HHsearch alignment for GI: 254780648 and conserved domain: pfam00448

>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.04  E-value=0.00045  Score=44.52  Aligned_cols=143  Identities=20%  Similarity=0.235  Sum_probs=69.4

Q ss_pred             EEEEECCCCCCCEEEEEECC------CCC--------HH------------HHHHHCCCE----EC------CEEEEECC
Q ss_conf             12442167775303541014------540--------12------------121100000----01------02663298
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTR------AKP--------KI------------ADYPFTTLY----PN------LGIVKEGY  205 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~------ak~--------kI------------a~ypFTT~~----P~------lGvv~~~~  205 (335)
T Consensus         4 i~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~~~   83 (196)
T pfam00448         4 ILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKAEN   83 (196)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             99989999988999999999999779928999758776889999999998639817814877787899999999988468


Q ss_pred             EEEEEECCCCCCCCCCCCCCCH---HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             6899822642124731167751---2344333335788752022221101346667899877766750598899997465
Q gi|254780648|r  206 KEFILADIPGIIKNAHQGAGIG---DRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQID  282 (335)
Q Consensus       206 ~~~~i~D~PGlIegA~~~~glG---~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiD  282 (335)
T Consensus        84 ~D~IlIDTaGr~~---~d~~~~~el~~~~~~~~~-~~~~LVl~a~~~--~~~~~~~----~~f~~~--~~~~~~I~TKlD  151 (196)
T pfam00448        84 YDVVLVDTAGRLQ---NDKNLMDELKKIKRVIAP-DEVLLVLDATTG--QNALNQA----KAFNEA--VGITGVILTKLD  151 (196)
T ss_pred             CCEEEEECCCCCC---CCHHHHHHHHHHHHHCCC-CCEEEEEECCCC--CCHHHHH----HHHHHH--CCCCCEEEEEEC
T ss_conf             9999998999874---767789999999852287-302899856778--2137899----987600--477626888405


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf             899889999999999862994899988878899999999
Q gi|254780648|r  283 TVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILEC  321 (335)
Q Consensus       283 l~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~  321 (335)
T Consensus       152 et~--~~G~~l~-~~~~~~~Pi~~~t--~Gq~v~Dl~~~  185 (196)
T pfam00448       152 GDA--KGGAALS-IAAETGKPIKFIG--VGEKIDDLEPF  185 (196)
T ss_pred             CCC--CCCHHHH-HHHHHCCCEEEEE--CCCCHHHCCCC
T ss_conf             788--7529998-9999896979996--79981206347