYLDTTLPLTVN 87 (251)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCCEEEECCCCE-EECCCH---HHHCCCCCHHHHH
T ss_conf 0789879979999989998899999999668-----------889860899999402-620437---7621876218999
Q ss_pred HHHH---HHHHHHHH--HHHCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCEEEEE----ECCCCCCHHHHHHHHHHHH
Q ss_conf 3443---33335788--75202222--110134666789987776675059889999----7465899889999999999
Q gi|254780648|r 229 RFLK---HTERTHVL--LHIVSALE--ENVQAAYQCILDELSAYNSELRKKIEIVGL----SQIDTVDSDTLARKKNELA 297 (335)
Q Consensus 229 ~FLr---hIer~~vL--l~VVD~s~--~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVl----NKiDl~~~e~~~~~~~~l~ 297 (335)
+|++ .+.+.++. +--++..+ +.+...+--=....-.....|..+|.++++ +=.|......+.+.++++.
T Consensus 88 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~LSGGq~QRv~iAraL~~~P~lLiLDEPTsgLD~~~~~~i~~li~~L~ 167 (251)
T PRK09544 88 RFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLR 167 (251)
T ss_pred HHHHCCCCCCHHHHHHHHHHHCCCHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98632766538999999987385224326544589999999999999974999899809864689999999999999999
Q ss_pred HHCCCCEEEEE
Q ss_conf 86299489998
Q gi|254780648|r 298 TQCGQVPFEFS 308 (335)
Q Consensus 298 ~~~~~~vi~IS 308 (335)
+..+..++.+|
T Consensus 168 ~e~g~til~vt 178 (251)
T PRK09544 168 RELDCAVLMVS 178 (251)
T ss_pred HHCCCEEEEEE
T ss_conf 83298999990
No 425
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.83 E-value=0.055 Score=31.86 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=31.2
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 899999763011244216777530354101454012121100000010266329868
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
.+.|+++-=-=+||+|.--||||||++.|++-- .|.-|.+..++..
T Consensus 17 ~isl~i~~GE~v~iiG~nGaGKSTLl~~i~Gll-----------~p~sG~I~i~G~~ 62 (233)
T PRK10771 17 RFTLTVERGEQVAILGPSGAGKSTLLNLIAGFL-----------TPASGSLLINGVD 62 (233)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-----------CCCCEEEEECCEE
T ss_conf 278898899899999999981999999996599-----------9985599999999
No 426
>TIGR00484 EF-G translation elongation factor G; InterPro: IPR004540 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF-G is a large, five-domain GTPase that promotes the directional movement of mRNA and tRNAs on the ribosome in a GTP-dependent manner. Unlike other GTPases, but by analogy to the myosin motor, EF-G performs its function of powering translocation in the GDP-bound form; that is, in a kinetically stable ribosome-EF-G(GDP) complex formed by GTP hydrolysis on the ribosome. The complex undergoes an extensive structural rearrangement, in particular affecting the small ribosomal subunit, which leads to mRNA-tRNA movement. Domain 4, which extends from the 'body' of the EF-G molecule much like a lever arm, appears to be essential for the structural transition to take place. In a hypothetical model, GTP hydrolysis induces a conformational change in the G domain of EF-G, which affects the interactions with neighbouring domains within EF-G. The resulting rearrangement of the domains relative to each other generates conformational strain in the ribosome to which EF-G is fixed. Because of structural features of the tRNA-ribosome complex, this conformational strain results in directional tRNA-mRNA movement. The functional parallels between EF-G and motor proteins suggest that EF-G differs from classical G-proteins in that it functions as a force-generating mechanochemical device rather than a conformational switch . Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. Escherichia coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis sp. (strain PCC 6803) has a few proteins more closely related to EF-G than to any other characterised protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=95.82 E-value=0.021 Score=34.40 Aligned_cols=129 Identities=25% Similarity=0.326 Sum_probs=72.1
Q ss_pred EEEEEECEEEEECCCCCCCEEEEEE---CCCCCHHHHHH---H-CCC-----EECCEE--------EEE------CCEEE
Q ss_conf 9976301124421677753035410---14540121211---0-000-----001026--------632------98689
Q gi|254780648|r 155 KLKLIADIGIIGLPNAGKSTFLASV---TRAKPKIADYP---F-TTL-----YPNLGI--------VKE------GYKEF 208 (335)
Q Consensus 155 elk~iaDVglVG~PNaGKSTLln~l---s~ak~kIa~yp---F-TT~-----~P~lGv--------v~~------~~~~~ 208 (335)
.|.-+-.+|+.--=-|||+|+--+| |+..-+|+.-. . .|. +.--|+ +.. ...++
T Consensus 6 ~~~~~RNiGI~AHIDaGKTT~~ERILFy~g~~HkIgE~~g~dG~a~MDwME~E~ERGITItSAAT~~~Wk~~~~~~~~~~ 85 (705)
T TIGR00484 6 DLEKLRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHGKDGAATMDWMEQEKERGITITSAATTVEWKGMAKQYDHRI 85 (705)
T ss_pred CHHHCCCCCEEEEECCCCCCCHHEEEECCCCCCCEEECCCCCCCEECCHHHHCCCCCEEEECHHCCHHHHHHHHCCCCEE
T ss_conf 52330554327863388732010100013750100000167885112312300358714210011010210100014037
Q ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHH----HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 98226421247311677512344333335----78875202222110134666789987776675059889999746589
Q gi|254780648|r 209 ILADIPGIIKNAHQGAGIGDRFLKHTERT----HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTV 284 (335)
Q Consensus 209 ~i~D~PGlIegA~~~~glG~~FLrhIer~----~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~ 284 (335)
-++||||=+ +|-=.+||+ |--+.|+|+..- ...+-+++.+.+.+|. -|+|+-+||||..
T Consensus 86 N~IDTPGHV-----------DFT~EVERSlRVLDGAv~V~~a~~G-V~pQ~~TVwRQa~~Y~-----VPRi~FVNK~Dk~ 148 (705)
T TIGR00484 86 NIIDTPGHV-----------DFTVEVERSLRVLDGAVAVLDAVGG-VQPQSETVWRQANKYE-----VPRIVFVNKMDKT 148 (705)
T ss_pred EEEECCCCE-----------EEEEEEEEHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHCC-----CCEEEEEECCCCC
T ss_conf 887378941-----------2578852012256456653330268-6641156776543268-----8628997155645
Q ss_pred CHHHHHHHHHHHHHHCC
Q ss_conf 98899999999998629
Q gi|254780648|r 285 DSDTLARKKNELATQCG 301 (335)
Q Consensus 285 ~~e~~~~~~~~l~~~~~ 301 (335)
-++- ......++..+.
T Consensus 149 GAnf-~~~~~~~~~rL~ 164 (705)
T TIGR00484 149 GANF-LRVVNQLKSRLG 164 (705)
T ss_pred CCCH-HHHHHHHHHHHC
T ss_conf 7878-899999998746
No 427
>KOG2655 consensus
Probab=95.82 E-value=0.017 Score=34.90 Aligned_cols=129 Identities=22% Similarity=0.296 Sum_probs=65.0
Q ss_pred EEEEECCCCCCCEEEEEECCC----CCHH--H-HHHHCCC--EECCEEEEECC--EEEEEECCCCCCCCCCCCCC-----
Q ss_conf 124421677753035410145----4012--1-2110000--00102663298--68998226421247311677-----
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRA----KPKI--A-DYPFTTL--YPNLGIVKEGY--KEFILADIPGIIKNAHQGAG----- 225 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~a----k~kI--a-~ypFTT~--~P~lGvv~~~~--~~~~i~D~PGlIegA~~~~g----- 225 (335)
+=++|---.|||||+|+|-.. .+.+ | .-|=.|+ ...--++..++ -+++++||||.-+. -.+..
T Consensus 24 lmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~-vdns~~w~pi 102 (366)
T KOG2655 24 LMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA-VDNSNCWRPI 102 (366)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCC-CCCCCCCHHH
T ss_conf 998558876388999888865325776667755676553113223237637974887678436998654-4651243235
Q ss_pred ---CHHH---HHH---HHH-------HHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCH
Q ss_conf ---5123---443---333-------35788752022221--10134666789987776675059-88999974658998
Q gi|254780648|r 226 ---IGDR---FLK---HTE-------RTHVLLHIVSALEE--NVQAAYQCILDELSAYNSELRKK-IEIVGLSQIDTVDS 286 (335)
Q Consensus 226 ---lG~~---FLr---hIe-------r~~vLl~VVD~s~~--d~~~~~~~I~~EL~~y~~~L~~K-p~IIVlNKiDl~~~ 286 (335)
+-.+ +|. .+. |..+.||.|..+.. .|++ ++. .. .+..+ ..|=|+-|+|.+.+
T Consensus 103 ~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D-i~~-Mk-------~l~~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655 103 VNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD-IEF-MK-------KLSKKVNLIPVIAKADTLTK 173 (366)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHH-HHH-HH-------HHHCCCCCCCEEECCCCCCH
T ss_conf 6789999999986023688655668844899998378888886866-999-99-------77325661031640566898
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 89999999999862
Q gi|254780648|r 287 DTLARKKNELATQC 300 (335)
Q Consensus 287 e~~~~~~~~l~~~~ 300 (335)
+++......+.+..
T Consensus 174 ~El~~~K~~I~~~i 187 (366)
T KOG2655 174 DELNQFKKRIRQDI 187 (366)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999998
No 428
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.81 E-value=0.03 Score=33.45 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=25.1
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 689999976301124421677753035410145
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
..+.|+++-=-=|||||.--||||||++.|++-
T Consensus 27 ~~isl~i~~Ge~vaivG~nGsGKSTLlk~l~Gl 59 (273)
T PRK13632 27 KNVSFTINEGEYVAILGHNGSGKSTISKILTGL 59 (273)
T ss_pred EEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 642889849989999999998699999999738
No 429
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=95.81 E-value=0.024 Score=33.99 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=23.2
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
+.|++.-=-=+||||.--||||||++.|++-
T Consensus 25 Vs~~v~~GEi~~iiG~nGaGKSTLl~~i~G~ 55 (258)
T PRK11701 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 2778879979999888998899999998567
No 430
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.80 E-value=0.024 Score=34.02 Aligned_cols=33 Identities=21% Similarity=0.161 Sum_probs=25.7
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 689999976301124421677753035410145
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
..+.|+++-=.=+||||.--||||||++.+.+-
T Consensus 24 ~~is~~i~~Ge~~aiiG~sGsGKSTL~~~l~Gl 56 (277)
T PRK13642 24 NGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred ECEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 430799889989999999996899999999638
No 431
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE; InterPro: IPR014137 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase..
Probab=95.79 E-value=0.017 Score=34.98 Aligned_cols=150 Identities=21% Similarity=0.262 Sum_probs=86.6
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECC-CCCHHHH-----HHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCC
Q ss_conf 999997630112442167775303541014-5401212-----1100000010266329868998226421247311677
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTR-AKPKIAD-----YPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAG 225 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~-ak~kIa~-----ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~g 225 (335)
|.|.++-=--|||.|.--+|||||=+-|-+ ++|.=++ -|-+-++|.=------+.|+||=|-||=+- +-.-.+
T Consensus 31 vsL~l~~Ge~~gLLG~SG~GKSTLArlLlGLe~P~~G~v~F~G~dl~~L~~~~~rafrR~vQlvFQD~~savN-Pr~tv~ 109 (267)
T TIGR02769 31 VSLSLEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGEVSFRGQDLSKLDRKQRRAFRRDVQLVFQDSPSAVN-PRKTVR 109 (267)
T ss_pred CCEEECCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCHHHCCHHHCCEEEEEEEEEEECCCCCCC-HHHHHH
T ss_conf 4323137750552367887377899998750788874047625645550811021112136789874743116-257899
Q ss_pred --CHHHHHHHHHH---------HHHHHHHCCCCCCC----HHH----HHHHHHHHHHHHHHHHCCCCEEEEE----ECCC
Q ss_conf --51234433333---------57887520222211----013----4666789987776675059889999----7465
Q gi|254780648|r 226 --IGDRFLKHTER---------THVLLHIVSALEEN----VQA----AYQCILDELSAYNSELRKKIEIVGL----SQID 282 (335)
Q Consensus 226 --lG~~FLrhIer---------~~vLl~VVD~s~~d----~~~----~~~~I~~EL~~y~~~L~~Kp~IIVl----NKiD 282 (335)
+| +=|||+++ +.-|+-.||..+++ |.+ +++-|+ + --.|+-+|.+||+ .-.|
T Consensus 110 ~ii~-EPLrhl~~L~~s~~~~r~~~LL~~v~L~~~~~~k~P~qlSGGQLQRin--i---ARALA~~PkLivLDEavSnLD 183 (267)
T TIGR02769 110 EIIG-EPLRHLTSLDESERKARIAELLELVGLRSEVADKLPRQLSGGQLQRIN--I---ARALAVKPKLIVLDEAVSNLD 183 (267)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHH--H---HHHHHCCCCEEEEHHHHHHHH
T ss_conf 9986-257766548899999999999986088967984287000574689999--9---999730897375322255767
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 89988999999999986299489998
Q gi|254780648|r 283 TVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 283 l~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
++..-.+.+.+++++..++..+++||
T Consensus 184 ~~lQ~~iL~lL~~L~q~~G~aylfit 209 (267)
T TIGR02769 184 LVLQAVILELLKKLQQEFGTAYLFIT 209 (267)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEHHH
T ss_conf 99999999999999870095541356
No 432
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.79 E-value=0.035 Score=33.07 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=32.9
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE
Q ss_conf 8999997630112442167775303541014540121211000000102663298689
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~ 208 (335)
.+.|+++-=-=++|||..-+|||||++.|++- ..|.-|.|..+++.+
T Consensus 20 ~is~~v~~Ge~~~iiGpSGsGKSTll~~i~Gl-----------~~p~~G~I~~~g~~i 66 (239)
T cd03296 20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGL-----------ERPDSGTILFGGEDA 66 (239)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEEC
T ss_conf 63869889989999999997799999999769-----------999863999999999
No 433
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.026 Score=33.86 Aligned_cols=46 Identities=26% Similarity=0.247 Sum_probs=30.4
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 899999763011244216777530354101454012121100000010266329868
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
.+.|++.-=.=+||||.--||||||++.|++- +.|.-|.+..++..
T Consensus 25 ~isl~I~~Ge~~~iiGpNGaGKSTLlk~i~Gl-----------l~p~~G~I~l~g~~ 70 (265)
T PRK10253 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL-----------MTPAHGHVWLDGEH 70 (265)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEE
T ss_conf 02889859979999999883999999999749-----------88885299999999
No 434
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.70 E-value=0.014 Score=35.52 Aligned_cols=47 Identities=21% Similarity=0.109 Sum_probs=31.8
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 6899999763011244216777530354101454012121100000010266329868
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
..+.|++.-=-=+||+|.--||||||++.|++-. .|.-|.|..++..
T Consensus 17 ~~vsl~i~~Gei~~iiG~nGaGKSTLl~~i~Gl~-----------~p~~G~I~~~g~~ 63 (205)
T cd03226 17 DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI-----------KESSGSILLNGKP 63 (205)
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-----------CCCCCEEEECCEE
T ss_conf 4037888699899998899998999999995685-----------7778738999999
No 435
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.70 E-value=0.033 Score=33.17 Aligned_cols=47 Identities=26% Similarity=0.203 Sum_probs=31.1
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE
Q ss_conf 8999997630112442167775303541014540121211000000102663298689
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~ 208 (335)
.+.|+++-=-=++|+|.--||||||++.|++- +.|.-|.+..++..+
T Consensus 25 ~is~~i~~Ge~~~i~G~sGsGKSTLlk~i~gl-----------~~p~~G~I~~~g~~i 71 (225)
T PRK10247 25 NINFSLRAGEFKLITGPSGCGKSTLLKIVASL-----------ISPTSGTLLFEGEDI 71 (225)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCCEEEECCEEC
T ss_conf 51799859969999999999999999999646-----------688876599999997
No 436
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.70 E-value=0.032 Score=33.31 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=31.0
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE
Q ss_conf 999997630112442167775303541014540121211000000102663298689
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~ 208 (335)
+.|+++-=-=+||+|.--||||||++.|++. ..|.-|.|..++..+
T Consensus 24 isl~i~~Gei~~liG~NGaGKSTLl~~i~G~-----------~~~~~G~I~~~G~~i 69 (237)
T PRK11614 24 VSLHINQGEIVTLIGANGAGKTTLLGTLCGD-----------PRATSGRIVFDGKDI 69 (237)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCEEEEECCEEC
T ss_conf 2789869979999879997599999999679-----------988962899999988
No 437
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.69 E-value=0.018 Score=34.80 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=24.4
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 89999976301124421677753035410145
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
.+.|+++-=-=|||||.--||||||++.+++-
T Consensus 25 ~isl~i~~GE~vaivG~nGsGKSTL~k~l~Gl 56 (279)
T PRK13635 25 DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 30768879989999999996599999999728
No 438
>KOG1534 consensus
Probab=95.69 E-value=0.0047 Score=38.33 Aligned_cols=121 Identities=23% Similarity=0.327 Sum_probs=68.9
Q ss_pred EEEECCCCCCCEEEEEE-------------CCCCC--HHHHHHHCCC----------------EECCEEE----------
Q ss_conf 24421677753035410-------------14540--1212110000----------------0010266----------
Q gi|254780648|r 163 GIIGLPNAGKSTFLASV-------------TRAKP--KIADYPFTTL----------------YPNLGIV---------- 201 (335)
Q Consensus 163 glVG~PNaGKSTLln~l-------------s~ak~--kIa~ypFTT~----------------~P~lGvv---------- 201 (335)
-..|...+||||+.+++ -|-.| ++.+||+|-- -||=|.+
T Consensus 7 lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~~Nl 86 (273)
T KOG1534 7 LVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLLENL 86 (273)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 98746788843078999999986285458862687888608962002887521888888863499865203899999778
Q ss_pred -----EEC--CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH---HHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHC
Q ss_conf -----329--8689982264212473116775123443333357---8875202222110134666789987776-6750
Q gi|254780648|r 202 -----KEG--YKEFILADIPGIIKNAHQGAGIGDRFLKHTERTH---VLLHIVSALEENVQAAYQCILDELSAYN-SELR 270 (335)
Q Consensus 202 -----~~~--~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~---vLl~VVD~s~~d~~~~~~~I~~EL~~y~-~~L~ 270 (335)
..+ +..+.+.|-||-||=-.. .-.-.++.+|+++-. -.+|++|.. =.++..+-+---|...+ .-.+
T Consensus 87 dwL~~~~Gd~eddylifDcPGQIELytH-~pVm~~iv~hl~~~~F~~c~Vylldsq--f~vD~~KfiSG~lsAlsAMi~l 163 (273)
T KOG1534 87 DWLEEEIGDVEDDYLIFDCPGQIELYTH-LPVMPQIVEHLKQWNFNVCVVYLLDSQ--FLVDSTKFISGCLSALSAMISL 163 (273)
T ss_pred HHHHHHCCCCCCCEEEEECCCEEEEEEC-CHHHHHHHHHHHCCCCCEEEEEEECCC--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8877540675677799847981677544-765899999984026744699996050--1111788999999999999973
Q ss_pred CCCEEEEEECCCCCCH
Q ss_conf 5988999974658998
Q gi|254780648|r 271 KKIEIVGLSQIDTVDS 286 (335)
Q Consensus 271 ~Kp~IIVlNKiDl~~~ 286 (335)
+-|.|=|++|+||+..
T Consensus 164 E~P~INvlsKMDLlk~ 179 (273)
T KOG1534 164 EVPHINVLSKMDLLKD 179 (273)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 6760224468788645
No 439
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.68 E-value=0.019 Score=34.66 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=23.8
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 689999976301124421677753035410145
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
..+.|+++-=-=|||||.--||||||++.|.+-
T Consensus 21 ~~vsl~i~~GE~vaivG~nGsGKSTL~~~l~Gl 53 (276)
T PRK13650 21 DDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL 53 (276)
T ss_pred ECCEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 875879989989999999998799999999738
No 440
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.65 E-value=0.017 Score=34.99 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=23.4
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECC
Q ss_conf 8999997630112442167775303541014
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTR 181 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~ 181 (335)
.+.|++.-=-=+||||.--||||||++.+++
T Consensus 25 ~vsl~I~~Ge~~aiiG~nGsGKSTLl~~l~G 55 (286)
T PRK13646 25 DVNTEFEQGKYYAIVGQTGSGKSTLIQNINA 55 (286)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 4177986998999999999819999999970
No 441
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=95.64 E-value=0.037 Score=32.91 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCCEEEEEECCC
Q ss_conf 1124421677753035410145
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~a 182 (335)
=+||+|.--||||||++.|+.-
T Consensus 33 i~gllGpNGAGKTTli~~l~Gl 54 (304)
T PRK13537 33 CFGLLGPNGAGKTTTLKMLLGL 54 (304)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999897299999999779
No 442
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.048 Score=32.24 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=30.7
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE
Q ss_conf 999997630112442167775303541014540121211000000102663298689
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~ 208 (335)
+.|++.-=-=+||+|.--||||||++.|++. +.|.-|.+..++..+
T Consensus 19 vsl~i~~Gei~gl~G~NGaGKSTLl~~i~Gl-----------~~p~~G~i~i~g~~~ 64 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGL-----------LKPDSGEIKVLGKDI 64 (173)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCCEEEECCEEC
T ss_conf 0878879939999878997999999999768-----------577878899999998
No 443
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=95.63 E-value=0.04 Score=32.69 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=19.1
Q ss_pred ECEEEEECCCCCCCEEEEEECCC
Q ss_conf 01124421677753035410145
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~a 182 (335)
-.-=|||.|++||+|||+=|++.
T Consensus 124 ~NTLiIsPPq~GKTTlLRDlaR~ 146 (282)
T TIGR02858 124 LNTLIISPPQCGKTTLLRDLARI 146 (282)
T ss_pred EEEEEECCCCCCCCCHHHHHHHH
T ss_conf 67888868898851048889888
No 444
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.62 E-value=0.038 Score=32.84 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.7
Q ss_pred ECEEEEECCCCCCCEEEEEECCC
Q ss_conf 01124421677753035410145
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~a 182 (335)
.=+||+|.--||||||++.|+.-
T Consensus 34 ei~gllGpNGAGKSTli~~l~Gl 56 (306)
T PRK13536 34 ECFGLLGPNGAGKSTIARMILGM 56 (306)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 69999999898099999999679
No 445
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.59 E-value=0.014 Score=35.50 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=21.6
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECC
Q ss_conf 68999997630112442167775303541014
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTR 181 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ 181 (335)
..+.|+..-=-=++|||..-+|||||++.|.+
T Consensus 45 ~dVsl~I~~GEi~~ivG~SGsGKSTLlr~i~g 76 (400)
T PRK10070 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNR 76 (400)
T ss_pred ECCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 74076887999999999998469999999975
No 446
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.58 E-value=0.042 Score=32.56 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=24.2
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCCC
Q ss_conf 899999763011244216777530354101454
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRAK 183 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak 183 (335)
.+.|+++-=.=+||+|.--||||||++.|++--
T Consensus 17 ~is~~i~~Ge~~~liGpNGaGKSTllk~i~Gl~ 49 (213)
T cd03235 17 DVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 027898599899999999986999999997687
No 447
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.58 E-value=0.017 Score=34.88 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=60.5
Q ss_pred ECEEEEECCCCCCCEEEEEECCC-CCHH-----HHHHHCCCEECCEEEEECCEEEEEECCCCCCC--CCCCCCCCHHHHH
Q ss_conf 01124421677753035410145-4012-----12110000001026632986899822642124--7311677512344
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRA-KPKI-----ADYPFTTLYPNLGIVKEGYKEFILADIPGIIK--NAHQGAGIGDRFL 231 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~a-k~kI-----a~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIe--gA~~~~glG~~FL 231 (335)
-=+||+|.--||||||++.|++- +|.- ..-|.+.....++ +++-| +.+.. ...++..+|.+-
T Consensus 39 Eiv~LiG~nGaGKSTLlr~i~Gl~~p~~G~I~~~~~~i~~~~~~i~--------~vfQ~-~~l~~~~tV~eni~~gl~~- 108 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLETPTAGDLLAGTAPLAEAQEDTR--------LMFQD-ARLLPWKKVIDNVGLGLKG- 108 (257)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHHHCEE--------EEECC-CCCCCCCCHHHHHHHHCCC-
T ss_conf 8999998998889999999965898888708989875544311007--------99325-6447677899998632141-
Q ss_pred HHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE----CCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 33333578875202222---1101346667899877766750598899997----4658998899999999998629948
Q gi|254780648|r 232 KHTERTHVLLHIVSALE---ENVQAAYQCILDELSAYNSELRKKIEIVGLS----QIDTVDSDTLARKKNELATQCGQVP 304 (335)
Q Consensus 232 rhIer~~vLl~VVD~s~---~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlN----KiDl~~~e~~~~~~~~l~~~~~~~v 304 (335)
..-++..-++-.+...+ ..| ..+--=....-.....|..+|.++++- =.|.....++.+.+.++.+..+..+
T Consensus 109 ~~~~~~~e~l~~vgL~~~~~~~p-~~LSGGqkQRvaiAraL~~~P~lLlLDEPtsgLD~~~~~~i~~ll~~L~~e~g~TI 187 (257)
T PRK11247 109 QWRDAALQALAAVGLADRANEWP-AALSGGQKQRVALARALIHRPRLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTV 187 (257)
T ss_pred CHHHHHHHHHHHCCCCHHHHCCH-HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 06999999999859913553694-44899999999999998459999998098765799999999999999999609899
Q ss_pred EEEE
Q ss_conf 9998
Q gi|254780648|r 305 FEFS 308 (335)
Q Consensus 305 i~IS 308 (335)
+.+|
T Consensus 188 i~vT 191 (257)
T PRK11247 188 LLVT 191 (257)
T ss_pred EEEC
T ss_conf 9988
No 448
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.56 E-value=0.044 Score=32.44 Aligned_cols=44 Identities=23% Similarity=0.233 Sum_probs=29.0
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE
Q ss_conf 9999976301124421677753035410145401212110000001026632986
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK 206 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~ 206 (335)
+.|++.-=.=+||||.--||||||++.|++- +.|.-|.|..++.
T Consensus 27 is~~i~~Gei~~iiGpnGsGKSTLlk~i~Gl-----------~~p~~G~I~~~G~ 70 (269)
T PRK11831 27 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ-----------IAPDHGEILFDGE 70 (269)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCCEEEECCE
T ss_conf 1668879989999939997599999999679-----------8889866999998
No 449
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.56 E-value=0.078 Score=30.95 Aligned_cols=47 Identities=26% Similarity=0.260 Sum_probs=33.3
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 6899999763011244216777530354101454012121100000010266329868
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
..+.|+++-=-=+||+|.--||||||++.+++- +.|.-|.+..++..
T Consensus 21 ~~isl~i~~Ge~~~iiG~sGsGKTTll~~i~Gl-----------~~p~~G~I~~~g~~ 67 (218)
T cd03255 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL-----------DRPTSGEVRVDGTD 67 (218)
T ss_pred ECEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEE
T ss_conf 562899869989999999998699999999669-----------99996499999999
No 450
>KOG2749 consensus
Probab=95.55 E-value=0.0086 Score=36.73 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=28.8
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHH-HCCCEECCEEE
Q ss_conf 0112442167775303541014540121211-00000010266
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYP-FTTLYPNLGIV 201 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~yp-FTT~~P~lGvv 201 (335)
.-|-+||..++|||||...|.|--.|.+-.| |+-++|.-|.+
T Consensus 104 Prv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~si 146 (415)
T KOG2749 104 PRVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSI 146 (415)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCE
T ss_conf 7799989876566789999999998717865389747999724
No 451
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.52 E-value=0.036 Score=32.95 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=29.8
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 99999763011244216777530354101454012121100000010266329868
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
+.|+++-=-=+||+|.--||||||++.|++.. .|.-|.|..++..
T Consensus 19 vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~-----------~p~~G~I~~~G~~ 63 (222)
T cd03224 19 VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL-----------PPRSGSIRFDGRD 63 (222)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-----------CCCCEEEEECCEE
T ss_conf 08998899899999999985999999997798-----------8996099999999
No 452
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.50 E-value=0.13 Score=29.68 Aligned_cols=32 Identities=28% Similarity=0.280 Sum_probs=23.7
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 89999976301124421677753035410145
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
.+.|+++-=-=+||+|.--||||||++.|++-
T Consensus 20 ~is~~i~~Gei~~llG~NGaGKSTLl~~i~Gl 51 (220)
T cd03263 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 40889849959999989997399999999669
No 453
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.47 E-value=0.05 Score=32.11 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=29.5
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE
Q ss_conf 999997630112442167775303541014540121211000000102663298689
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~ 208 (335)
+.|++.-=-=+||+|.--||||||++.|+... .|.-|.+..++..+
T Consensus 19 vsl~i~~Gei~gliG~nGaGKSTL~~~i~Gl~-----------~p~~G~I~~~G~~i 64 (236)
T cd03219 19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-----------RPTSGSVLFDGEDI 64 (236)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-----------CCCCEEEEECCEEC
T ss_conf 38998899899999899973999999996798-----------78831899999966
No 454
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.02 Score=34.54 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCCCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE-----------------
Q ss_conf 775302689999976301124421677753035410145401212110000001026632986-----------------
Q gi|254780648|r 144 GILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK----------------- 206 (335)
Q Consensus 144 G~~G~~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~----------------- 206 (335)
|..---..+.|++.-=-=++|||..-+|||||++.|.+- ..|.-|.|..++.
T Consensus 35 G~~~aL~~vsl~i~~GE~~~ivG~SGsGKSTLLr~i~GL-----------~~p~~G~I~~~G~~i~~~~~~~l~~~r~~~ 103 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL-----------IEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred CCEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEECCCCCHHHHHHHHCCC
T ss_conf 992797774758889999999989984899999999759-----------999975999999999999989998852564
Q ss_pred -EEEEECCCCCCCC--CCCCCCCHHHHHHHH------HHHHHHHHHCCCCCCCHHHHHHHHHHHHH-------HHHHHHC
Q ss_conf -8998226421247--311677512344333------33578875202222110134666789987-------7766750
Q gi|254780648|r 207 -EFILADIPGIIKN--AHQGAGIGDRFLKHT------ERTHVLLHIVSALEENVQAAYQCILDELS-------AYNSELR 270 (335)
Q Consensus 207 -~~~i~D~PGlIeg--A~~~~glG~~FLrhI------er~~vLl~VVD~s~~d~~~~~~~I~~EL~-------~y~~~L~ 270 (335)
.+++-| +.|... ..+|..++.+. +++ +|+.-++-.|...+ ..+ ..-.||. .....|.
T Consensus 104 igmVFQ~-~aL~P~ltV~eNV~~~L~~-~~~~~~e~~~rv~e~L~~vgL~~--~~~---~~P~qLSGGq~QRVaIARALa 176 (269)
T cd03294 104 ISMVFQS-FALLPHRTVLENVAFGLEV-QGVPRAEREERAAEALELVGLEG--WEH---KYPDELSGGMQQRVGLARALA 176 (269)
T ss_pred EEEEEEC-CCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCHH--HHH---CCHHHHCHHHHHHHHHHHHHH
T ss_conf 6999615-7547678799998688885-28997899999999998679867--775---696784948888999999986
Q ss_pred CCCEEEEEE----CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 598899997----46589988999999999986299489998
Q gi|254780648|r 271 KKIEIVGLS----QIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 271 ~Kp~IIVlN----KiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
.+|.++++- -.|-.-..++.+.+.++.+..+..++.|+
T Consensus 177 ~~P~iLLlDEPtsaLD~~~~~~i~~~l~~l~~~~~~T~i~VT 218 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFIT 218 (269)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 399899975875425999999999999999997499999999
No 455
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=95.42 E-value=0.056 Score=31.80 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=29.7
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE
Q ss_conf 999997630112442167775303541014540121211000000102663298689
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~ 208 (335)
+.|++.-=-=+||+|.--||||||++.|++-. .|.-|.+..++..+
T Consensus 22 vsl~i~~Gei~~liGpNGaGKSTLl~~i~Gl~-----------~~~~G~I~i~g~~i 67 (241)
T PRK10895 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV-----------PRDAGNIIIDDEDI 67 (241)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-----------CCCCCEEEECCEEC
T ss_conf 07898399799998899986999999996788-----------88876277634523
No 456
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.038 Score=32.82 Aligned_cols=143 Identities=17% Similarity=0.256 Sum_probs=68.2
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE--------------EEECCCC
Q ss_conf 68999997630112442167775303541014540121211000000102663298689--------------9822642
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF--------------ILADIPG 215 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~--------------~i~D~PG 215 (335)
..+.|+++-=.=++|||..-+|||||++.|++- ..|.-|.+..++..+ ++-|. .
T Consensus 18 ~~vsl~i~~Ge~~~ilGpSG~GKSTllr~i~gl-----------~~p~~G~I~i~g~~i~~~~~~~lrr~ig~vfQ~~-~ 85 (242)
T cd03295 18 NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL-----------IEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQI-G 85 (242)
T ss_pred EEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEECCCCCHHHHHCCCEEEECCC-C
T ss_conf 302768869989999999995699999999759-----------9998159999999999999789738867991799-7
Q ss_pred CCCC--CCCCCCCHHHHHHH------HHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-------HHHHHHCCCCEEEEE--
Q ss_conf 1247--31167751234433------333578875202222110134666789987-------776675059889999--
Q gi|254780648|r 216 IIKN--AHQGAGIGDRFLKH------TERTHVLLHIVSALEENVQAAYQCILDELS-------AYNSELRKKIEIVGL-- 278 (335)
Q Consensus 216 lIeg--A~~~~glG~~FLrh------Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~-------~y~~~L~~Kp~IIVl-- 278 (335)
|... ..++...+.++ ++ -+|+.-++-.++.......+ ..-+||. .....|...|.++++
T Consensus 86 Lfp~ltV~eNi~~~~~~-~~~~~~~~~~rv~ell~~v~L~~~~~~~---~~p~~LSGGqkQRvaiARAl~~~P~ilLlDE 161 (242)
T cd03295 86 LFPHMTVEENIALVPKL-LKWPKEKIRERADELLALVGLDPAEFAD---RYPHELSGGQQQRVGVARALAADPPLLLMDE 161 (242)
T ss_pred CCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCCHHHCC---CCHHHCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 58888299999999997-5999999999999999874999301100---7956689999999999999962999999818
Q ss_pred --ECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf --746589988999999999986299489998
Q gi|254780648|r 279 --SQIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 279 --NKiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
.-.|-...+++.+.+.++.+..+..++.|+
T Consensus 162 P~saLD~~~~~~i~~~l~~l~~~~~~T~i~vT 193 (242)
T cd03295 162 PFGALDPITRDQLQEEFKRLQQELGKTIVFVT 193 (242)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 76546989999999999999997599999999
No 457
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=95.41 E-value=0.0045 Score=38.46 Aligned_cols=38 Identities=34% Similarity=0.477 Sum_probs=26.1
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE
Q ss_conf 0112442167775303541014540121211000000102663298689
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~ 208 (335)
--|||+|..-||||||||-|.+= +.|.-|-+..++...
T Consensus 25 e~VAi~GpSGAGKSTLLnLiAGF-----------~~PasG~i~~nd~~~ 62 (213)
T TIGR01277 25 ERVAILGPSGAGKSTLLNLIAGF-----------LEPASGEIKVNDKDH 62 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-----------CCCCCEEEEECCCCC
T ss_conf 76888758986278898778640-----------477640588778012
No 458
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.38 E-value=0.018 Score=34.74 Aligned_cols=31 Identities=32% Similarity=0.397 Sum_probs=22.7
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
+.|+++-=-=+||||.--||||||++.+..-
T Consensus 24 Vsl~I~~Gei~giIG~SGaGKSTLlr~i~gL 54 (343)
T PRK11153 24 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 1889989989999999998699999999659
No 459
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.38 E-value=0.074 Score=31.06 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=25.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 1244216777530354101454012121100000010266329868
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
+||||.--|||||||+.|++- +.|.-|.+..+...
T Consensus 28 v~liGpNGaGKSTLlk~l~Gl-----------l~p~~G~I~~~g~~ 62 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGV-----------LKPDEGDIEIELDT 62 (246)
T ss_pred EEEECCCCCHHHHHHHHHHCC-----------CCCCCCEEEECCCC
T ss_conf 999979997699999999778-----------78886079989820
No 460
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.35 E-value=0.057 Score=31.78 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=22.9
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
+.|++.-=-=+||||.--||||||++.|++-
T Consensus 30 vsl~i~~Ge~~~liG~NGaGKSTLl~~l~gl 60 (265)
T PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 0889879989999999998099999999568
No 461
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.33 E-value=0.078 Score=30.94 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.0
Q ss_pred CEEEEECCCCCCCEEEEEECC
Q ss_conf 112442167775303541014
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTR 181 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ 181 (335)
=|+|||..-+|||||||.++.
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999989997889999999968
No 462
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.32 E-value=0.15 Score=29.25 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=17.4
Q ss_pred CEEEEECCCCCCCEEEEEEC
Q ss_conf 11244216777530354101
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVT 180 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls 180 (335)
=|+|||..-|||+|-|.+|.
T Consensus 205 vi~LVGPTGVGKTTTlAKLA 224 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLA 224 (407)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79998998875887999999
No 463
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.32 E-value=0.18 Score=28.79 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=32.7
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEE
Q ss_conf 9999976301124421677753035410145401212110000001026632986899
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFI 209 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~ 209 (335)
+.|+++-=.-||+||..-+|||||++.+++- ..|.-|.+..|+..+.
T Consensus 484 vsl~i~~Ge~vaIvG~sGsGKSTL~kll~Gl-----------~~p~~G~i~idg~~~~ 530 (694)
T TIGR03375 484 VSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL-----------YQPTEGSVLLDGVDIR 530 (694)
T ss_pred HHHEECCCCEEEEEECCCCCHHHHHHHHCCC-----------CCCCCCEEEECCEECC
T ss_conf 3118879978999805898788999985567-----------5899887998985425
No 464
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=95.32 E-value=0.013 Score=35.62 Aligned_cols=48 Identities=21% Similarity=0.035 Sum_probs=32.8
Q ss_pred CCCEEEEEECCCCCC-----HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
Q ss_conf 598899997465899-----8899999999998629948999888788999999
Q gi|254780648|r 271 KKIEIVGLSQIDTVD-----SDTLARKKNELATQCGQVPFEFSSITGHGIPQIL 319 (335)
Q Consensus 271 ~Kp~IIVlNKiDl~~-----~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~ 319 (335)
..|.+++-||+|++. .+...+. .++.+..+...+..||+++++++...
T Consensus 66 ~~~~~l~gnk~d~~~~~~~~k~~~~~~-~~~a~~~~l~~~etsak~~~nv~~~~ 118 (124)
T smart00010 66 NVPEVLVGNKSDLPILVGGNRDVLEEE-RQVATEEGLEFAETSAKTPEEGELAA 118 (124)
T ss_pred CCEEEHHCCCCCHHHHHCCCCCCCHHH-HHHHHHCCCEEEECCCCCCCHHHHHH
T ss_conf 734111138853777734541134889-99999879989987899851699999
No 465
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.31 E-value=0.0027 Score=39.80 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=16.0
Q ss_pred EEECCCCCCCEEEEEECCCC
Q ss_conf 44216777530354101454
Q gi|254780648|r 164 IIGLPNAGKSTFLASVTRAK 183 (335)
Q Consensus 164 lVG~PNaGKSTLln~ls~ak 183 (335)
+-||--|||+||||.+-+..
T Consensus 5 itGFLGaGKTTll~~lL~~~ 24 (158)
T cd03112 5 LTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEECCCCCHHHHHHHHHHCC
T ss_conf 98488899999999998478
No 466
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.30 E-value=0.03 Score=33.47 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=24.1
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 89999976301124421677753035410145
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
.+.|++.-=-=+||||.--||||||++.+++-
T Consensus 25 ~Vsl~i~~Ge~~aiiG~nGsGKSTLl~~l~Gl 56 (280)
T PRK13649 25 DVNLDILDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 02689879989999959998699999999669
No 467
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.28 E-value=0.12 Score=29.90 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=19.9
Q ss_pred ECEEEEECCCCCCCEEEEEECCC
Q ss_conf 01124421677753035410145
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~a 182 (335)
.=++|+|.--+||||||+++++-
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~~~ 51 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999899888999999998656
No 468
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.27 E-value=0.073 Score=31.10 Aligned_cols=119 Identities=24% Similarity=0.323 Sum_probs=60.9
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCC---CCHHHHHHHHHHH
Q ss_conf 1124421677753035410145401212110000001026632986899822642124731167---7512344333335
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGA---GIGDRFLKHTERT 237 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~---glG~~FLrhIer~ 237 (335)
..-++|.|++||+|||+-|++-- ++ |.-..-.++..++|.--=|.++..+. ++|. |
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~---s~----------g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~-------R- 197 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLL---SD----------GINQFLPKKVGIIDERSEIAGCLNGVPQHGRGR-------R- 197 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---HC----------CCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHH-------H-
T ss_conf 46996599887077999999986---31----------511267732899715004303435886032322-------1-
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 78875202222110134666789987776675059889999746589988999999999986299489998887889999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
+|+.+.+|-. +-+..-+++ .-|.++++--+-.. ++ ...+......-+-.|-..+|.++++
T Consensus 198 ------~dVld~cpk~--~gmmmaIrs------m~PEViIvDEIGt~--~d----~~A~~ta~~~GVkli~TaHG~~ied 257 (308)
T COG3854 198 ------MDVLDPCPKA--EGMMMAIRS------MSPEVIIVDEIGTE--ED----ALAILTALHAGVKLITTAHGNGIED 257 (308)
T ss_pred ------HHHCCCCHHH--HHHHHHHHH------CCCCEEEEECCCCH--HH----HHHHHHHHHCCCEEEEEECCCCHHH
T ss_conf ------0104656178--889999995------49957998343647--77----9999999854858999504411777
Q ss_pred HHH
Q ss_conf 999
Q gi|254780648|r 318 ILE 320 (335)
Q Consensus 318 L~~ 320 (335)
|.+
T Consensus 258 l~k 260 (308)
T COG3854 258 LIK 260 (308)
T ss_pred HHC
T ss_conf 650
No 469
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.26 E-value=0.044 Score=32.44 Aligned_cols=47 Identities=30% Similarity=0.357 Sum_probs=31.2
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 6899999763011244216777530354101454012121100000010266329868
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
..+.|++.-=.=+||||.--||||||++.|++- +.|.-|.|..+++.
T Consensus 18 ~~vsl~i~~Gei~~liGpNGaGKSTLlk~l~Gl-----------~~p~~G~I~~~G~~ 64 (271)
T PRK13638 18 KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL-----------LRPQKGAVLWQGKP 64 (271)
T ss_pred ECCEEEECCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCEEEEECCEE
T ss_conf 641879838979999999998099999999668-----------88886079999999
No 470
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.25 E-value=0.056 Score=31.81 Aligned_cols=33 Identities=30% Similarity=0.254 Sum_probs=26.0
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 689999976301124421677753035410145
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
..+.|++.-=-=+||+|.--||||||++.|++-
T Consensus 18 ~~vsl~i~~Gei~~iiG~nGaGKSTLlk~i~Gl 50 (211)
T cd03225 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 531788849979999889999899999999646
No 471
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.25 E-value=0.049 Score=32.18 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=23.1
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
+.|++.-=-=++|+|..-||||||++.|++-
T Consensus 21 vsl~i~~GE~~~llGpSGsGKSTLlr~iaGL 51 (352)
T PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGL 51 (352)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 3769999989999999984699999999769
No 472
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.044 Score=32.44 Aligned_cols=140 Identities=23% Similarity=0.307 Sum_probs=62.4
Q ss_pred EEEEECCCCCCCEEEEEECCC-----CCHHH----------H------------HHHCCCEE---CCEEEEECCEEEEEE
Q ss_conf 124421677753035410145-----40121----------2------------11000000---102663298689982
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRA-----KPKIA----------D------------YPFTTLYP---NLGIVKEGYKEFILA 211 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~a-----k~kIa----------~------------ypFTT~~P---~lGvv~~~~~~~~i~ 211 (335)
|+|||.+-|||+|-+.+|... +-||| . -||-...- -.-.+...+..++++
T Consensus 226 i~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~al~~~~~DlILI 305 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILI 305 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCEEEE
T ss_conf 99989999888999999999999974992799952665377999999999985994599518999999998569999999
Q ss_pred CCCCCCCCCCCCCC-C--HHHHHHHH-HHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH
Q ss_conf 26421247311677-5--12344333-3357887-520222211013466678998777667505988999974658998
Q gi|254780648|r 212 DIPGIIKNAHQGAG-I--GDRFLKHT-ERTHVLL-HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS 286 (335)
Q Consensus 212 D~PGlIegA~~~~g-l--G~~FLrhI-er~~vLl-~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~ 286 (335)
||+|. .|.+.- + -..||.-+ ++..+=. .|++++.. ++.+.+-++.|+. . ...=++++|.|-...
T Consensus 306 DTAGr---S~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk-----~~dl~~ii~~f~~--l-~~~~lIfTKLDET~s 374 (432)
T PRK12724 306 DTAGY---SHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS-----YHHTLTVLKAYES--L-NYRRILLTKLDEADF 374 (432)
T ss_pred ECCCC---CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-----HHHHHHHHHHHCC--C-CCCEEEEEECCCCCC
T ss_conf 29998---97899999999999986366788517999978899-----8999999998426--9-998499971227798
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 8999999999986299489998887889999
Q gi|254780648|r 287 DTLARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 287 e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
.-.+++ +....+.++-+++ +|++|.+
T Consensus 375 --~G~iln-i~~~~~~PisYiT--~GQ~VPd 400 (432)
T PRK12724 375 --LGSFLE-LADTYSKSFTYLS--VGQEVPF 400 (432)
T ss_pred --CCHHHH-HHHHHCCCEEEEE--CCCCCCC
T ss_conf --669999-9999889869980--8997971
No 473
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.062 Score=31.53 Aligned_cols=140 Identities=19% Similarity=0.201 Sum_probs=64.8
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE-----------------EEEECCC
Q ss_conf 99999763011244216777530354101454012121100000010266329868-----------------9982264
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE-----------------FILADIP 214 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~-----------------~~i~D~P 214 (335)
+.|+++-=-=++|||..-||||||++.+.+- ..|.-|.+..++.. +++=| |
T Consensus 19 isl~i~~Ge~~~iiG~SGsGKSTll~~i~gL-----------~~p~~G~I~~~g~~i~~~~~~~~~~~r~~ig~vfQ~-~ 86 (235)
T cd03261 19 VDLDVRRGEILAIIGPSGSGKSTLLRLIVGL-----------LRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQS-G 86 (235)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCCEEEECCEECCCCCHHHHHHHHCCEEEEECC-C
T ss_conf 0648879989999999997299999999759-----------998985899999999989988999975782997049-8
Q ss_pred CCCCC--CCCCCCCHHHHHHH------HHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-------HHHHHHCCCCEEEEEE
Q ss_conf 21247--31167751234433------333578875202222110134666789987-------7766750598899997
Q gi|254780648|r 215 GIIKN--AHQGAGIGDRFLKH------TERTHVLLHIVSALEENVQAAYQCILDELS-------AYNSELRKKIEIVGLS 279 (335)
Q Consensus 215 GlIeg--A~~~~glG~~FLrh------Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~-------~y~~~L~~Kp~IIVlN 279 (335)
.|... +.++..++.+-..+ -+|+.-++-.|...+. .. ..-.||. ..-..|..+|.++++-
T Consensus 87 ~Lf~~lTv~eNv~~~l~~~~~~~~~~~~~r~~~~L~~vgL~~~--~~---~~p~~LSGGq~QRvaIARALv~~P~illlD 161 (235)
T cd03261 87 ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA--ED---LYPAELSGGMKKRVALARALALDPELLLYD 161 (235)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH--HH---CCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 6589996999999999995799999999999999986799257--64---784106999999999999985489989980
Q ss_pred ----CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf ----46589988999999999986299489998
Q gi|254780648|r 280 ----QIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 280 ----KiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
=.|-....++.+.++++.+..+..++.||
T Consensus 162 EPts~LDp~~~~~i~~li~~l~~~~g~T~i~vT 194 (235)
T cd03261 162 EPTAGLDPIASGVIDDLIRSLKKELGLTSIMVT 194 (235)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 886647989999999999999997299999989
No 474
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=95.21 E-value=0.12 Score=29.71 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=26.7
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCCC
Q ss_conf 6899999763011244216777530354101454
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAK 183 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak 183 (335)
..+.|+++-=-=+||+|.-.||||||++.|++-.
T Consensus 280 ~~vsf~v~~GEi~gl~G~nGsGKsTL~~~l~Gl~ 313 (510)
T PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 4335787488189997688862889999981988
No 475
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.19 E-value=0.089 Score=30.60 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=23.0
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECC
Q ss_conf 999997630112442167775303541014
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTR 181 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ 181 (335)
+.|+++-=-=|+++|..-+|||||||-++.
T Consensus 24 v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 24 VNLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 258874998999989999989999999964
No 476
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.18 E-value=0.087 Score=30.66 Aligned_cols=31 Identities=32% Similarity=0.308 Sum_probs=23.5
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECC
Q ss_conf 8999997630112442167775303541014
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTR 181 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~ 181 (335)
.+.|.+.-=.-++|||.=-||||||+.++-+
T Consensus 22 ~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 22 DISLSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 5389974896899999988888999999967
No 477
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.16 E-value=0.061 Score=31.59 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=23.9
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 89999976301124421677753035410145
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
.+.|+++-=-=+||||.--||||||++.|++-
T Consensus 24 ~isl~I~~Ge~~aiiG~NGaGKSTLl~~i~Gl 55 (285)
T PRK13636 24 GININIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (285)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 13789879989999999998099999999659
No 478
>PRK10908 cell division protein FtsE; Provisional
Probab=95.14 E-value=0.12 Score=29.91 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=25.2
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 689999976301124421677753035410145
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
..+.|+++-=.=+||+|.--||||||++.+++-
T Consensus 19 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 51 (222)
T PRK10908 19 QGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred ECCEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 643879969989999999980799999999659
No 479
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.12 E-value=0.04 Score=32.73 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=29.2
Q ss_pred EEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 9999763011244216777530354101454012121100000010266329868
Q gi|254780648|r 153 WLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 153 ~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
.|+++-=.=++|+|.--||||||++.|++- ..|.-|.|..++..
T Consensus 39 sl~I~~GE~~~llGpsGsGKSTllr~i~Gl-----------~~p~~G~I~i~G~d 82 (377)
T PRK11607 39 SLTIYKGEIFALLGASGCGKSTLLRMLAGF-----------EQPSAGQIMLDGVD 82 (377)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEE
T ss_conf 879999989999999984899999999769-----------99986599999999
No 480
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.11 E-value=0.17 Score=28.91 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 6301124421677753035410145
Q gi|254780648|r 158 LIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 158 ~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
-=.-|||||.--+||||||+.|+..
T Consensus 347 ~gdrIaiiG~NG~GKSTLlk~l~g~ 371 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGE 371 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8988999899987789999998521
No 481
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.11 E-value=0.019 Score=34.65 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=22.4
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECC
Q ss_conf 999997630112442167775303541014
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTR 181 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ 181 (335)
+.|++.-=-=++|+|..-+||||||+.++.
T Consensus 17 vsl~i~~Ge~~~i~GpSGsGKSTLL~~i~g 46 (206)
T TIGR03608 17 LNLTIEKGKMVAIVGESGSGKSTLLNIIGL 46 (206)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 077986998999987999709999999975
No 482
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.09 E-value=0.053 Score=31.95 Aligned_cols=31 Identities=32% Similarity=0.262 Sum_probs=23.0
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
+.|++.-=-=++|+|..-||||||++.|++-
T Consensus 23 vsl~i~~Ge~~~llGpsG~GKTTllr~iaGl 53 (358)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGL 53 (358)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 2779889989999999863699999999769
No 483
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.04 E-value=0.28 Score=27.60 Aligned_cols=47 Identities=28% Similarity=0.331 Sum_probs=34.5
Q ss_pred EEEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE
Q ss_conf 2689999976301124421677753035410145401212110000001026632986
Q gi|254780648|r 149 EKIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK 206 (335)
Q Consensus 149 ~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~ 206 (335)
=..+.|+++-=--|||||..-||||||++.|.+- ..|.-|.+..++.
T Consensus 53 Lk~Isf~I~~Ge~vaIVG~sGSGKSTLl~lL~gl-----------~~p~~G~I~~~g~ 99 (282)
T cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE-----------LEPSEGKIKHSGR 99 (282)
T ss_pred EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCCEEEECCE
T ss_conf 4164899849999999999998199999999578-----------7278658999999
No 484
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.04 E-value=0.28 Score=27.59 Aligned_cols=47 Identities=26% Similarity=0.260 Sum_probs=33.6
Q ss_pred EEEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE
Q ss_conf 2689999976301124421677753035410145401212110000001026632986
Q gi|254780648|r 149 EKIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK 206 (335)
Q Consensus 149 ~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~ 206 (335)
=..+.|+++-=.=|||||..-+|||||++.+.+- ..|.-|.|..++.
T Consensus 20 L~~isl~i~~G~~v~ivG~sGsGKSTLl~ll~gl-----------~~p~~G~I~i~g~ 66 (220)
T cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL-----------YKPTSGSVLLDGT 66 (220)
T ss_pred EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCCEEEECCE
T ss_conf 5345999879999999999998599999999672-----------5478658999999
No 485
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.02 E-value=0.0041 Score=38.70 Aligned_cols=41 Identities=32% Similarity=0.418 Sum_probs=32.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHH-HHHHCCCEECCEEEE
Q ss_conf 12442167775303541014540121-211000000102663
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIA-DYPFTTLYPNLGIVK 202 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa-~ypFTT~~P~lGvv~ 202 (335)
|.|+|.+.|||+||++.|....|.+. .-+.||+.|--|-+.
T Consensus 4 ivl~GpsG~GK~tl~~~l~~~~~~~~~~vs~TTR~~R~gE~d 45 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVD 45 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 999899988999999999976899448870446897998778
No 486
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.02 E-value=0.0094 Score=36.52 Aligned_cols=19 Identities=37% Similarity=0.628 Sum_probs=16.7
Q ss_pred EEEEECCCCCCCEEEEEEC
Q ss_conf 1244216777530354101
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVT 180 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls 180 (335)
|+|||.+-|||+|.+.+|.
T Consensus 197 i~lvGPTGVGKTTTiAKLA 215 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9997788875788999999
No 487
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.99 E-value=0.092 Score=30.50 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=32.2
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE
Q ss_conf 8999997630112442167775303541014540121211000000102663298689
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~ 208 (335)
.+.|++.-=-=+||+|.--||||||++.+++-. .|.-|.|..++..+
T Consensus 23 dIsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~-----------~p~~G~I~~~g~~i 69 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLL-----------KPTSGSIIFDGKDL 69 (228)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-----------CCCCCEEEECCEEC
T ss_conf 607898699899999999986999999997289-----------87886699899646
No 488
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.99 E-value=0.25 Score=27.86 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=19.9
Q ss_pred ECEEEEECCCCCCCEEEEEECCC
Q ss_conf 01124421677753035410145
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~a 182 (335)
.=+||+|.--||||||++.+++-
T Consensus 29 ei~gllGpNGAGKTTl~~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 19999999998199999999679
No 489
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.98 E-value=0.043 Score=32.53 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=29.1
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 99999763011244216777530354101454012121100000010266329868
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
+.|++.-=-=++|+|..-+||||||+.|..- ..|.-|.+..+++.
T Consensus 25 vsl~i~~Ge~~~llGpSG~GKTTlLr~iaGl-----------~~p~~G~I~~~g~~ 69 (351)
T PRK11432 25 LDLTIKQGTMVTLLGPSGCGKTTVLRLVAGL-----------EKPTSGQIFIDGED 69 (351)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEE
T ss_conf 5749889989999999964999999999769-----------99883699999999
No 490
>KOG3887 consensus
Probab=94.96 E-value=0.096 Score=30.39 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=62.6
Q ss_pred EEEEECCCCCCCEEEEEECCC-CCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCC--CCCCCCCHHHHHHHHHHHH
Q ss_conf 124421677753035410145-4012121100000010266329868998226421247--3116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRA-KPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKN--AHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~a-k~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIeg--A~~~~glG~~FLrhIer~~ 238 (335)
|-|.|..-+||||+-..+-.. .|.--=|-=.|-.|..-.+....-.|.++|.||-+.- ++ ..+-+-...|-
T Consensus 30 ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s------~D~e~iF~~~g 103 (347)
T KOG3887 30 ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPS------FDYEMIFRGVG 103 (347)
T ss_pred EEEEEECCCCCCHHHHEEEECCCCCCEEEEECCCCCCHHHHHHHHCCEEEEECCCCCCCCCCC------CCHHHHHHCCC
T ss_conf 899730104732003112332698743676425753376653320343775158865667876------58899874147
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHH-HH--HHHHCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 8875202222110134666789987-77--66750598899997465899889999999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELS-AY--NSELRKKIEIVGLSQIDTVDSDTLARKKN 294 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~-~y--~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~ 294 (335)
+|+||||+-++ ..+.+..+..-.. .| ++ +-..=+.+-|+|-+..+-..+-.+
T Consensus 104 ALifvIDaQdd-y~eala~L~~~v~raykvNp---~in~EVfiHKvDGLsdd~kietqr 158 (347)
T KOG3887 104 ALIFVIDAQDD-YMEALARLHMTVERAYKVNP---NINFEVFIHKVDGLSDDFKIETQR 158 (347)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHHHEEECCC---CCEEEEEEEECCCCCHHHHHHHHH
T ss_conf 49999936588-99999999987653055179---844999997346775454234677
No 491
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.93 E-value=0.048 Score=32.19 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=23.2
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 89999976301124421677753035410145
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
.+.|+++-=-=|||+|.--||||||++.+++-
T Consensus 26 ~vsl~I~~Ge~vaiiG~nGsGKSTL~~~l~Gl 57 (283)
T PRK13640 26 DVSFSIPRGSWTALIGHNGSGKSTISKLINGL 57 (283)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 71869989999999999998799999999640
No 492
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.91 E-value=0.11 Score=29.98 Aligned_cols=84 Identities=21% Similarity=0.244 Sum_probs=48.8
Q ss_pred EECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 32986899822642124731167751234433333578875202222110134666789987776675059889999746
Q gi|254780648|r 202 KEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQI 281 (335)
Q Consensus 202 ~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKi 281 (335)
..+.++++++|+--=|| |-++| -++.+|+++.|+|.|-+.... .+. .++...++.=|+.++|+||+
T Consensus 130 ~~~~~e~VivDtEAGiE--HfgRg-------~~~~vD~vivVvDpS~~sl~t-aer----i~~L~~elg~k~i~~V~NKv 195 (255)
T COG3640 130 ILNRYEVVIVDTEAGIE--HFGRG-------TIEGVDLVIVVVDPSYKSLRT-AER----IKELAEELGIKRIFVVLNKV 195 (255)
T ss_pred HCCCCCEEEEECCCCHH--HHCCC-------CCCCCCEEEEEECCCHHHHHH-HHH----HHHHHHHHCCCEEEEEEEEC
T ss_conf 51667489996334566--65656-------325787799995787788888-999----99999871875499999503
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 58998899999999998629948
Q gi|254780648|r 282 DTVDSDTLARKKNELATQCGQVP 304 (335)
Q Consensus 282 Dl~~~e~~~~~~~~l~~~~~~~v 304 (335)
|-. .+.+..+....+.++
T Consensus 196 ~e~-----e~~~~~~~~~~~~~v 213 (255)
T COG3640 196 DEE-----EELLRELAEELGLEV 213 (255)
T ss_pred CCH-----HHHHHHHHHCCCCEE
T ss_conf 411-----577776532279748
No 493
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=94.88 E-value=0.076 Score=31.01 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=23.9
Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECC
Q ss_conf 68999997630112442167775303541014
Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTR 181 (335)
Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ 181 (335)
+.+.|..+-=--|||||+.-+||||+++.|-+
T Consensus 1186 k~lsf~I~~GqkVaiVGrSGsGKSTii~lL~R 1217 (1467)
T PTZ00265 1186 KDLSFSCDSKKTTAIVGETGSGKSTFMNLLLR 1217 (1467)
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 88459977998899989999839999999997
No 494
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.87 E-value=0.3 Score=27.36 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=34.2
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEEC
Q ss_conf 89999976301124421677753035410145401212110000001026632986899822
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILAD 212 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D 212 (335)
.+.|+.+-=--|||||..-+|||||++.|.+- .|.-|.+..++..+.-.|
T Consensus 368 ~is~~i~~Ge~vaIVG~SGsGKSTl~~LL~g~------------~p~~G~I~i~g~di~~i~ 417 (588)
T PRK11174 368 PLNFTLPAGQRVALVGPSGAGKTSLLNALLGF------------LPYQGSLKINGIELRELD 417 (588)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHHH------------CCCCCEEEECCEECCCCC
T ss_conf 64699749978999899986499999999872------------898838999998603089
No 495
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=94.85 E-value=0.18 Score=28.73 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=24.5
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 89999976301124421677753035410145
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
.+.|+++-=-=+||+|...+|||||++.|++-
T Consensus 266 ~vsf~v~~GEivgl~G~nGsGKsTL~~~l~Gl 297 (491)
T PRK10982 266 DVSFDLHKGEILGIAGLVGAKRTDIVETLFGI 297 (491)
T ss_pred EEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 26799968968997789999788999998198
No 496
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains; InterPro: IPR005690 Two integral outer envelope GTPases, Toc34 and Toc86, are proposed to regulate the recognition and translocation of nuclear-encoded preproteins during the early stages of protein import into chloroplasts. The long precursor of the 86K protein is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation . The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=94.83 E-value=0.024 Score=34.06 Aligned_cols=122 Identities=17% Similarity=0.278 Sum_probs=72.0
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEECC-CCCHHHHHHHCCC-
Q ss_conf 2677776-344332676676761013677530268999997630112442167775303541014-5401212110000-
Q gi|254780648|r 118 APGGNGG-FGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVTR-AKPKIADYPFTTL- 194 (335)
Q Consensus 118 ~~GG~GG-~GN~~f~s~~n~~P~~~~~G~~G~~~~~~lelk~iaDVglVG~PNaGKSTLln~ls~-ak~kIa~ypFTT~- 194 (335)
.+|-.+| .+-.+|-.....|-+.--.|..--. .-..|=.+|..-||||.-||+|-. .+.-+..|-..|.
T Consensus 90 l~GR~~~rv~~FSlD~A~~~A~~~EA~G~d~l~--------FSl~IlVLGK~GVGKSATINSI~~e~~~s~dAf~~~T~~ 161 (772)
T TIGR00993 90 LAGRQAGRVELFSLDAAKAKAEQLEAEGQDELD--------FSLNILVLGKSGVGKSATINSIFGEVKASIDAFGLGTTS 161 (772)
T ss_pred HCCCCCCEEEEECHHHHHHHHHHHHHCCCCCHH--------HEEEEEEECCCCCCCCHHHHHHHCCEEEEEECCCCCCCE
T ss_conf 425544400011037899999887534786213--------011434551568772010111123500120101466644
Q ss_pred EE-CCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHH----HHH--HHHHHH--CCCCCCC
Q ss_conf 00-10266329868998226421247311677512344333----335--788752--0222211
Q gi|254780648|r 195 YP-NLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHT----ERT--HVLLHI--VSALEEN 250 (335)
Q Consensus 195 ~P-~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhI----er~--~vLl~V--VD~s~~d 250 (335)
.. +.|+| ++.++.++|||||..-|.+- .--.+.|.-+ ..| |++||| +|.-.+|
T Consensus 162 V~~i~G~V--~Gv~i~viDTPGL~~s~~dQ-s~N~K~L~sVK~~~KK~PPDIVLY~DRLD~Q~RD 223 (772)
T TIGR00993 162 VQEIEGLV--DGVKIRVIDTPGLKSSASDQ-SKNEKILSSVKKLIKKNPPDIVLYVDRLDLQTRD 223 (772)
T ss_pred EEEEEEEE--EEEEEEEEECCCCCHHHHHH-HHCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC
T ss_conf 77666677--10799997578875555433-3020688888886317969669860022333465
No 497
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=94.81 E-value=0.059 Score=31.68 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=30.4
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE
Q ss_conf 999997630112442167775303541014540121211000000102663298689
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF 208 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~ 208 (335)
+.|++.-=-=++|+|..-+||||||+.|..- ..|.-|.+..+++.+
T Consensus 23 v~l~v~~Ge~~~llGpSG~GKtTlLr~iaGl-----------~~p~~G~I~~~g~~v 68 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL-----------ERQTAGTIYQGGRDI 68 (353)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEEC
T ss_conf 4869989999999999953599999999769-----------999873999999999
No 498
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.79 E-value=0.068 Score=31.31 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=23.8
Q ss_pred EEEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 89999976301124421677753035410145
Q gi|254780648|r 151 IIWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 151 ~~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
.+.|+++-=-=|||+|.--||||||++.++.-
T Consensus 12 ~Vsl~i~~Ge~vaiiG~sGsGKSTLl~~l~GL 43 (276)
T PRK13634 12 DVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL 43 (276)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 44779989989999999996999999999749
No 499
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=94.79 E-value=0.034 Score=33.13 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=6.3
Q ss_pred EEEEECCCCCCCEEEEE
Q ss_conf 12442167775303541
Q gi|254780648|r 162 IGIIGLPNAGKSTFLAS 178 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ 178 (335)
|||+|.--||||||++.
T Consensus 37 v~i~G~nGsGKSTll~~ 53 (648)
T PRK10535 37 VAIVGASGSGKSTLMNI 53 (648)
T ss_pred EEEECCCCCHHHHHHHH
T ss_conf 99999999629999999
No 500
>KOG0446 consensus
Probab=94.77 E-value=0.0071 Score=37.24 Aligned_cols=90 Identities=24% Similarity=0.358 Sum_probs=49.2
Q ss_pred EECEEEEECCCCCCCEEEEEE-------------CCCCCHHHH----------H-HHCCCEECC----------------
Q ss_conf 301124421677753035410-------------145401212----------1-100000010----------------
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASV-------------TRAKPKIAD----------Y-PFTTLYPNL---------------- 198 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~l-------------s~ak~kIa~----------y-pFTT~~P~l---------------- 198 (335)
+--|+.||-+.+||||.+.++ |+ +|.|-. | .|.|..|..
T Consensus 29 lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTR-rPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et 107 (657)
T KOG0446 29 LPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTR-RPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSET 107 (657)
T ss_pred CCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCEEC-CCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 885699779888611799985266356776675414-6502442324788653123221277523588799999988628
Q ss_pred -----------------EEEEECCEEEEEECCCCCCCCCCCCCC--CHHH----HHHHHHHHHHHHHHCCCCCC
Q ss_conf -----------------266329868998226421247311677--5123----44333335788752022221
Q gi|254780648|r 199 -----------------GIVKEGYKEFILADIPGIIKNAHQGAG--IGDR----FLKHTERTHVLLHIVSALEE 249 (335)
Q Consensus 199 -----------------Gvv~~~~~~~~i~D~PGlIegA~~~~g--lG~~----FLrhIer~~vLl~VVD~s~~ 249 (335)
.+...+-..++++|+||+..-+..+.. ...+ -+.+|++...++-.|..++.
T Consensus 108 ~~~~g~~kgiS~~pI~L~i~s~~v~~lTlvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~ 181 (657)
T KOG0446 108 DRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANS 181 (657)
T ss_pred HHHHCCCCCCCCCCEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCHHH
T ss_conf 87608998868887157506888851431678987346779998458999999999855663025652150454
Done!