HHsearch alignment for GI: 254780648 and conserved domain: pfam00009
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=99.92 E-value=3.3e-25 Score=172.62 Aligned_cols=155 Identities=20% Similarity=0.224 Sum_probs=106.0
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCC-----------------CEECCEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 0112442167775303541014540121211000-----------------00010266329868998226421247311
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTT-----------------LYPNLGIVKEGYKEFILADIPGIIKNAHQ 222 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT-----------------~~P~lGvv~~~~~~~~i~D~PGlIegA~~ 222 (335)
T Consensus 4 rnVaivG~~n~GKSTL~n~Ll~~~~~i~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDtPGh~~---- 79 (185)
T pfam00009 4 RNIGIIGHVDHGKTTLTDALLYVTGAIDKRGEVKQEGELDRLKEERERGITIKIAAVSFETKKRHINIIDTPGHVD---- 79 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEEEEEEECCCEEEEEECCCCCC----
T ss_conf 7899993899449999999971548765464310033336558888578269876999960893689998998714----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--
Q ss_conf 677512344333335788752022221101346667899877766750598899997465899889999999999862--
Q gi|254780648|r 223 GAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQC-- 300 (335)
Q Consensus 223 ~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~-- 300 (335)
T Consensus 80 ---f~~~~~~~l~~aD~~vlVvda~~G~~~qt~~-~~~~~~~-----~~~p~iv~vNKiD~v~~~~~~~~~~e~~~~ll~ 150 (185)
T pfam00009 80 ---FTKEMIRGAAQADGAILVVDAVEGVMPQTRE-HLLLAKQ-----LGVPIIVFINKMDRVDDAELDEVVEEISRELLE 150 (185)
T ss_pred ---HHHHHHHHHHHCCCCEEEEECCCCCCCCCHH-HHHHHHH-----HCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf ---3999999986465642999867685323099-9999998-----289879999773277767699999999999888
Q ss_pred -------CCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf -------994899988878899999999999998
Q gi|254780648|r 301 -------GQVPFEFSSITGHGIPQILECLHDKIF 327 (335)
Q Consensus 301 -------~~~vi~ISA~tg~GI~eL~~~I~e~L~ 327 (335)
T Consensus 151 ~~~~~~~~~pivpiSA~~G~gv~~Ll~~i~~~lP 184 (185)
T pfam00009 151 KYGFGGETIPVIPGSALTGEGIDTLLEALDLYLP 184 (185)
T ss_pred HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7324899886999678999798999999997785