HHsearch alignment for GI: 254780648 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.04 E-value=0.00045 Score=44.52 Aligned_cols=143 Identities=20% Similarity=0.235 Sum_probs=69.4
Q ss_pred EEEEECCCCCCCEEEEEECC------CCC--------HH------------HHHHHCCCE----EC------CEEEEECC
Q ss_conf 12442167775303541014------540--------12------------121100000----01------02663298
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTR------AKP--------KI------------ADYPFTTLY----PN------LGIVKEGY 205 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~------ak~--------kI------------a~ypFTT~~----P~------lGvv~~~~ 205 (335)
T Consensus 4 i~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~~~ 83 (196)
T pfam00448 4 ILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKAEN 83 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99989999988999999999999779928999758776889999999998639817814877787899999999988468
Q ss_pred EEEEEECCCCCCCCCCCCCCCH---HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 6899822642124731167751---2344333335788752022221101346667899877766750598899997465
Q gi|254780648|r 206 KEFILADIPGIIKNAHQGAGIG---DRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQID 282 (335)
Q Consensus 206 ~~~~i~D~PGlIegA~~~~glG---~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiD 282 (335)
T Consensus 84 ~D~IlIDTaGr~~---~d~~~~~el~~~~~~~~~-~~~~LVl~a~~~--~~~~~~~----~~f~~~--~~~~~~I~TKlD 151 (196)
T pfam00448 84 YDVVLVDTAGRLQ---NDKNLMDELKKIKRVIAP-DEVLLVLDATTG--QNALNQA----KAFNEA--VGITGVILTKLD 151 (196)
T ss_pred CCEEEEECCCCCC---CCHHHHHHHHHHHHHCCC-CCEEEEEECCCC--CCHHHHH----HHHHHH--CCCCCEEEEEEC
T ss_conf 9999998999874---767789999999852287-302899856778--2137899----987600--477626888405
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 899889999999999862994899988878899999999
Q gi|254780648|r 283 TVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILEC 321 (335)
Q Consensus 283 l~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~ 321 (335)
T Consensus 152 et~--~~G~~l~-~~~~~~~Pi~~~t--~Gq~v~Dl~~~ 185 (196)
T pfam00448 152 GDA--KGGAALS-IAAETGKPIKFIG--VGEKIDDLEPF 185 (196)
T ss_pred CCC--CCCHHHH-HHHHHCCCEEEEE--CCCCHHHCCCC
T ss_conf 788--7529998-9999896979996--79981206347